FC930101

Overview
NameFC930101
Unique NameFC930101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14052 contig Ccv1_Contig14052:33..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: BRL3_ARATH (Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.939e-20
Identity = 50/128 (39.06%), Postives = 68/128 (53.12%), Query Frame = 3
Query:  261 AVKVQPIEVPA--ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            ++ V   E P   ++   L E T  F  +++IG G +G VY   L  G   AIKKL   + Q D EF+A++  + ++KH N V LLGYC  G  R+L YE+   GSL  +LH  K  KG   G  L W
Sbjct:  833 SINVATFEKPLRKLTFAHLLEATNGFSADSMIGSGGFGDVYKAKLADGSVVAIKKLIQVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKYGSLETVLH-EKTKKG---GIFLDW 956          

HSP 2 Score: 32.3426 bits (72), Expect = 1.939e-20
Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            +IA+GAA+GL +LH    PHII
Sbjct:  961 KIAIGAARGLAFLHHSCIPHII 982          

HSP 3 Score: 22.3274 bits (46), Expect = 1.939e-20
Identity = 9/27 (33.33%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  133 ASAVVKKMICIKLLTMAMHTWLKVQQE 213
            ++ +V   +CI +L MA++   KVQ++
Sbjct:  778 SAGIVFSFMCIVMLIMALYRARKVQKK 804          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: BRL2_ARATH (Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.218e-20
Identity = 47/106 (44.34%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  294 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHG-RKGVK 605
            +   +L E T  F   ++IG G +G V+   LK G + AIKKL   S Q D EF+A++  + ++KH N V LLGYC  G  R+L YEF   GSL ++LHG R G K
Sbjct:  826 LKFSQLIEATNGFSAASMIGHGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKIGEERLLVYEFMQYGSLEEVLHGPRTGEK 931          

HSP 2 Score: 30.4166 bits (67), Expect = 2.218e-20
Identity = 14/22 (63.64%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            +IA GAAKGL +LH    PHII
Sbjct:  942 KIAKGAAKGLCFLHHNCIPHII 963          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.777e-20
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  267 KVQPIEVPAISVDE-----LKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD---ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH 587
            K  P  +P  SV       L++ TE+F    LIG G  G VY   L +G   A+KKLD   + +Q D EF+  V+ +  ++H N V+L+GYC +   R+L YE+ SNG+L D LH
Sbjct:  459 KTSPKRLPLTSVKHYSIASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLH 573          

HSP 2 Score: 33.113 bits (74), Expect = 3.777e-20
Identity = 16/41 (39.02%), Postives = 25/41 (60.98%), Query Frame = 2
Query:  590 EERCKRSSAWSCFVMATASEIAVGAAKGLEYLHEKADPHII 712
            ++  K+  +W+     T   +A+GAA+ LEYLHE  +P II
Sbjct:  575 DDEFKKKLSWN-----TRVSMALGAARALEYLHEVCEPPII 610          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.920e-20
Identity = 44/109 (40.37%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  270 VQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPD---EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH 587
            V P  V   SV +L+  T +F  + L+GEG++GRVY      G   A+KK+D+S  P    ++F+  VS ++ L H N  +L+GYC +    ++ YEF  NGSLHD LH
Sbjct:  396 VVPSNVRLYSVADLQIATGSFSVDNLLGEGTFGRVYRAEFDDGKVLAVKKIDSSALPHGMTDDFIEMVSKIANLDHPNVTKLVGYCAEHGQHLVVYEFHKNGSLHDFLH 504          

HSP 2 Score: 30.0314 bits (66), Expect = 4.920e-20
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            +IA+G A+ LEYLHE   P I+
Sbjct:  520 KIALGTARALEYLHEVCSPSIV 541          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.920e-20
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 3
Query:  258 QAVKVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPD---EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH 587
            +A  V P  V   +V +L+  T +F  + L+GEG++GRVY    + G   A+KK+D+S  P    ++F   VS ++ L HEN  +L GYC +    ++ YEF  NGSLHD LH
Sbjct:  395 KAAVVVPSNVNTYTVSDLQVATNSFSVDNLLGEGTFGRVYRAQFEDGKVLAVKKIDSSALPTDTADDFTEIVSKIAHLDHENVTKLDGYCSEHGQHLVVYEFHRNGSLHDFLH 507          

HSP 2 Score: 30.0314 bits (66), Expect = 4.920e-20
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            +IA+G A+ LEYLHE   P I+
Sbjct:  523 KIALGTARALEYLHEVCSPSIV 544          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.083e-19
Identity = 47/107 (43.93%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  276 PIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD---ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH 587
            PI     +V  L+  T +F    +IGEGS GRVY     +G   AIKK+D    S Q ++ FL  VS +SRL+H N V L GYC +   R+L YE+  NG+L D LH
Sbjct:  377 PITASQYTVSSLQVATNSFSQENIIGEGSLGRVYRAEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHPNIVPLAGYCTEHGQRLLVYEYVGNGNLDDTLH 483          

HSP 2 Score: 29.261 bits (64), Expect = 1.083e-19
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            ++A+G AK LEYLHE   P I+
Sbjct:  499 KVALGTAKALEYLHEVCLPSIV 520          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.400e-19
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKG 599
            EL+  T       +IGEG YG VY GIL  G   A+K L  ++ Q ++EF  +V ++ R++H+N V+LLGYCV+G  R+L Y+F  NG+L   +HG  G
Sbjct:  146 ELEAATNGLCEENVIGEGGYGIVYRGILTDGTKVAVKNLLNNRGQAEKEFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYDFVDNGNLEQWIHGDVG 244          

HSP 2 Score: 28.4906 bits (62), Expect = 2.400e-19
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 2
Query:  650 IAVGAAKGLEYLHEKADPHII 712
            I +G AKGL YLHE  +P ++
Sbjct:  257 IILGMAKGLAYLHEGLEPKVV 277          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5613_ARATH (Probable receptor-like protein kinase At5g61350 OS=Arabidopsis thaliana GN=At5g61350 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.013e-19
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKK-LDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            EL+  T+NF  NA+ G G +G+VY G +  G   AIK+   +S+Q   EF  ++ M+S+L+H + V L+G+C +    +L YE+ SNG L D L+G K      P P LSW
Sbjct:  517 ELQTATQNFDENAVCGVGGFGKVYIGEIDGGTQVAIKRGSQSSEQGINEFQTEIQMLSKLRHRHLVSLIGFCDENKEMILVYEYMSNGPLRDHLYGSK-ENDPNPIPTLSW 626          

HSP 2 Score: 26.9498 bits (58), Expect = 4.013e-19
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            EI +G+A+GL YLH  A   II
Sbjct:  631 EICIGSARGLHYLHTGAAQGII 652          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.769e-19
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 3
Query:  285 VPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHD 578
            V + +  EL   T+NF ++  IG+G YG+VY G L SG   AIK+  + S Q ++EFL ++ ++SRL H N V LLG+C +   ++L YE+  NG+L D
Sbjct:  610 VKSFTYAELALATDNFNSSTQIGQGGYGKVYKGTLGSGTVVAIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLLGFCDEEGEQMLVYEYMENGTLRD 708          

HSP 2 Score: 28.8758 bits (63), Expect = 6.769e-19
Identity = 12/20 (60.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  650 IAVGAAKGLEYLHEKADPHI 709
            IA+G+AKG+ YLH +A+P I
Sbjct:  726 IALGSAKGILYLHTEANPPI 745          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.488e-18
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = 3
Query:  285 VPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGR 593
            V   +  EL   T +F   + IG G YG+VY G L  G   A+K+ +  S Q  +EF  ++ ++SRL H N V LLGYC     ++L YE+  NGSL D L  R
Sbjct:  616 VKGYNFTELDSATSSFSDLSQIGRGGYGKVYKGHLPGGLVVAVKRAEQGSLQGQKEFFTEIELLSRLHHRNLVSLLGYCDQKGEQMLVYEYMPNGSLQDALSAR 719          

HSP 2 Score: 33.113 bits (74), Expect = 1.488e-18
Identity = 15/34 (44.12%), Postives = 23/34 (67.65%), Query Frame = 2
Query:  632 MATASEIAVGAAKGLEYLHEKADPHIIIAILSPA 733
            +A    IA+G+A+G+ YLH +ADP II   + P+
Sbjct:  726 LALRLRIALGSARGILYLHTEADPPIIHRDIKPS 759          
The following BLAST results are available for this feature:
BLAST of FC930101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
BRL3_ARATH1.939e-2039.06Receptor-like protein kinase BRI1-like 3 OS=Arabid... [more]
BRL2_ARATH2.218e-2044.34Serine/threonine-protein kinase BRI1-like 2 OS=Ara... [more]
SRF3_ARATH3.777e-2040.00Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
SRF6_ARATH4.920e-2040.37Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
SRF7_ARATH4.920e-2039.82Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
SRF8_ARATH1.083e-1943.93Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
Y1154_ARATH2.400e-1943.43Probable serine/threonine-protein kinase At1g01540... [more]
Y5613_ARATH4.013e-1940.54Probable receptor-like protein kinase At5g61350 OS... [more]
Y1684_ARATH6.769e-1942.42Probable LRR receptor-like serine/threonine-protei... [more]
Y5374_ARATH1.488e-1840.38Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC34003G09EF PostHarvC1 Citrus clementina cDNA clone C34003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930101 ID=FC930101; Name=FC930101; organism=Citrus clementina; type=EST; length=740bp
GATCGTCGTCTTATCCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATT
CAAAATATCCAGCTCGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAG
AGGGGCATTATTGTGGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAG
AAGATGATATGCATAAAGCTGCTGACAATGGCAATGCATACATGGTTAAA
AGTTCAGCAGGAACTGATGGAGCCTATCATGCATCTGAAGCAGCACCTAA
GGGTGCTCAAGCTGTGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAG
TGGATGAATTGAAGGAAATTACTGAGAACTTTGGGACTAATGCTTTGATT
GGAGAAGGTTCATATGGAAGAGTATATTATGGGATTCTTAAAAGTGGACA
TGCTGCAGCAATAAAAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGT
TTTTAGCACAGGTTTCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTT
CAGCTGCTCGGGTATTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGA
GTTTGCATCTAATGGATCTCTTCATGATATTCTTCATGGGAGGAAAGGTG
TAAAAGGAGCTCAGCCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAA
TTGCTGTAGGGGCTGCGAAAGGGCTTGAATACTTGCATGAGAAGGCAGAT
CCTCATATTATCATCGCGATATTAAGTCCAGCATGTACTA
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