FC930053

Overview
NameFC930053
Unique NameFC930053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930053_ssr135 microsatellite FC930053_ssr135:135..149. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930053_ssr181 microsatellite FC930053_ssr181:181..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11566 contig Ccv1_Contig11566:26..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_YERPY (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=betB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.217e-28
Identity = 63/161 (39.13%), Postives = 92/161 (57.14%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L ING + DS SG TF  ++P  G+ I  +    A+DV++AV+AA++   +  W  MTA ERS+I+ R  D+L   NDE+AA+ET D GKP  ++   ++     +  YYAG    ++G   P  G   V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 KLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGSAFVYTRREPLGVVAGIGAWNYPIQIALWKSAPA 166          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH_STRCO (Probable aldehyde dehydrogenase OS=Streptomyces coelicolor GN=SCO1174 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.589e-28
Identity = 63/158 (39.87%), Postives = 89/158 (56.33%), Query Frame = 3
Query:  246 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            I G++V  A G+ F    P  G   T +A G A+DV RA+ AA +A     W R +  ERS I+L+ AD +E + + +A  E+W+NGKP  ++   ++P+    FRY+AG     +G     D        HEP+GV  QIIPWNFP+LM  WK+ PA
Sbjct:   24 IGGEYVPPARGQYFENPSPVNGLPFTEIARGTADDVERALDAAHEAAPG--WGRTSVTERSDILLKIADRMEANLERLAVAESWENGKPVRETLAADIPLAIDHFRYFAGAVRAQEGSLGEIDDDTVAYHFHEPLGVVAQIIPWNFPILMATWKLAPA 179          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDB_ECOLI (Aldehyde dehydrogenase B OS=Escherichia coli (strain K12) GN=aldB PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.589e-28
Identity = 61/158 (38.61%), Postives = 92/158 (58.23%), Query Frame = 3
Query:  246 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            I G++V  A G+ +  L P TG ++  VA     D++ A+ AA K  D+  W   +  +R+ I+ + AD +E++ + +A  ETWDNGKP  +++  +VP+    FRY+A      +G  +  D        HEP+GV GQIIPWNFPLLM +WK+ PA
Sbjct:   29 IGGEWVAPADGEYYQNLTPVTGQLLCEVASSGKRDIDLALDAAHKVKDK--WAHTSVQDRAAILFKIADRMEQNLELLATAETWDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEPLGVVGQIIPWNFPLLMASWKMAPA 184          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURP8 (Betaine aldehyde dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=betB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.076e-28
Identity = 64/161 (39.75%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G +VD+ SG TF T DP TG+++  V +    D+ RAV +AR+   +  W  MTA +RS+I+ R  DLL   NDE+A LE  D GKP  ++   ++     +  YYAG A  I+G   P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIGGDYVDATSGVTFDTFDPATGELLATVQQASEADIERAVQSAREG--QRAWAAMTAMQRSRILRRAVDLLRERNDELAELEMRDTGKPIAETRAVDIVTGADVIEYYAGLATAIEGQQIPLRAESFVYTRREPLGVTAGIGAWNYPIQIACWKSAPA 166          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURP6 (Betaine aldehyde dehydrogenase OS=Burkholderia pseudomallei (strain 668) GN=betB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.076e-28
Identity = 65/161 (40.37%), Postives = 92/161 (57.14%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G   D+ SGKTF T DP TG+++  V +  A+DV+RAV++AR+   E  W  MTA +RS+I+ R  +LL   N+ +A LE  D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIAGAHADATSGKTFDTFDPATGELLARVQQASADDVDRAVASAREGQRE--WAAMTAMQRSRILRRAVELLRERNNALAELEMRDTGKPIAETRAVDIVTGADVIEYYAGLATAIEGLQVPLRPESFVYTRREPLGVCAGIGAWNYPIQIACWKSAPA 166          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BACSU (Betaine aldehyde dehydrogenase OS=Bacillus subtilis GN=gbsA PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.076e-28
Identity = 64/161 (39.75%), Postives = 100/161 (62.11%), Query Frame = 3
Query:  240 LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGP-YHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            L I+G+++ +   +    ++P   + I  V+EG  ED  +A++AAR+AFD+G W  ++  ER KI+L+ A+L+ R  +E+A LE+ D GK  E+S + ++     +F+YYAG ADK  G    +  P    + + EPIGV GQI PWN+PLL  +WK+ PA
Sbjct:    5 LFIDGEWISAEKEQIRSIINPFNQEEIATVSEGGREDAIKAIAAARRAFDKGEWSSLSGLERGKIVLKIAELIRRDLEELAELESLDTGKTLEES-KADMDDIANVFQYYAGLADKDGGEIISSPIPDSESKIIREPIGVCGQITPWNYPLLQASWKIAPA 164          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH6_YEAST (Magnesium-activated aldehyde dehydrogenase, cytosolic OS=Saccharomyces cerevisiae GN=ALD6 PE=1 SV=4)

HSP 1 Score: 125.561 bits (314), Expect = 2.711e-28
Identity = 68/174 (39.08%), Postives = 95/174 (54.60%), Query Frame = 3
Query:  207 ITPPVKVDYTQ---LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            IT P  + Y Q   L IN +F+ +  GKT+P  DP T + +  V+    EDV  A+  A +AF +  W      ER +++ + AD LE   D ++++E  DNGK     A+ +V +     R  A +ADK+ G T      Y   T  EPIGV GQIIPWNFP++M AWK+ PA
Sbjct:   14 ITLPNGLTYEQPTGLFINNKFMKAQDGKTYPVEDPSTENTVCEVSSATTEDVEYAIECADRAFHDTEWATQDPRERGRLLSKLADELESQIDLVSSIEALDNGKTL-ALARGDVTIAINCLRDAAAYADKVNGRTINTGDGYMNFTTLEPIGVCGQIIPWNFPIMMLAWKIAPA 186          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: YLX7_SCHPO (Putative aldehyde dehydrogenase-like protein C922.07c OS=Schizosaccharomyces pombe GN=SPAC922.07c PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 64/160 (40.00%), Postives = 96/160 (60.00%), Query Frame = 3
Query:  240 LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            L ING++  SA  +T+ T+DP   +VI  V     ++++ AV +A++AF    W ++   E+ +++++ A+L E+H D +AA+E  D+GKP   +A+ +V  T  L RY AGWADKI G   P            PIGV GQI+PWN+PL M  WK+ PA
Sbjct:   23 LYINGEWHKSA--ETWETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKT--WKKVPGSEKGELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIYGQVIPTGPEKLAYAKRTPIGVCGQIVPWNYPLNMAGWKIAPA 178          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_STRM5 (Betaine aldehyde dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=betB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 67/161 (41.61%), Postives = 90/161 (55.90%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            QL I+GQ VD+ SGKTF T++P TGDVI  V      DV RAV +A +   +  W  MTA ERS+I+ R  ++L   NDE+A LET D GK   ++   ++     +  YYAG A  I+G+  P        T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 QLYIHGQRVDATSGKTFRTVNPATGDVIAEVQVASQADVERAVQSAAEG--QKVWAAMTAMERSRILRRAVEILRERNDELAHLETLDTGKALAETTTVDIVTGADVVEYYAGLATAIEGIQLPLRESSFFYTRREPLGVVAGIGAWNYPIQIAMWKSAPA 166          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH2_YEAST (Aldehyde dehydrogenase [NAD(P)+] 1 OS=Saccharomyces cerevisiae GN=ALD2 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 68/170 (40.00%), Postives = 96/170 (56.47%), Query Frame = 3
Query:  213 PPVKVDYTQ---LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKI-QGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKV 710
            P +K+   Q   L IN +F  S+ GKT  T++P TG+ IT       +DV++AV AAR AFD   W + ++ +R   +     L+E   D +AALET D GKP+  +A+ ++    +L RY+AG ADK  +G T P        TL  P GV  QI+PWN+PL M  WK+
Sbjct:   11 PQLKISLKQPLGLFINNEFCPSSDGKTIETVNPATGEPITSFQAANEKDVDKAVKAARAAFDN-VWSKTSSEQRGIYLSNLLKLIEEEQDTLAALETLDAGKPYHSNAKGDLAQILQLTRYFAGSADKFDKGATIPLTFNKFAYTLKVPFGVVAQIVPWNYPLAMACWKL 179          
The following BLAST results are available for this feature:
BLAST of FC930053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
BETB_YERPY1.217e-2839.13Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
ALDH_STRCO1.589e-2839.87Probable aldehyde dehydrogenase OS=Streptomyces co... [more]
ALDB_ECOLI1.589e-2838.61Aldehyde dehydrogenase B OS=Escherichia coli (stra... [more]
BETB_BURP82.076e-2839.75Betaine aldehyde dehydrogenase OS=Burkholderia phy... [more]
BETB_BURP62.076e-2840.37Betaine aldehyde dehydrogenase OS=Burkholderia pse... [more]
BETB_BACSU2.076e-2839.75Betaine aldehyde dehydrogenase OS=Bacillus subtili... [more]
ALDH6_YEAST2.711e-2839.08Magnesium-activated aldehyde dehydrogenase, cytoso... [more]
YLX7_SCHPO3.541e-2840.00Putative aldehyde dehydrogenase-like protein C922.... [more]
BETB_STRM53.541e-2841.61Betaine aldehyde dehydrogenase OS=Stenotrophomonas... [more]
ALDH2_YEAST3.541e-2840.00Aldehyde dehydrogenase [NAD(P)+] 1 OS=Saccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionC34003C07EF PostHarvC1 Citrus clementina cDNA clone C34003C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930053 ID=FC930053; Name=FC930053; organism=Citrus clementina; type=EST; length=720bp
AGGGAGGAAAAAAAAAAAAAGATTTCCTTAAAGTTGTGATGGCTGCAAGA
AGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTTCTTCACCTACTCT
GTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCTGCTGCTGCTGCTG
CCGCCTCCTGCGGATACAGCACGGCTTCTTCTGCTGCTGCTGCTGCTGAA
GATCCAATTACTCCGCCTGTTAAAGTTGATTATACTCAGCTTCTAATTAA
TGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTTCCCACATTAGACC
CCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGGTGAGGCTGAAGAC
GTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTGATGAAGGACCGTG
GCCTAGGATGACTGCTTATGAAAGGTCAAAAATAATTTTGCGCTTCGCTG
ATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCTTGAGACTTGGGAT
AACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAGTACCAATGACCAC
GCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAGATTCAGGGTCTCA
CTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTTGCACGAACCAATT
GGTGTAGCAGGTCAAATTATCCCATGGAACTTTCCCCTTCTCATGTTTGC
TTGGAAAGTTGGGCCTGCAT
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