FC930101

Overview
NameFC930101
Unique NameFC930101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14052 contig Ccv1_Contig14052:33..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.805e-16
Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = 3
Query:  300 VDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDAS---KQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH 587
            + +L+  T NF    L+GEGS GRVY      G   A+KK+D++       E     V  +S+++H+N  +L+GYC +    +L YE+  NGSLH+ LH
Sbjct:  394 LSDLQSATANFSPGNLLGEGSIGRVYRAKYSDGRTLAVKKIDSTLFDSGKSEGITPIVMSLSKIRHQNIAELVGYCSEQGHNMLVYEYFRNGSLHEFLH 492          

HSP 2 Score: 28.4906 bits (62), Expect = 4.805e-16
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKADPHII 712
            T   IA+G A+ +EYLHE   P ++
Sbjct:  505 TRVRIALGTARAVEYLHEACSPSVM 529          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.818e-16
Identity = 35/106 (33.02%), Postives = 58/106 (54.72%), Query Frame = 3
Query:  282 EVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEE--FLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGR 593
            ++   S+ EL+  ++ F    ++G G +G+VY G L  G   A+K+L   + P  E  F  +V M+S   H N ++L G+C+  T R+L Y + +NGS+   L  R
Sbjct:  286 QLKRFSLRELQVASDGFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRER 391          

HSP 2 Score: 33.8834 bits (76), Expect = 4.818e-16
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKADPHII 712
            T   IA+G+A+GL YLH+  DP II
Sbjct:  402 TRKRIALGSARGLSYLHDHCDPKII 426          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.067e-16
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 3
Query:  270 VQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHG 590
            ++ + V   +++ ++  TE + T  LIGEG +G VY G L  G   A+K   A S Q   EF  +++++S ++HEN V LLGYC +   ++L Y F SNGSL D L+G
Sbjct:  577 IKSVSVKPFTLEYIELATEKYKT--LIGEGGFGSVYRGTLDDGQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYG 682          

HSP 2 Score: 25.7942 bits (55), Expect = 8.067e-16
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLH 688
            T   IA+GAA+GL YLH
Sbjct:  694 TRLSIALGAARGLAYLH 710          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5188_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana GN=At1g51880 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.077e-16
Identity = 41/114 (35.96%), Postives = 66/114 (57.89%), Query Frame = 3
Query:  294 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            I+  E+ ++T NF    ++G+G +G VY+G L+    A      +S Q  +EF A+V ++ R+ H N V L+GYC DG +  L YE+ +NG L + + G++G      G VL+W
Sbjct:  556 ITYPEVLKMTNNF--ERVLGKGGFGTVYHGNLEDTQVAVKMLSHSSAQGYKEFKAEVELLLRVHHRNLVGLVGYCDDGDNLALIYEYMANGDLKENMSGKRG------GNVLTW 661          

HSP 2 Score: 28.1054 bits (61), Expect = 8.077e-16
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            +IAV AA+GLEYLH    P ++
Sbjct:  666 QIAVEAAQGLEYLHNGCTPPMV 687          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: ANX1_ARATH (Receptor-like protein kinase ANXUR1 OS=Arabidopsis thaliana GN=ANX1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 8.082e-16
Identity = 39/114 (34.21%), Postives = 67/114 (58.77%), Query Frame = 3
Query:  297 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            S+ E+K  T+NF  + +IG G +G+VY G++      A+KK +  S+Q   EF  ++ ++SRL+H++ V L+GYC +G    L Y++ + G+L + L+  K        P L+W
Sbjct:  506 SLPEIKHGTQNFDDSNVIGVGGFGKVYKGVIDGTTKVAVKKSNPNSEQGLNEFETEIELLSRLRHKHLVSLIGYCDEGGEMCLVYDYMAFGTLREHLYNTK-------KPQLTW 612          

HSP 2 Score: 29.261 bits (64), Expect = 8.082e-16
Identity = 14/22 (63.64%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            EIA+GAA+GL YLH  A   II
Sbjct:  617 EIAIGAARGLHYLHTGAKYTII 638          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: ACCR4_ARATH (Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana GN=CCR4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.104e-16
Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 3
Query:  276 PIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASK-------------QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH 587
            P ++   S+DEL   T+ F     +G GS+G VY G+L  G   AIK+ + +                D  F+ ++  +SRL H+N V+LLG+  D   R+L YE+  NGSL D LH
Sbjct:  425 PGQLMEFSIDELALATDGFSVRFHLGIGSFGSVYQGVLSDGRHVAIKRAELTNPTLSGTTMRHRRADKDSAFVNELESMSRLNHKNLVRLLGFYEDTEERILVYEYMKNGSLADHLH 541          

HSP 2 Score: 26.5646 bits (57), Expect = 8.104e-16
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  650 IAVGAAKGLEYLHEKADPHII 712
            IA+ AA+G++YLHE   P +I
Sbjct:  556 IALDAARGIQYLHEFIVPPVI 576          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.049e-15
Identity = 36/96 (37.50%), Postives = 58/96 (60.42%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIK-KLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHG 590
            E+K  T NF    +IG GS+G VY G L  G   A+K + D ++   + F+ +V ++S+++H+N V   G+C +   ++L YE+ S GSL D L+G
Sbjct:  600 EIKSATRNF--KEVIGRGSFGAVYRGKLPDGKQVAVKVRFDRTQLGADSFINEVHLLSQIRHQNLVSFEGFCYEPKRQILVYEYLSGGSLADHLYG 693          

HSP 2 Score: 31.9574 bits (71), Expect = 1.049e-15
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            ++AV AAKGL+YLH  ++P II
Sbjct:  708 KVAVDAAKGLDYLHNGSEPRII 729          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: RKF3_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana GN=RKF3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.058e-15
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 3
Query:  297 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCV-----DGTSRVLAYEFASNGSLHDILHG 590
            S DE+K+ T NF  + +IG G YG V+ G L  G   A K+  + S   D  F  +V +++ ++H N + L GYC      +G  R++  +  SNGSLHD L G
Sbjct:  272 SFDEIKKATNNFSRHNIIGRGGYGNVFKGALPDGTQVAFKRFKNCSAGGDANFAHEVEVIASIRHVNLLALRGYCTATTPYEGHQRIIVCDLVSNGSLHDHLFG 375          

HSP 2 Score: 28.4906 bits (62), Expect = 1.058e-15
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 2
Query:  650 IAVGAAKGLEYLHEKADPHII 712
            IA+G A+GL YLH  A P II
Sbjct:  389 IALGMARGLAYLHYGAQPSII 409          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.067e-15
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  291 AISVDELKEITENFGTNALIGEGSYGRVYYGILK----------SGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            A + +ELK  T+NF  + L+GEG +G V+ G +           SG   A+K+L     Q  +E+L +V+ + +L H N V L+GYC +G +R+L YEF   GSL + L  R    GAQP   L+W
Sbjct:   73 AFTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSLENHLFRR----GAQP---LTW 191          

HSP 2 Score: 28.1054 bits (61), Expect = 1.067e-15
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  635 ATASEIAVGAAKGLEYLHE 691
            A   ++AVGAAKGL +LHE
Sbjct:  192 AIRMKVAVGAAKGLTFLHE 210          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: ACCR2_ARATH (Serine/threonine-protein kinase-like protein CCR2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.367e-15
Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  282 EVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASK---QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHG 590
            E     + ELK+ T  F     +G GS+G VY  +L  G   A+K+ +A+      +  F +++ ++ +++H N V LLGYC +   R+L YE+  +G+LHD LHG
Sbjct:  503 ETKIFRLSELKDATHGFKEFNELGRGSFGFVYKAVLSDGIHVAVKRANAATIIHSNNRGFESELEILCKIRHNNIVNLLGYCSEMGERLLVYEYMPHGTLHDHLHG 608          

HSP 2 Score: 29.261 bits (64), Expect = 1.367e-15
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            +I + AA+GL+YLH + DP II
Sbjct:  620 KIMLQAARGLDYLHNEVDPPII 641          
The following BLAST results are available for this feature:
BLAST of FC930101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
SRF5_ARATH4.805e-1637.37Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
SERK1_ARATH4.818e-1633.02Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
NORK_PEA8.067e-1639.81Nodulation receptor kinase OS=Pisum sativum GN=NOR... [more]
Y5188_ARATH8.077e-1635.96Probable LRR receptor-like serine/threonine-protei... [more]
ANX1_ARATH8.082e-1634.21Receptor-like protein kinase ANXUR1 OS=Arabidopsis... [more]
ACCR4_ARATH8.104e-1635.90Serine/threonine-protein kinase-like protein CCR4 ... [more]
Y5487_ARATH1.049e-1537.50Probable LRR receptor-like serine/threonine-protei... [more]
RKF3_ARATH1.058e-1537.50Probable LRR receptor-like serine/threonine-protei... [more]
APK2A_ARATH1.067e-1538.10Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
ACCR2_ARATH1.367e-1534.91Serine/threonine-protein kinase-like protein CCR2 ... [more]

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Properties
Property NameValue
Genbank descriptionC34003G09EF PostHarvC1 Citrus clementina cDNA clone C34003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930101 ID=FC930101; Name=FC930101; organism=Citrus clementina; type=EST; length=740bp
GATCGTCGTCTTATCCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATT
CAAAATATCCAGCTCGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAG
AGGGGCATTATTGTGGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAG
AAGATGATATGCATAAAGCTGCTGACAATGGCAATGCATACATGGTTAAA
AGTTCAGCAGGAACTGATGGAGCCTATCATGCATCTGAAGCAGCACCTAA
GGGTGCTCAAGCTGTGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAG
TGGATGAATTGAAGGAAATTACTGAGAACTTTGGGACTAATGCTTTGATT
GGAGAAGGTTCATATGGAAGAGTATATTATGGGATTCTTAAAAGTGGACA
TGCTGCAGCAATAAAAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGT
TTTTAGCACAGGTTTCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTT
CAGCTGCTCGGGTATTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGA
GTTTGCATCTAATGGATCTCTTCATGATATTCTTCATGGGAGGAAAGGTG
TAAAAGGAGCTCAGCCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAA
TTGCTGTAGGGGCTGCGAAAGGGCTTGAATACTTGCATGAGAAGGCAGAT
CCTCATATTATCATCGCGATATTAAGTCCAGCATGTACTA
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