FC930101

Overview
NameFC930101
Unique NameFC930101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14052 contig Ccv1_Contig14052:33..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: LRKA1_ARATH (Lectin-domain containing receptor kinase A4.1 OS=Arabidopsis thaliana GN=LECRKA4.1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 37/111 (33.33%), Postives = 61/111 (54.95%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            +L   T+ F    +IG G +G V+ G L +    A+KK+  +S+Q   EF+A++  + +L+H+N V L G+C      +L Y++  NGSL  +L+        + G VLSW
Sbjct:  359 DLYVATDGFKKTGIIGTGGFGTVFKGKLPNSDPIAVKKIIPSSRQGVREFVAEIESLGKLRHKNLVNLQGWCKHKNDLLLIYDYIPNGSLDSLLY----TVPRRSGAVLSW 465          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: CRK13_ARATH (Cysteine-rich receptor-like protein kinase 13 OS=Arabidopsis thaliana GN=CRK13 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 4.770e-11
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  309 LKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDIL 584
            ++  T NF     +G G  G V+ G L  G   A+K+L + ++Q  +EF  +V +V++L+H N V+LLG+ V G  +++ YE+  N SL  IL
Sbjct:  353 IETATNNFSER--LGHGGSGHVFKGRLPDGKEIAVKRLSEKTEQSKKEFKNEVVLVAKLQHRNLVRLLGFSVKGEEKIIVYEYLPNRSLDYIL 443          

HSP 2 Score: 24.6386 bits (52), Expect = 4.770e-11
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            +I  G A+G+ YLH+ + P II
Sbjct:  459 KIIGGTARGILYLHQDSQPTII 480          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: RLK5_ARATH (Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 45/119 (37.82%), Postives = 63/119 (52.94%), Query Frame = 3
Query:  315 EITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDAS-KQPDEE----------FLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHG-RKGVKGAQPGPVLSW 635
            EI +      +IG GS G+VY   L+ G   A+KKL+ S K  D+E          F A+V  +  ++H++ V+L   C  G  ++L YE+  NGSL D+LHG RKG      G VL W
Sbjct:  678 EIADCLDEKNVIGFGSSGKVYKVELRGGEVVAVKKLNKSVKGGDDEYSSDSLNRDVFAAEVETLGTIRHKSIVRLWCCCSSGDCKLLVYEYMPNGSLADVLHGDRKG------GVVLGW 790          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: CRK17_ARATH (Cysteine-rich receptor-like protein kinase 17 OS=Arabidopsis thaliana GN=CRK17 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = 3
Query:  273 QPIEVPAISVD------ELKEI---TENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSL 572
            Q IE+P +  +      +LK I   T NF  +  +G G +G VY G+L +G   A+K+L   S Q + EF  +V +V++L+H N V+LLG+ + G  ++L YEF  N SL
Sbjct:  331 QEIELPIVLNEAESVQFDLKTIEAATGNFSEHNKLGAGGFGEVYKGMLLNGTEIAVKRLSKTSGQGEIEFKNEVVVVAKLQHINLVRLLGFSLQGEEKLLVYEFVPNKSL 440          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y1570_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana GN=At1g05700 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 6.150e-11
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 3
Query:  315 EITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGR 593
            ++T NFG   ++G+G +G VY+G   +   A     + S Q  +EF ++V ++ R+ H N   L+GY  +G    L YEF +NG++ D L G+
Sbjct:  567 KMTNNFGQ--VLGKGGFGTVYHGFYDNLQVAVKLLSETSAQGFKEFRSEVEVLVRVHHVNLTALIGYFHEGDQMGLIYEFMANGNMADHLAGK 657          

HSP 2 Score: 26.9498 bits (58), Expect = 6.150e-11
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            +IA+ AA+GLEYLH    P I+
Sbjct:  669 QIALDAAQGLEYLHCGCKPPIV 690          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: WAKLR_ARATH (Wall-associated receptor kinase-like 21 OS=Arabidopsis thaliana GN=WAKL21 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.205e-11
Identity = 37/118 (31.36%), Postives = 60/118 (50.85%), Query Frame = 3
Query:  285 VPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPD-EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            VP  +  E+++ T++F    ++G G+YG VY G   +    AIK+L        ++ + ++ ++S + H N V+LLG C       L YEF  NG+L+  L   +G       P LSW
Sbjct:  297 VPFYTYKEIEKATDSFSDKNMLGTGAYGTVYAGEFPNSSCVAIKRLKHKDTTSIDQVVNEIKLLSSVSHPNLVRLLGCCFADGEPFLVYEFMPNGTLYQHLQHERG------QPPLSW 408          

HSP 2 Score: 21.1718 bits (43), Expect = 6.205e-11
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1
Query:  709 YHRDIKSS 732
            YHRDIKSS
Sbjct:  434 YHRDIKSS 441          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: PUB34_ARATH (U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 3
Query:  297 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAA-IKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRK 596
            +++E+   TE F    +IGEG YG+VY   L S  AA  + +LD + +  +EFL +V ++S+L+H + V LLG C +  +  L YE+  NGSL + +  RK
Sbjct:  431 TIEEIVTATEGFSPEKVIGEGGYGKVYQCSLDSTPAAVKVVRLD-TPEKKQEFLKEVEVLSQLRHPHVVLLLGACPE--NGCLVYEYLENGSLEEYIFHRK 528          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: CRK42_ARATH (Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 37/112 (33.04%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  303 DELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQP-DEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            + L++ T+ F    ++G+G  G V+ GIL +G   A+K+L  + +   EEF  +V+++S ++H+N V+LLG  ++G   +L YE+  N SL   L      K      VL+W
Sbjct:  306 ETLEKATDYFSHKKMLGQGGNGTVFLGILPNGKNVAVKRLVFNTRDWVEEFFNEVNLISGIQHKNLVKLLGCSIEGPESLLVYEYVPNKSLDQFLFDESQSK------VLNW 411          
The following BLAST results are available for this feature:
BLAST of FC930101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
LRKA1_ARATH3.180e-1133.33Lectin-domain containing receptor kinase A4.1 OS=A... [more]
CRK13_ARATH4.770e-1136.56Cysteine-rich receptor-like protein kinase 13 OS=A... [more]
RLK5_ARATH5.424e-1137.82Receptor-like protein kinase 5 OS=Arabidopsis thal... [more]
CRK17_ARATH5.424e-1138.18Cysteine-rich receptor-like protein kinase 17 OS=A... [more]
Y1570_ARATH6.150e-1134.41Probable LRR receptor-like serine/threonine-protei... [more]
WAKLR_ARATH6.205e-1131.36Wall-associated receptor kinase-like 21 OS=Arabido... [more]
PUB34_ARATH9.252e-1138.61U-box domain-containing protein 34 OS=Arabidopsis ... [more]
CRK42_ARATH9.252e-1133.04Cysteine-rich receptor-like protein kinase 42 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC34003G09EF PostHarvC1 Citrus clementina cDNA clone C34003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930101 ID=FC930101; Name=FC930101; organism=Citrus clementina; type=EST; length=740bp
GATCGTCGTCTTATCCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATT
CAAAATATCCAGCTCGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAG
AGGGGCATTATTGTGGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAG
AAGATGATATGCATAAAGCTGCTGACAATGGCAATGCATACATGGTTAAA
AGTTCAGCAGGAACTGATGGAGCCTATCATGCATCTGAAGCAGCACCTAA
GGGTGCTCAAGCTGTGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAG
TGGATGAATTGAAGGAAATTACTGAGAACTTTGGGACTAATGCTTTGATT
GGAGAAGGTTCATATGGAAGAGTATATTATGGGATTCTTAAAAGTGGACA
TGCTGCAGCAATAAAAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGT
TTTTAGCACAGGTTTCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTT
CAGCTGCTCGGGTATTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGA
GTTTGCATCTAATGGATCTCTTCATGATATTCTTCATGGGAGGAAAGGTG
TAAAAGGAGCTCAGCCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAA
TTGCTGTAGGGGCTGCGAAAGGGCTTGAATACTTGCATGAGAAGGCAGAT
CCTCATATTATCATCGCGATATTAAGTCCAGCATGTACTA
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