FC930101

Overview
NameFC930101
Unique NameFC930101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14052 contig Ccv1_Contig14052:33..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: CRK41_ARATH (Cysteine-rich receptor-like protein kinase 41 OS=Arabidopsis thaliana GN=CRK41 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 7.677e-17
Identity = 41/109 (37.61%), Postives = 67/109 (61.47%), Query Frame = 3
Query:  249 KGAQAVKVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSL 572
            K  + + ++  ++  +  D ++  T +F  +  +GEG +G VY G+L  G   A+K+L   S Q D EF+ +VS+V++L+H N V+LLG+C+ G  R+L YEF  N SL
Sbjct:  317 KDLEELMIKDAQLLQLDFDTIRLATNDFSRDNQLGEGGFGAVYKGVLDYGEEIAVKRLSMKSGQGDNEFINEVSLVAKLQHRNLVRLLGFCLQGEERILIYEFFKNTSL 425          

HSP 2 Score: 22.3274 bits (46), Expect = 7.677e-17
Identity = 10/18 (55.56%), Postives = 11/18 (61.11%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHE 691
            T   I  G A+GL YLHE
Sbjct:  442 TRYRIISGVARGLLYLHE 459          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.691e-17
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQP--DEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            EL+  T+NF    ++G+G +G+VY G+L      A+K+L   + P  D  F  +V M+S   H N ++L+G+C   T R+L Y F  N SL    H  + +K     PVL W
Sbjct:  282 ELQLATDNFSEKNVLGQGGFGKVYKGVLPDNTKVAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSL---AHRLREIKAGD--PVLDW 388          

HSP 2 Score: 34.6538 bits (78), Expect = 7.691e-17
Identity = 15/25 (60.00%), Postives = 18/25 (72.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKADPHII 712
            T   IA+GAA+G EYLHE  +P II
Sbjct:  390 TRKRIALGAARGFEYLHEHCNPKII 414          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: PSKR1_ARATH (Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 9.893e-17
Identity = 41/101 (40.59%), Postives = 54/101 (53.47%), Query Frame = 3
Query:  294 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDAS-KQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGR 593
            +S D+L + T +F    +IG G +G VY   L  G   AIKKL     Q + EF A+V  +SR +H N V L G+C     R+L Y +  NGSL   LH R
Sbjct:  722 LSYDDLLDSTNSFDQANIIGCGGFGMVYKATLPDGKKVAIKKLSGDCGQIEREFEAEVETLSRAQHPNLVLLRGFCFYKNDRLLIYSYMENGSLDYWLHER 822          

HSP 2 Score: 36.5798 bits (83), Expect = 9.893e-17
Identity = 17/25 (68.00%), Postives = 18/25 (72.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKADPHII 712
            T   IA GAAKGL YLHE  DPHI+
Sbjct:  833 TRLRIAQGAAKGLLYLHEGCDPHIL 857          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.926e-17
Identity = 48/166 (28.92%), Postives = 79/166 (47.59%), Query Frame = 3
Query:  123 IMSCFGCC------EEDDMHKAADNGNAYMVKSSAGTDGAYHASEAAPKGAQAVKVQPIEVP---AISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHG 590
            I  C  CC      +     +   NG+ ++     G       S A+ K A A  +              E+ + T  F  ++L+G G +GRVY G L+ G   A+K+ +  S+Q   EF  ++ M+S+L+H + V L+GYC + +  +L YE+ +NG L   L+G
Sbjct:  432 IAVCCYCCLVASRKQRSTSPQEGGNGHPWLPLPLYGLSQTLTKSTASHKSATASCISLASTHLGRCFMFQEIMDATNKFDESSLLGVGGFGRVYKGTLEDGTKVAVKRGNPRSEQGMAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYG 597          

HSP 2 Score: 29.261 bits (64), Expect = 9.926e-17
Identity = 13/22 (59.09%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            EI +GAA+GL YLH  A   II
Sbjct:  610 EICIGAARGLHYLHTGASQSII 631          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: PSKR1_DAUCA (Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.285e-16
Identity = 45/115 (39.13%), Postives = 61/115 (53.04%), Query Frame = 3
Query:  294 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            +S+D++ + T +F    +IG G +G VY   L  G   AIK+L     Q D EF A+V  +SR +H N V LLGYC     ++L Y +  NGSL   LH +  V G    P L W
Sbjct:  731 LSLDDILKSTSSFNQANIIGCGGFGLVYKATLPDGTKVAIKRLSGDTGQMDREFQAEVETLSRAQHPNLVHLLGYCNYKNDKLLIYSYMDNGSLDYWLHEK--VDGP---PSLDW 840          

HSP 2 Score: 33.4982 bits (75), Expect = 1.285e-16
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKADPHII 712
            T   IA GAA+GL YLH+  +PHI+
Sbjct:  842 TRLRIARGAAEGLAYLHQSCEPHIL 866          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.288e-16
Identity = 45/123 (36.59%), Postives = 70/123 (56.91%), Query Frame = 3
Query:  270 VQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIK-KLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            ++ + V   +++ +++ TE + T  LIGEG +G VY G L  G   A+K +   S Q   EF  +++++S ++HEN V LLGYC +   ++L Y F SNGSL D L+G      A    +L W
Sbjct:  578 IKSVSVKPFTLEYIEQATEQYKT--LIGEGGFGSVYRGTLDDGQEVAVKVRSSTSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYGE-----ASKRKILDW 693          

HSP 2 Score: 25.7942 bits (55), Expect = 1.288e-16
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLH 688
            T   IA+GAA+GL YLH
Sbjct:  695 TRLSIALGAARGLAYLH 711          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5393_ARATH (Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.292e-16
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGV 602
            ELK+IT++F  + +IG+G +G VY G L +G   A+K L   K   E+F+ +V+ +S+  H N V LLG+C +G+ R + YEF  NGSL   +   K +
Sbjct:  492 ELKKITKSF--SYIIGKGGFGTVYGGNLSNGRKVAVKVLKDLKGSAEDFINEVASMSQTSHVNIVSLLGFCFEGSKRAIVYEFLENGSLDQFMSRNKSL 588          

HSP 2 Score: 26.5646 bits (57), Expect = 1.292e-16
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 2
Query:  632 MATASEIAVGAAKGLEYLHEKADPHIIIAILSP 730
            + T   IA+G A+GLEYLH      I+   + P
Sbjct:  592 VTTLYGIALGIARGLEYLHYGCKTRIVHFDIKP 624          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.688e-16
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 3
Query:  282 EVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEE--FLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGR 593
            ++   S+ EL+  T++F    ++G G +G+VY G L  G   A+K+L   + P  E  F  +V M+S   H N ++L G+C+  T R+L Y + +NGS+   L  R
Sbjct:  289 QLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRER 394          

HSP 2 Score: 33.4982 bits (75), Expect = 1.688e-16
Identity = 16/33 (48.48%), Postives = 21/33 (63.64%), Query Frame = 2
Query:  614 AWSCFVMATASEIAVGAAKGLEYLHEKADPHII 712
            AWS        +IA+G+A+GL YLH+  DP II
Sbjct:  402 AWSI-----RQQIALGSARGLSYLHDHCDPKII 429          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: CRK28_ARATH (Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana GN=CRK28 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.190e-16
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  294 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRK 596
            +  + LK  T+NF     +G G +G VY G+   G   A+K+L   S Q D EF  ++ ++++L+H N V+LLG+C++G  R+L YEF  N SL + +   K
Sbjct:  349 VDFETLKAATDNFSPENELGRGGFGSVYKGVFSGGQEIAVKRLSCTSGQGDSEFKNEILLLAKLQHRNLVRLLGFCIEGQERILVYEFIKNASLDNFIFDLK 450          

HSP 2 Score: 22.3274 bits (46), Expect = 2.190e-16
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  659 GAAKGLEYLHEKADPHII 712
            G A+GL YLHE +   II
Sbjct:  466 GVARGLLYLHEDSRYRII 483          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: ACCR3_ARATH (Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.836e-16
Identity = 45/144 (31.25%), Postives = 71/144 (49.31%), Query Frame = 3
Query:  192 MVKSSAGTDGAYHASEAAPKGAQAVKVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIK------KLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVK 605
            M +  +GT    HA +A                  S  EL   T NF     IG GS+G VY G L  G   AIK      K+   ++ +  F ++++ +SRL H++ V+L+GYC +   ++L Y++  NG+L+D LH +  V+
Sbjct:  465 MRRQRSGTSSMKHADKAEE---------------FSFSELASATGNFSLENKIGSGSFGVVYRGKLNDGREVAIKRGEVNAKMKKFQEKETAFDSEIAFLSRLHHKHLVRLVGYCEEREEKLLVYDYMKNGALYDHLHDKNNVE 593          

HSP 2 Score: 28.8758 bits (63), Expect = 2.836e-16
Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            +IA+ AA+G+EYLH  A P II
Sbjct:  607 KIALDAARGIEYLHNYAVPPII 628          
The following BLAST results are available for this feature:
BLAST of FC930101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
CRK41_ARATH7.677e-1737.61Cysteine-rich receptor-like protein kinase 41 OS=A... [more]
Y5129_ARATH7.691e-1735.71Probable LRR receptor-like serine/threonine-protei... [more]
PSKR1_ARATH9.893e-1740.59Phytosulfokine receptor 1 OS=Arabidopsis thaliana ... [more]
THE1_ARATH9.926e-1728.92Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
PSKR1_DAUCA1.285e-1639.13Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR... [more]
NORK_MEDTR1.288e-1636.59Nodulation receptor kinase OS=Medicago truncatula ... [more]
Y5393_ARATH1.292e-1640.40Probable receptor-like protein kinase At5g39030 OS... [more]
SERK2_ARATH1.688e-1633.96Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
CRK28_ARATH2.190e-1637.25Cysteine-rich receptor-like protein kinase 28 OS=A... [more]
ACCR3_ARATH2.836e-1631.25Putative serine/threonine-protein kinase-like prot... [more]

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Properties
Property NameValue
Genbank descriptionC34003G09EF PostHarvC1 Citrus clementina cDNA clone C34003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930101 ID=FC930101; Name=FC930101; organism=Citrus clementina; type=EST; length=740bp
GATCGTCGTCTTATCCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATT
CAAAATATCCAGCTCGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAG
AGGGGCATTATTGTGGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAG
AAGATGATATGCATAAAGCTGCTGACAATGGCAATGCATACATGGTTAAA
AGTTCAGCAGGAACTGATGGAGCCTATCATGCATCTGAAGCAGCACCTAA
GGGTGCTCAAGCTGTGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAG
TGGATGAATTGAAGGAAATTACTGAGAACTTTGGGACTAATGCTTTGATT
GGAGAAGGTTCATATGGAAGAGTATATTATGGGATTCTTAAAAGTGGACA
TGCTGCAGCAATAAAAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGT
TTTTAGCACAGGTTTCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTT
CAGCTGCTCGGGTATTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGA
GTTTGCATCTAATGGATCTCTTCATGATATTCTTCATGGGAGGAAAGGTG
TAAAAGGAGCTCAGCCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAA
TTGCTGTAGGGGCTGCGAAAGGGCTTGAATACTTGCATGAGAAGGCAGAT
CCTCATATTATCATCGCGATATTAAGTCCAGCATGTACTA
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