FC930101

Overview
NameFC930101
Unique NameFC930101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14052 contig Ccv1_Contig14052:33..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: ACR4_ARATH (Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.581e-17
Identity = 38/100 (38.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:  303 DELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKK--LDASKQPDE-EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGR 593
            +EL++  + F   +++G+GS+  VY G+L+ G   A+K+  + + KQ +  EF  ++ ++SRL H + + LLGYC +   R+L YEF ++GSLH+ LHG+
Sbjct:  503 EELEKAADGFKEESIVGKGSFSCVYKGVLRDGTTVAVKRAIMSSDKQKNSNEFRTELDLLSRLNHAHLLSLLGYCEECGERLLVYEFMAHGSLHNHLHGK 602          

HSP 2 Score: 28.1054 bits (61), Expect = 1.581e-17
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  650 IAVGAAKGLEYLHEKADPHII 712
            IAV AA+G+EYLH  A P +I
Sbjct:  618 IAVQAARGIEYLHGYACPPVI 638          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.607e-17
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGIL-KSGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH 587
            EL E T NF ++  +GEG +G+V+ G + K     AIK+LD +  Q   EF+ +V  +S   H N V+L+G+C +G  R+L YE+   GSL D LH
Sbjct:   95 ELAEATGNFRSDCFLGEGGFGKVFKGTIEKLDQVVAIKQLDRNGVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPQGSLEDHLH 190          

HSP 2 Score: 33.8834 bits (76), Expect = 1.607e-17
Identity = 14/25 (56.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKADPHII 712
            T  +IA GAA+GLEYLH++  P +I
Sbjct:  203 TRMKIAAGAARGLEYLHDRMTPPVI 227          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 3.464e-17
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRK 596
            ELK  T++F  +  +GEG +G VY G L  G   A+K L   S+Q   +F+A++  +S ++H N V+L G C +G  R+L YE+  NGSL   L G K
Sbjct:  685 ELKSATQDFDPSNKLGEGGFGPVYKGKLNDGREVAVKLLSVGSRQGKGQFVAEIVAISAVQHRNLVKLYGCCYEGEHRLLVYEYLPNGSLDQALFGEK 782          

HSP 2 Score: 29.261 bits (64), Expect = 3.464e-17
Identity = 13/26 (50.00%), Postives = 18/26 (69.23%), Query Frame = 2
Query:  635 ATASEIAVGAAKGLEYLHEKADPHII 712
            +T  EI +G A+GL YLHE+A   I+
Sbjct:  789 STRYEICLGVARGLVYLHEEARLRIV 814          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.493e-17
Identity = 41/104 (39.42%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  285 VPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDAS---KQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH 587
            V A S+ +L+     F  N L+GEG+ GRVY    + G   A+K++D+S   K   EEF   VS +S + H+N  +L+GYC +    +L YE+ ++GSLH  LH
Sbjct:  400 VKAFSLADLQNTASCFSPNRLLGEGTIGRVYKAKFQDGRKFAVKEIDSSLLGKGNPEEFSHIVSSISSIHHKNMAELVGYCSEQGRNMLVYEYFTSGSLHRFLH 503          

HSP 2 Score: 30.0314 bits (66), Expect = 3.493e-17
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKADPHII 712
            T   IA+G AK +EYLHE   P ++
Sbjct:  516 TRIRIALGTAKAIEYLHETCSPPLV 540          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.503e-17
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRK 596
            ELK  T++F  +  +GEG +G VY G L  G   A+K L   S+Q   +F+A++  +S + H N V+L G C +G  R+L YE+  NGSL   L G K
Sbjct:  686 ELKSATQDFDPSNKLGEGGFGPVYKGNLNDGRVVAVKLLSVGSRQGKGQFVAEIVAISSVLHRNLVKLYGCCFEGEHRMLVYEYLPNGSLDQALFGDK 783          

HSP 2 Score: 30.4166 bits (67), Expect = 4.503e-17
Identity = 13/26 (50.00%), Postives = 18/26 (69.23%), Query Frame = 2
Query:  635 ATASEIAVGAAKGLEYLHEKADPHII 712
            +T  EI +G A+GL YLHE+A   I+
Sbjct:  790 STRYEICLGVARGLVYLHEEASVRIV 815          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.504e-17
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  279 IEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGR 593
            ++    ++ ++K  T+NF     IGEG +G VY G L  G   A+K+L A S+Q + EF+ ++ M+S L+H N V+L G CV+G   +L YE+  N  L   L G+
Sbjct:  661 LQTGTFTLRQIKAATDNFDVTRKIGEGGFGSVYKGELSEGKLIAVKQLSAKSRQGNREFVNEIGMISALQHPNLVKLYGCCVEGNQLILVYEYLENNCLSRALFGK 766          

HSP 2 Score: 25.7942 bits (55), Expect = 4.504e-17
Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = 2
Query:  635 ATASEIAVGAAKGLEYLHEKADPHII 712
            +T  +I +G AKGL +LHE++   I+
Sbjct:  777 STRKKIFLGIAKGLTFLHEESRIKIV 802          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.862e-17
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 3
Query:  285 VPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHG 590
            + + S+ ++K  T NF +   IGEG +G VY G L  G   A+K+L   SKQ + EFL ++ M+S L H N V+L G CV+G   +L YEF  N SL   L G
Sbjct:  609 IASFSLRQIKIATNNFDSANRIGEGGFGPVYKGKLFDGTIIAVKQLSTGSKQGNREFLNEIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSLARALFG 711          

HSP 2 Score: 27.335 bits (59), Expect = 5.862e-17
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKADPHII 712
            T  +I +G A+GL YLHE++   I+
Sbjct:  723 TRRKICIGVARGLAYLHEESRLKIV 747          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: ANX2_ARATH (Receptor-like protein kinase ANXUR2 OS=Arabidopsis thaliana GN=ANX2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.875e-17
Identity = 42/114 (36.84%), Postives = 67/114 (58.77%), Query Frame = 3
Query:  297 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            S+ E+K  T NF  + +IG G +G+VY G++  G   AIKK +  S+Q   EF  ++ ++SRL+H++ V L+GYC +G    L Y++ S G+L + L+  K        P L+W
Sbjct:  510 SLSEIKHGTHNFDESNVIGVGGFGKVYKGVIDGGTKVAIKKSNPNSEQGLNEFETEIELLSRLRHKHLVSLIGYCDEGGEMCLIYDYMSLGTLREHLYNTK-------RPQLTW 616          

HSP 2 Score: 29.261 bits (64), Expect = 5.875e-17
Identity = 14/22 (63.64%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            EIA+GAA+GL YLH  A   II
Sbjct:  621 EIAIGAARGLHYLHTGAKYTII 642          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.876e-17
Identity = 42/110 (38.18%), Postives = 70/110 (63.64%), Query Frame = 3
Query:  267 KVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGR 593
            K + +E+P I ++ + + TENF +   +G+G +G VY G L  G   A+K+L   S Q  +EF+ +V++++RL+H N VQ+LG C++G  ++L YE+  N SL   L G+
Sbjct:  507 KFEELELPLIEMETVVKATENFSSCNKLGQGGFGIVYKGRLLDGKEIAVKRLSKTSVQGTDEFMNEVTLIARLQHINLVQVLGCCIEGDEKMLIYEYLENLSLDSYLFGK 616          

HSP 2 Score: 21.9422 bits (45), Expect = 5.876e-17
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            +I  G A+GL YLH+ +   II
Sbjct:  629 DITNGVARGLLYLHQDSRFRII 650          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.965e-17
Identity = 50/126 (39.68%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  291 AISVDELKEITENFGTNALIGEGSYGRVYYGILK----------SGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            A + +ELK  T NF  ++L+GEG +G V+ G +           SG   A+KKL     Q  +E+L +V+ + +L H N V+L+GYCV+G +R+L YEF   GSL + L  R    GAQP   L+W
Sbjct:   70 AFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFRR----GAQP---LTW 188          

HSP 2 Score: 26.5646 bits (57), Expect = 5.965e-17
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  635 ATASEIAVGAAKGLEYLHE 691
            A   ++A+GAAKGL +LH+
Sbjct:  189 AIRMKVAIGAAKGLTFLHD 207          
The following BLAST results are available for this feature:
BLAST of FC930101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ACR4_ARATH1.581e-1738.00Serine/threonine-protein kinase-like protein ACR4 ... [more]
RLCK7_ARATH1.607e-1741.67Probable serine/threonine-protein kinase RLCKVII O... [more]
Y5614_ARATH3.464e-1740.82Probable LRR receptor-like serine/threonine-protei... [more]
SRF4_ARATH3.493e-1739.42Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
Y1561_ARATH4.503e-1740.82Probable LRR receptor-like serine/threonine-protei... [more]
Y1765_ARATH4.504e-1737.74Probable LRR receptor-like serine/threonine-protei... [more]
Y1534_ARATH5.862e-1742.72Probable LRR receptor-like serine/threonine-protei... [more]
ANX2_ARATH5.875e-1736.84Receptor-like protein kinase ANXUR2 OS=Arabidopsis... [more]
SRK6_BRAOE5.876e-1738.18Putative serine/threonine-protein kinase receptor ... [more]
APK2B_ARATH5.965e-1739.68Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC34003G09EF PostHarvC1 Citrus clementina cDNA clone C34003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930101 ID=FC930101; Name=FC930101; organism=Citrus clementina; type=EST; length=740bp
GATCGTCGTCTTATCCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATT
CAAAATATCCAGCTCGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAG
AGGGGCATTATTGTGGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAG
AAGATGATATGCATAAAGCTGCTGACAATGGCAATGCATACATGGTTAAA
AGTTCAGCAGGAACTGATGGAGCCTATCATGCATCTGAAGCAGCACCTAA
GGGTGCTCAAGCTGTGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAG
TGGATGAATTGAAGGAAATTACTGAGAACTTTGGGACTAATGCTTTGATT
GGAGAAGGTTCATATGGAAGAGTATATTATGGGATTCTTAAAAGTGGACA
TGCTGCAGCAATAAAAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGT
TTTTAGCACAGGTTTCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTT
CAGCTGCTCGGGTATTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGA
GTTTGCATCTAATGGATCTCTTCATGATATTCTTCATGGGAGGAAAGGTG
TAAAAGGAGCTCAGCCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAA
TTGCTGTAGGGGCTGCGAAAGGGCTTGAATACTTGCATGAGAAGGCAGAT
CCTCATATTATCATCGCGATATTAAGTCCAGCATGTACTA
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