FC930101

Overview
NameFC930101
Unique NameFC930101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14052 contig Ccv1_Contig14052:33..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: CRI4_MAIZE (Putative receptor protein kinase CRINKLY4 OS=Zea mays GN=CR4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.490e-18
Identity = 42/102 (41.18%), Postives = 69/102 (67.65%), Query Frame = 3
Query:  297 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKK-LDAS--KQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGR 593
            S +EL++ T  F  ++ +G+GS+  V+ GIL+ G   A+K+ + AS  K+  +EF  ++ ++SRL H + + LLGYC DG+ R+L YEF ++GSL+  LHG+
Sbjct:  494 SYEELEQATGGFSEDSQVGKGSFSCVFKGILRDGTVVAVKRAIKASDVKKSSKEFHNELDLLSRLNHAHLLNLLGYCEDGSERLLVYEFMAHGSLYQHLHGK 595          

HSP 2 Score: 28.1054 bits (61), Expect = 1.490e-18
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  650 IAVGAAKGLEYLHEKADPHII 712
            IAV AA+G+EYLH  A P +I
Sbjct:  611 IAVQAARGIEYLHGYACPPVI 631          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.932e-18
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 3
Query:  279 IEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHG 590
            ++  + ++ ++K  T NF     IGEG +G VY G+L  G   A+K+L + SKQ + EF+ ++ M+S L+H N V+L G C++G   +L YE+  N SL   L G
Sbjct:  652 LQTGSFTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFG 756          

HSP 2 Score: 29.261 bits (64), Expect = 1.932e-18
Identity = 12/26 (46.15%), Postives = 19/26 (73.08%), Query Frame = 2
Query:  635 ATASEIAVGAAKGLEYLHEKADPHII 712
            +T ++I +G AKGL YLHE++   I+
Sbjct:  767 STRNKICIGIAKGLAYLHEESRLKIV 792          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.512e-18
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 3
Query:  279 IEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHG 590
            ++  + ++ ++K  T NF     IGEG +G VY G+L  G   A+K+L + SKQ + EF+ ++ M+S L+H N V+L G C++G   +L YE+  N SL   L G
Sbjct:  650 LQTGSFTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFG 754          

HSP 2 Score: 28.8758 bits (63), Expect = 2.512e-18
Identity = 11/26 (42.31%), Postives = 19/26 (73.08%), Query Frame = 2
Query:  635 ATASEIAVGAAKGLEYLHEKADPHII 712
            +T +++ +G AKGL YLHE++   I+
Sbjct:  765 STRNKVCIGIAKGLAYLHEESRLKIV 790          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y2214_ARATH (Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.260e-18
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  297 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGR 593
            S+ EL+E+T+NF  + +IG G +G VY G +  G   AIK+ +  S+Q   EF  ++ M+S+L+H + V L+GYC +    +L YE+ SNG   D L+G+
Sbjct:  514 SLSELQEVTKNFDASEIIGVGGFGNVYIGTIDDGTQVAIKRGNPQSEQGITEFHTEIQMLSKLRHRHLVSLIGYCDENAEMILVYEYMSNGPFRDHLYGK 613          

HSP 2 Score: 26.5646 bits (57), Expect = 4.260e-18
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLH 688
            EI +GAA+GL YLH
Sbjct:  625 EICIGAARGLHYLH 638          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y4391_ARATH (Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.199e-18
Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  297 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGR 593
            S+ EL+E T+NF  + +IG G +G VY G L  G   A+K+ +  S+Q   EF  ++ M+S+L+H + V L+GYC + +  +L YEF SNG   D L+G+
Sbjct:  515 SLSELQEATKNFEASQIIGVGGFGNVYIGTLDDGTKVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENSEMILVYEFMSNGPFRDHLYGK 614          

HSP 2 Score: 25.409 bits (54), Expect = 7.199e-18
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLH 688
            EI +G+A+GL YLH
Sbjct:  626 EICIGSARGLHYLH 639          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5838_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.250e-18
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 3
Query:  249 KGAQAVKVQPIE--VPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH 587
            KG + VKV   +  V  + + +L + TE F  + +I  G  G +Y G L+ G    IK+L  S++ ++EF A++  +  +K+ N V LLGYCV    R+L YE+ +NG L+D LH
Sbjct:  274 KGQKGVKVFMFKKSVSKMKLSDLMKATEEFKKDNIIATGRTGTMYKGRLEDGSLLMIKRLQDSQRSEKEFDAEMKTLGSVKNRNLVPLLGYCVANKERLLMYEYMANGYLYDQLH 388          

HSP 2 Score: 32.3426 bits (72), Expect = 7.250e-18
Identity = 14/30 (46.67%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHIIIAILSPAC 736
            +IA+G AKGL +LH   +P II   +S  C
Sbjct:  405 KIAIGTAKGLAWLHHSCNPRIIHRNISSKC 434          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: PSYR1_ARATH (Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.320e-18
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  282 EVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH 587
            EV  +++ EL + T+NF    +IG G +G VY   L +G   A+KKL       ++EF A+V ++SR KHEN V L GYCV  ++R+L Y F  NGSL   LH
Sbjct:  787 EVKDLTIFELLKATDNFSQANIIGCGGFGLVYKATLDNGTKLAVKKLTGDYGMMEKEFKAEVEVLSRAKHENLVALQGYCVHDSARILIYSFMENGSLDYWLH 889          

HSP 2 Score: 27.7202 bits (60), Expect = 9.320e-18
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  659 GAAKGLEYLHEKADPHII 712
            GA+ GL Y+H+  +PHI+
Sbjct:  909 GASSGLAYMHQICEPHIV 926          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: PSKR2_ARATH (Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.213e-17
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = 3
Query:  294 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDAS-KQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGR 593
            +SV+EL + T NF    +IG G +G VY      G  AA+K+L     Q + EF A+V  +SR +H+N V L GYC  G  R+L Y F  NGSL   LH R
Sbjct:  742 LSVEELLKSTNNFSQANIIGCGGFGLVYKANFPDGSKAAVKRLSGDCGQMEREFQAEVEALSRAEHKNLVSLQGYCKHGNDRLLIYSFMENGSLDYWLHER 842          

HSP 2 Score: 30.4166 bits (67), Expect = 1.213e-17
Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            +IA GAA+GL YLH+  +P++I
Sbjct:  856 KIAQGAARGLAYLHKVCEPNVI 877          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.220e-17
Identity = 52/161 (32.30%), Postives = 80/161 (49.69%), Query Frame = 3
Query:  138 GCCEEDDMHKAADNGNAYMVKSSAGTDG-------AYHASEAAPKGAQAVKVQPIE-VPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEE---FLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH 587
            G   + + H+   NGNA  +   +           A   +EA+ K   +    P+  V   +V  L++ T +F    LIG G  G VY   L  G   A++KLD      EE   FL  V+ + R++H N VQL+G+C + + R+L +E+  NG+LHD+LH
Sbjct:  406 GSESKQESHEIDMNGNAMDLMHPSSIPPIKRVIAKATEPAEASLKRTTSKSHGPLTAVKHFTVASLQQHTNSFSHENLIGTGMLGSVYRAELPGGKLFAVRKLDKKSPNHEEEGKFLELVNNIDRIRHANIVQLVGFCSEHSQRLLIHEYCRNGTLHDLLH 566          

HSP 2 Score: 30.8018 bits (68), Expect = 1.220e-17
Identity = 17/38 (44.74%), Postives = 22/38 (57.89%), Query Frame = 2
Query:  590 EERCKRSSAWSCFVMATASEIAVGAAKGLEYLHEKADP 703
            ++R K   +W+  V      IA+ AAK LEYLHE  DP
Sbjct:  568 DDRLKIELSWNVRV-----RIALEAAKALEYLHEICDP 600          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.572e-17
Identity = 42/129 (32.56%), Postives = 69/129 (53.49%), Query Frame = 3
Query:  225 YHASEAAPKGAQAVKVQPIEVPAISV--DELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGV 602
            Y  S +  +   ++ +   E P + V   ++ E T++F    +IG+G +G VY   L      A+KKL  +K Q + EF+A++  + ++KH N V LLGYC     ++L YE+  NGSL   L  + G+
Sbjct:  880 YFLSGSRSREPLSINIAMFEQPLLKVRLGDIVEATDHFSKKNIIGDGGFGTVYKACLPGEKTVAVKKLSEAKTQGNREFMAEMETLGKVKHPNLVSLLGYCSFSEEKLLVYEYMVNGSLDHWLRNQTGM 1008          

HSP 2 Score: 31.187 bits (69), Expect = 1.572e-17
Identity = 14/22 (63.64%), Postives = 17/22 (77.27%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            +IAVGAA+GL +LH    PHII
Sbjct: 1019 KIAVGAARGLAFLHHGFIPHII 1040          
The following BLAST results are available for this feature:
BLAST of FC930101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
CRI4_MAIZE1.490e-1841.18Putative receptor protein kinase CRINKLY4 OS=Zea m... [more]
Y5343_ARATH1.932e-1838.10Probable LRR receptor-like serine/threonine-protei... [more]
Y5344_ARATH2.512e-1838.10Probable LRR receptor-like serine/threonine-protei... [more]
Y2214_ARATH4.260e-1840.00Probable receptor-like protein kinase At2g21480 OS... [more]
Y4391_ARATH7.199e-1841.00Probable receptor-like protein kinase At4g39110 OS... [more]
Y5838_ARATH7.250e-1837.39Probably inactive leucine-rich repeat receptor-lik... [more]
PSYR1_ARATH9.320e-1843.69Tyrosine-sulfated glycopeptide receptor 1 OS=Arabi... [more]
PSKR2_ARATH1.213e-1743.56Phytosulfokine receptor 2 OS=Arabidopsis thaliana ... [more]
SRF1_ARATH1.220e-1732.30Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
EXS_ARATH1.572e-1732.56Leucine-rich repeat receptor protein kinase EXS OS... [more]

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Properties
Property NameValue
Genbank descriptionC34003G09EF PostHarvC1 Citrus clementina cDNA clone C34003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930101 ID=FC930101; Name=FC930101; organism=Citrus clementina; type=EST; length=740bp
GATCGTCGTCTTATCCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATT
CAAAATATCCAGCTCGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAG
AGGGGCATTATTGTGGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAG
AAGATGATATGCATAAAGCTGCTGACAATGGCAATGCATACATGGTTAAA
AGTTCAGCAGGAACTGATGGAGCCTATCATGCATCTGAAGCAGCACCTAA
GGGTGCTCAAGCTGTGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAG
TGGATGAATTGAAGGAAATTACTGAGAACTTTGGGACTAATGCTTTGATT
GGAGAAGGTTCATATGGAAGAGTATATTATGGGATTCTTAAAAGTGGACA
TGCTGCAGCAATAAAAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGT
TTTTAGCACAGGTTTCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTT
CAGCTGCTCGGGTATTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGA
GTTTGCATCTAATGGATCTCTTCATGATATTCTTCATGGGAGGAAAGGTG
TAAAAGGAGCTCAGCCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAA
TTGCTGTAGGGGCTGCGAAAGGGCTTGAATACTTGCATGAGAAGGCAGAT
CCTCATATTATCATCGCGATATTAAGTCCAGCATGTACTA
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