FC930053

Overview
NameFC930053
Unique NameFC930053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930053_ssr135 microsatellite FC930053_ssr135:135..149. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930053_ssr181 microsatellite FC930053_ssr181:181..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11566 contig Ccv1_Contig11566:26..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURMS (Betaine aldehyde dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=betB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 66/161 (40.99%), Postives = 92/161 (57.14%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G   D+ SGKTF T DP TG+++  V +  A+DV+RAV++AR+   E  W  MTA +RS+I+ R  +LL   ND +A LE  D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIAGAHADATSGKTFDTFDPATGELLARVQQASADDVDRAVASAREGQRE--WAAMTAMQRSRILRRAVELLRERNDALAELEMRDTGKPIAETRAVDIVTGADVIEYYAGLATAIEGLQVPLRPESFVYTRREPLGVCAGIGAWNYPIQIACWKSAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURMA (Betaine aldehyde dehydrogenase OS=Burkholderia mallei GN=betB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 66/161 (40.99%), Postives = 92/161 (57.14%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G   D+ SGKTF T DP TG+++  V +  A+DV+RAV++AR+   E  W  MTA +RS+I+ R  +LL   ND +A LE  D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIAGAHADATSGKTFDTFDPATGELLARVQQASADDVDRAVASAREGQRE--WAAMTAMQRSRILRRAVELLRERNDALAELEMRDTGKPIAETRAVDIVTGADVIEYYAGLATAIEGLQVPLRPESFVYTRREPLGVCAGIGAWNYPIQIACWKSAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURM9 (Betaine aldehyde dehydrogenase OS=Burkholderia mallei (strain NCTC 10229) GN=betB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 66/161 (40.99%), Postives = 92/161 (57.14%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G   D+ SGKTF T DP TG+++  V +  A+DV+RAV++AR+   E  W  MTA +RS+I+ R  +LL   ND +A LE  D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIAGAHADATSGKTFDTFDPATGELLARVQQASADDVDRAVASAREGQRE--WAAMTAMQRSRILRRAVELLRERNDALAELEMRDTGKPIAETRAVDIVTGADVIEYYAGLATAIEGLQVPLRPESFVYTRREPLGVCAGIGAWNYPIQIACWKSAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURM7 (Betaine aldehyde dehydrogenase OS=Burkholderia mallei (strain NCTC 10247) GN=betB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.462e-29
Identity = 66/161 (40.99%), Postives = 92/161 (57.14%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G   D+ SGKTF T DP TG+++  V +  A+DV+RAV++AR+   E  W  MTA +RS+I+ R  +LL   ND +A LE  D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIAGAHADATSGKTFDTFDPATGELLARVQQASADDVDRAVASAREGQRE--WAAMTAMQRSRILRRAVELLRERNDALAELEMRDTGKPIAETRAVDIVTGADVIEYYAGLATAIEGLQVPLRPESFVYTRREPLGVCAGIGAWNYPIQIACWKSAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_YERPS (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis GN=betB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.134e-29
Identity = 64/161 (39.75%), Postives = 92/161 (57.14%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L ING + DS SG TF  ++P  G+ I  +    A+DV++AV+AA++   +  W  MTA ERS+I+ R  D+L   NDE+AA+ET D GKP  ++   ++     +  YYAG    ++G   P  G   V T  EP+GV   I  WN+PL +  WK  PA
Sbjct:    8 KLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGSAFVYTRREPLGVVAGIGAWNYPLQIALWKSAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_YERPP (Betaine aldehyde dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=betB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.134e-29
Identity = 64/161 (39.75%), Postives = 92/161 (57.14%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L ING + DS SG TF  ++P  G+ I  +    A+DV++AV+AA++   +  W  MTA ERS+I+ R  D+L   NDE+AA+ET D GKP  ++   ++     +  YYAG    ++G   P  G   V T  EP+GV   I  WN+PL +  WK  PA
Sbjct:    8 KLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGSAFVYTRREPLGVVAGIGAWNYPLQIALWKSAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_YERPN (Betaine aldehyde dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=betB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.134e-29
Identity = 64/161 (39.75%), Postives = 92/161 (57.14%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L ING + DS SG TF  ++P  G+ I  +    A+DV++AV+AA++   +  W  MTA ERS+I+ R  D+L   NDE+AA+ET D GKP  ++   ++     +  YYAG    ++G   P  G   V T  EP+GV   I  WN+PL +  WK  PA
Sbjct:    8 KLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGSAFVYTRREPLGVVAGIGAWNYPLQIALWKSAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_YERPE (Betaine aldehyde dehydrogenase OS=Yersinia pestis GN=betB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.134e-29
Identity = 64/161 (39.75%), Postives = 92/161 (57.14%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L ING + DS SG TF  ++P  G+ I  +    A+DV++AV+AA++   +  W  MTA ERS+I+ R  D+L   NDE+AA+ET D GKP  ++   ++     +  YYAG    ++G   P  G   V T  EP+GV   I  WN+PL +  WK  PA
Sbjct:    8 KLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGSAFVYTRREPLGVVAGIGAWNYPLQIALWKSAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_YERPB (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=betB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.134e-29
Identity = 64/161 (39.75%), Postives = 92/161 (57.14%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L ING + DS SG TF  ++P  G+ I  +    A+DV++AV+AA++   +  W  MTA ERS+I+ R  D+L   NDE+AA+ET D GKP  ++   ++     +  YYAG    ++G   P  G   V T  EP+GV   I  WN+PL +  WK  PA
Sbjct:    8 KLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGSAFVYTRREPLGVVAGIGAWNYPLQIALWKSAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_YERPA (Betaine aldehyde dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=betB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.134e-29
Identity = 64/161 (39.75%), Postives = 92/161 (57.14%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L ING + DS SG TF  ++P  G+ I  +    A+DV++AV+AA++   +  W  MTA ERS+I+ R  D+L   NDE+AA+ET D GKP  ++   ++     +  YYAG    ++G   P  G   V T  EP+GV   I  WN+PL +  WK  PA
Sbjct:    8 KLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGSAFVYTRREPLGVVAGIGAWNYPLQIALWKSAPA 166
The following BLAST results are available for this feature:
BLAST of FC930053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
BETB_BURMS5.462e-2940.99Betaine aldehyde dehydrogenase OS=Burkholderia mal... [more]
BETB_BURMA5.462e-2940.99Betaine aldehyde dehydrogenase OS=Burkholderia mal... [more]
BETB_BURM95.462e-2940.99Betaine aldehyde dehydrogenase OS=Burkholderia mal... [more]
BETB_BURM75.462e-2940.99Betaine aldehyde dehydrogenase OS=Burkholderia mal... [more]
BETB_YERPS7.134e-2939.75Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
BETB_YERPP7.134e-2939.75Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]
BETB_YERPN7.134e-2939.75Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]
BETB_YERPE7.134e-2939.75Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]
BETB_YERPB7.134e-2939.75Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
BETB_YERPA7.134e-2939.75Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]

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Properties
Property NameValue
Genbank descriptionC34003C07EF PostHarvC1 Citrus clementina cDNA clone C34003C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930053 ID=FC930053; Name=FC930053; organism=Citrus clementina; type=EST; length=720bp
AGGGAGGAAAAAAAAAAAAAGATTTCCTTAAAGTTGTGATGGCTGCAAGA
AGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTTCTTCACCTACTCT
GTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCTGCTGCTGCTGCTG
CCGCCTCCTGCGGATACAGCACGGCTTCTTCTGCTGCTGCTGCTGCTGAA
GATCCAATTACTCCGCCTGTTAAAGTTGATTATACTCAGCTTCTAATTAA
TGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTTCCCACATTAGACC
CCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGGTGAGGCTGAAGAC
GTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTGATGAAGGACCGTG
GCCTAGGATGACTGCTTATGAAAGGTCAAAAATAATTTTGCGCTTCGCTG
ATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCTTGAGACTTGGGAT
AACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAGTACCAATGACCAC
GCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAGATTCAGGGTCTCA
CTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTTGCACGAACCAATT
GGTGTAGCAGGTCAAATTATCCCATGGAACTTTCCCCTTCTCATGTTTGC
TTGGAAAGTTGGGCCTGCAT
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