FC930065

Overview
NameFC930065
Unique NameFC930065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_XANCP (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris GN=betB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 54/148 (36.49%), Postives = 82/148 (55.41%), Query Frame = 1
Query:  253 LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            L I G++V +  G TF  ++P TG+V+ +V   +A+D++ AV +A+    +  W   T  ERS+I+LR   LL   ND +A LET + GKP  ++   ++     +  YYAG A  +QG+  P        T HEP+GV G I  WN+
Sbjct:    9 LYIGGRYVPARGGHTFEVVNPATGEVLANVHNADADDLDAAVDSAKAG--QRHWAALTVVERSRILLRAVALLRERNDALAELETLNTGKPLSETRSVDIVTGADVLEYYAGVAQALQGVQVPLREGSFFYTRHEPLGVVGAIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_XANCB (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=betB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 54/148 (36.49%), Postives = 82/148 (55.41%), Query Frame = 1
Query:  253 LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            L I G++V +  G TF  ++P TG+V+ +V   +A+D++ AV +A+    +  W   T  ERS+I+LR   LL   ND +A LET + GKP  ++   ++     +  YYAG A  +QG+  P        T HEP+GV G I  WN+
Sbjct:    9 LYIGGRYVPARGGHTFEVVNPATGEVLANVHNADADDLDAAVDSAKAG--QRHWAALTVVERSRILLRAVALLRERNDALAELETLNTGKPLSETRSVDIVTGADVLEYYAGVAQALQGVQVPLREGSFFYTRHEPLGVVGAIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_XANC8 (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=betB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 54/148 (36.49%), Postives = 82/148 (55.41%), Query Frame = 1
Query:  253 LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            L I G++V +  G TF  ++P TG+V+ +V   +A+D++ AV +A+    +  W   T  ERS+I+LR   LL   ND +A LET + GKP  ++   ++     +  YYAG A  +QG+  P        T HEP+GV G I  WN+
Sbjct:    9 LYIGGRYVPARGGHTFEVVNPATGEVLANVHNADADDLDAAVDSAKAG--QRHWAALTVVERSRILLRAVALLRERNDALAELETLNTGKPLSETRSVDIVTGADVLEYYAGVAQALQGVQVPLREGSFFYTRHEPLGVVGAIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_ECOSE (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain SE11) GN=betB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            QL I+G +  + SG+TF T++P  G+V+  V     EDV+RAV +A++   +  W   TA ERS+I+ R  D+L   NDE+A LET D GK + +++  ++     +  YYAG    ++G   P      V T  EP+GV   I  WN+
Sbjct:    8 QLYIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQG--QKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIPLRETLFVYTRREPLGVVAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_ECO8A (Betaine aldehyde dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            QL I+G +  + SG+TF T++P  G+V+  V     EDV+RAV +A++   +  W   TA ERS+I+ R  D+L   NDE+A LET D GK + +++  ++     +  YYAG    ++G   P      V T  EP+GV   I  WN+
Sbjct:    8 QLYIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQG--QKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIPLRETLFVYTRREPLGVVAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_ECO5E (Betaine aldehyde dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=betB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            QL I+G +  + SG+TF T++P  G+V+  V     EDV+RAV +A++   +  W   TA ERS+I+ R  D+L   NDE+A LET D GK + +++  ++     +  YYAG    ++G   P      V T  EP+GV   I  WN+
Sbjct:    8 QLYIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQG--QKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPSLEGSQIPLRETSFVYTRREPLGVVAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_ECO57 (Betaine aldehyde dehydrogenase OS=Escherichia coli O157:H7 GN=betB PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            QL I+G +  + SG+TF T++P  G+V+  V     EDV+RAV +A++   +  W   TA ERS+I+ R  D+L   NDE+A LET D GK + +++  ++     +  YYAG    ++G   P      V T  EP+GV   I  WN+
Sbjct:    8 QLYIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQG--QKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPSLEGSQIPLRETSFVYTRREPLGVVAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_ECO27 (Betaine aldehyde dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            QL I+G +  + SG+TF T++P  G+V+  V     EDV+RAV +A++   +  W   TA ERS+I+ R  D+L   NDE+A LET D GK + +++  ++     +  YYAG    ++G   P      V T  EP+GV   I  WN+
Sbjct:    8 QLYIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQG--QKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGCQIPLRETSFVYTRREPLGVVAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_ECO24 (Betaine aldehyde dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=betB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            QL I+G +  + SG+TF T++P  G+V+  V     EDV+RAV +A++   +  W   TA ERS+I+ R  D+L   NDE+A LET D GK + +++  ++     +  YYAG    ++G   P      V T  EP+GV   I  WN+
Sbjct:    8 QLYIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQG--QKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPSLEGSQIPLRETSFVYTRREPLGVVAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_SHIF8 (Betaine aldehyde dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=betB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            QL I+G +  + SG+TF T++P  G+V+  V     EDV+RAV +A++   +  W   TA ERS+I+ R  D+L   NDE+A LET D GK + +++  ++     +  YYAG    ++G   P      V T  EP+GV   I  WN+
Sbjct:    8 QLYIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQG--QKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIPLRETSFVYTRREPLGVVAGIGAWNY 154          
The following BLAST results are available for this feature:
BLAST of FC930065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
BETB_XANCP1.627e-2236.49Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_XANCB1.627e-2236.49Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_XANC81.627e-2236.49Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_ECOSE1.627e-2236.91Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO8A1.627e-2236.91Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO5E1.627e-2236.91Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO571.627e-2236.91Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO271.627e-2236.91Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO241.627e-2236.91Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_SHIF82.125e-2236.91Betaine aldehyde dehydrogenase OS=Shigella flexner... [more]

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Properties
Property NameValue
Genbank descriptionC34003D08EF PostHarvC1 Citrus clementina cDNA clone C34003D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930065 ID=FC930065; Name=FC930065; organism=Citrus clementina; type=EST; length=698bp
CACAAGAGAGGAGGAGAGGAAAAAAAAAAAAAGATAAAAATTAAAGTTGT
GATGGCTGCAAGAAGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTT
CTTCACCTACTCTGTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCT
GCTGCTGCTGCTGCCGCCTCCTGCGGATACAGCACGGTTTCTTCTGCTGC
TGCTGCTGCTGAAGATCCAATTACTCCGCCTGTTAAAGTTGATTATACTC
AGCTTCTAATTAATGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTT
CCCACATTAGACCCCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGG
TGAGGCTGAAGACGTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTG
ATGAAGGACCGTGGCCTAGGAAGACTGCTTATGAAAGGTCAAAAATAATT
TTGCGCTTCGCTGATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCT
TGAGACTTGGGATAACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAG
TACCAATGACCACGCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAG
ATTCAGGGTCTCACTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTT
GCACGAACCAATTGGTGTAGCAGGTCAAATTATCCCATGGAACTTTCC
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