FC930053

Overview
NameFC930053
Unique NameFC930053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930053_ssr135 microsatellite FC930053_ssr135:135..149. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930053_ssr181 microsatellite FC930053_ssr181:181..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11566 contig Ccv1_Contig11566:26..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURXL (Betaine aldehyde dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=betB PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30
Identity = 66/161 (40.99%), Postives = 93/161 (57.76%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G +VD+ SG+TF TLDP TG+ +  V +  A DV RAV +AR+   E  W  +TA +RS+++ R  ++L   NDE+AALET D GKP  ++   ++     +  YYAG A  I+G   P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIGGAYVDATSGETFDTLDPATGETLASVQQASAADVERAVQSAREGQRE--WAALTAMQRSRVLRRAVEILRERNDELAALETRDTGKPIAETLAVDIATGADVIEYYAGLATAIEGQQIPLRPTSFVYTRREPLGVCAGIGAWNYPIQIACWKSAPA 166          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH_DEIRA (Aldehyde dehydrogenase OS=Deinococcus radiodurans GN=aldA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.101e-29
Identity = 67/158 (42.41%), Postives = 89/158 (56.33%), Query Frame = 3
Query:  246 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            I GQ+V    G+ F    P  G V T  A   AEDV  A+ AA +A     W R +  ERS I+L+ AD +E++ + +A  ETWDNGKP  ++   ++P+    FRY+AG     +G  +  D        HEP+GV GQIIPWNFPLLM  WK+ PA
Sbjct:   33 IGGQWVPPVKGQYFDNASPVDGKVFTQAARSTAEDVELALDAAHRAAPA--WGRTSVTERSNILLKIADRMEQNLEMLAVAETWDNGKPVRETLAADLPLAIDHFRYFAGCIRAQEGGLSQIDDSTVAYHFHEPLGVVGQIIPWNFPLLMGVWKLAPA 188          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH_VIBCH (Aldehyde dehydrogenase OS=Vibrio cholerae GN=aldA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.437e-29
Identity = 67/158 (42.41%), Postives = 91/158 (57.59%), Query Frame = 3
Query:  246 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            I GQ++   SG+ F    P  G V   VA   ++DV  A+ AA  A +   W   +A ERS I+LR AD +E + + +A +E+WDNGKP  ++   ++P+T   FRY+A      +G  +  D       L EPIGV GQIIPWNFPLLM AWK+ PA
Sbjct:   23 IGGQWMKPHSGEYFSNTSPVNGLVFCRVARSSSQDVELALDAAHNALES--WSTTSAVERSNILLRIADRIESNLETLAIVESWDNGKPIRETLAADLPLTIDHFRYFAACIRSQEGAASELDSRTLTYHLPEPIGVVGQIIPWNFPLLMAAWKLAPA 178          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH_VIBC3 (Aldehyde dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=aldA PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.437e-29
Identity = 67/158 (42.41%), Postives = 91/158 (57.59%), Query Frame = 3
Query:  246 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            I GQ++   SG+ F    P  G V   VA   ++DV  A+ AA  A +   W   +A ERS I+LR AD +E + + +A +E+WDNGKP  ++   ++P+T   FRY+A      +G  +  D       L EPIGV GQIIPWNFPLLM AWK+ PA
Sbjct:   23 IGGQWMKPHSGEYFSNTSPVNGLVFCRVARSSSQDVELALDAAHNALES--WSTTSAVERSNILLRIADRIESNLETLAIVESWDNGKPIRETLAADLPLTIDHFRYFAACIRSQEGAASELDSRTLTYHLPEPIGVVGQIIPWNFPLLMAAWKLAPA 178          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_KLEP3 (Betaine aldehyde dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=betB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.452e-29
Identity = 66/161 (40.99%), Postives = 93/161 (57.76%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            QL ING +  + SG+TF T++P TG+V+  V     EDV+RAV +A++   +  W  MTA ERS+I+ R  DLL + NDE+A LET D GKP  ++A  ++     +  YYAG    ++G   P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 QLYINGGYTSATSGRTFETINPATGEVLATVQAAGREDVDRAVESAQRG--QKIWAAMTAMERSRILRRAVDLLRQRNDELARLETLDTGKPLSETAAVDIVTGADVLEYYAGLIPALEGSQIPLRDSSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPA 166          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_YERP3 (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=betB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.182e-29
Identity = 64/161 (39.75%), Postives = 93/161 (57.76%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L ING + DSASG TF  ++P  G+ I  +    A+DV++AV+AA++   +  W  MTA ERS+I+ R  D+L   NDE+AA+ET D GKP  ++   ++     +  YYAG    ++G   P  G   V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 KLYINGAYTDSASGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGSAFVYTRREPLGVVAGIGAWNYPIQIALWKSAPA 166          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_SERP5 (Betaine aldehyde dehydrogenase OS=Serratia proteamaculans (strain 568) GN=betB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.182e-29
Identity = 66/161 (40.99%), Postives = 90/161 (55.90%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L ING +VDS  GKTF  ++P  G+V+  +    AEDVNRAV++A  A  +  W  MTA  RS+I+ R  D+L   NDE+AALET D GK   ++   ++     +  YYAG    I+G   P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 KLYINGAYVDSTDGKTFNAVNPANGEVLAEIQSASAEDVNRAVASA--ASGQKVWAAMTAMARSRILRRAVDILRERNDELAALETLDTGKAMSETTAVDIVTGADVLEYYAGLIPSIEGQQIPLRDTSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPA 166          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURPS (Betaine aldehyde dehydrogenase OS=Burkholderia pseudomallei GN=betB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 66/161 (40.99%), Postives = 92/161 (57.14%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G   D+ SGKTF T DP TG+++  V +  A+DV+RAV++AR+   E  W  MTA +RS+I+ R  +LL   ND +A LE  D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIAGAHADATSGKTFDTFDPATGELLARVQQASADDVDRAVASAREGQRE--WAAMTAMQRSRILRRAVELLRERNDALAELEMRDTGKPIAETRAVDIVTGADVIEYYAGLATAIEGLQVPLRPESFVYTRREPLGVCAGIGAWNYPIQIACWKSAPA 166          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURP1 (Betaine aldehyde dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=betB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 66/161 (40.99%), Postives = 92/161 (57.14%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G   D+ SGKTF T DP TG+++  V +  A+DV+RAV++AR+   E  W  MTA +RS+I+ R  +LL   ND +A LE  D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIAGAHADATSGKTFDTFDPATGELLARVQQASADDVDRAVASAREGQRE--WAAMTAMQRSRILRRAVELLRERNDALAELEMRDTGKPIAETRAVDIVTGADVIEYYAGLATAIEGLQVPLRPESFVYTRREPLGVCAGIGAWNYPIQIACWKSAPA 166          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURP0 (Betaine aldehyde dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=betB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 66/161 (40.99%), Postives = 92/161 (57.14%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G   D+ SGKTF T DP TG+++  V +  A+DV+RAV++AR+   E  W  MTA +RS+I+ R  +LL   ND +A LE  D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIAGAHADATSGKTFDTFDPATGELLARVQQASADDVDRAVASAREGQRE--WAAMTAMQRSRILRRAVELLRERNDALAELEMRDTGKPIAETRAVDIVTGADVIEYYAGLATAIEGLQVPLRPESFVYTRREPLGVCAGIGAWNYPIQIACWKSAPA 166          
The following BLAST results are available for this feature:
BLAST of FC930053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
BETB_BURXL6.453e-3040.99Betaine aldehyde dehydrogenase OS=Burkholderia xen... [more]
ALDH_DEIRA1.101e-2942.41Aldehyde dehydrogenase OS=Deinococcus radiodurans ... [more]
ALDH_VIBCH1.437e-2942.41Aldehyde dehydrogenase OS=Vibrio cholerae GN=aldA ... [more]
ALDH_VIBC31.437e-2942.41Aldehyde dehydrogenase OS=Vibrio cholerae serotype... [more]
BETB_KLEP32.452e-2940.99Betaine aldehyde dehydrogenase OS=Klebsiella pneum... [more]
BETB_YERP34.182e-2939.75Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
BETB_SERP54.182e-2940.99Betaine aldehyde dehydrogenase OS=Serratia proteam... [more]
BETB_BURPS5.462e-2940.99Betaine aldehyde dehydrogenase OS=Burkholderia pse... [more]
BETB_BURP15.462e-2940.99Betaine aldehyde dehydrogenase OS=Burkholderia pse... [more]
BETB_BURP05.462e-2940.99Betaine aldehyde dehydrogenase OS=Burkholderia pse... [more]

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Properties
Property NameValue
Genbank descriptionC34003C07EF PostHarvC1 Citrus clementina cDNA clone C34003C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930053 ID=FC930053; Name=FC930053; organism=Citrus clementina; type=EST; length=720bp
AGGGAGGAAAAAAAAAAAAAGATTTCCTTAAAGTTGTGATGGCTGCAAGA
AGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTTCTTCACCTACTCT
GTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCTGCTGCTGCTGCTG
CCGCCTCCTGCGGATACAGCACGGCTTCTTCTGCTGCTGCTGCTGCTGAA
GATCCAATTACTCCGCCTGTTAAAGTTGATTATACTCAGCTTCTAATTAA
TGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTTCCCACATTAGACC
CCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGGTGAGGCTGAAGAC
GTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTGATGAAGGACCGTG
GCCTAGGATGACTGCTTATGAAAGGTCAAAAATAATTTTGCGCTTCGCTG
ATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCTTGAGACTTGGGAT
AACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAGTACCAATGACCAC
GCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAGATTCAGGGTCTCA
CTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTTGCACGAACCAATT
GGTGTAGCAGGTCAAATTATCCCATGGAACTTTCCCCTTCTCATGTTTGC
TTGGAAAGTTGGGCCTGCAT
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