FC930101

Overview
NameFC930101
Unique NameFC930101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14052 contig Ccv1_Contig14052:33..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.375e-15
Identity = 38/114 (33.33%), Postives = 58/114 (50.88%), Query Frame = 3
Query:  297 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            S  E++  T NF    ++G+G +G VY G L +G   A+K+L D     + +F  +V M+    H N ++L G+C+    R+L Y +  NGS+ D L    G K     P L W
Sbjct:  289 SFREIQTATSNFSPKNILGQGGFGMVYKGYLPNGTVVAVKRLKDPIYTGEVQFQTEVEMIGLAVHRNLLRLFGFCMTPEERMLVYPYMPNGSVADRLRDNYGEK-----PSLDW 397          

HSP 2 Score: 32.7278 bits (73), Expect = 1.375e-15
Identity = 14/21 (66.67%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  650 IAVGAAKGLEYLHEKADPHII 712
            IA+GAA+GL YLHE+ +P II
Sbjct:  403 IALGAARGLVYLHEQCNPKII 423          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15
Identity = 46/140 (32.86%), Postives = 76/140 (54.29%), Query Frame = 3
Query:  201 SSAGTDGAYHASEAAPKGAQAVKVQPIEVPAIS---------VDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHG 590
            S +G +G + ++     G        + +P IS         + +L+  T  F    ++GEG YG VY G L +G   A+KKL +   Q ++EF  +V  +  ++H+N V+LLGYC++G  R+L YE+ ++G+L   LHG
Sbjct:  131 SHSGEEGGFGSAGRQYGGGPVTASPLVGLPEISHLGWGHWFTLRDLELATNRFAPVNVLGEGGYGVVYRGKLVNGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNSGNLEQWLHG 270          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5900_ARATH (Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.772e-15
Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 3
Query:  246 PKGAQAVKVQPIE-VPA-----ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHA-AAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            P G  +   +P + +PA      S+ E+K  T +F    +IG G +G VY G +  G    A+K+L+  S Q  +EF  ++ M+S+L+H + V L+GYC +    VL YE+  +G+L D L  R         P LSW
Sbjct:  484 PHGTDSTNTKPAKSLPADLCRRFSIFEIKSATNDFEDKLIIGVGGFGSVYKGQIDGGATLVAVKRLEITSNQGAKEFETELEMLSKLRHVHLVSLIGYCDEDNEMVLVYEYMPHGTLKDHLFRRDKTS----DPPLSW 617          

HSP 2 Score: 28.4906 bits (62), Expect = 1.772e-15
Identity = 13/22 (59.09%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            EI +GAA+GL+YLH  A   II
Sbjct:  622 EICIGAARGLQYLHTGAKYTII 643          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.774e-15
Identity = 44/139 (31.65%), Postives = 73/139 (52.52%), Query Frame = 3
Query:  177 NGNAYMVKSSAGTDGAYHASEAAPKGAQAVKVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHG 590
            N   ++  SS GT  + + +  A   + +       +P ++V   KE T +F  N  IG G +G+VY G L  G   A+K+ +  S+Q   EF  ++ M+S+ +H + V L+GYC +    +L YE+  NG+L   L+G
Sbjct:  438 NSKTWIPLSSNGTTSSSNGTTLASIASNS----SYRIPLVAV---KEATNSFDENRAIGVGGFGKVYKGELHDGTKVAVKRANPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILVYEYMENGTLKSHLYG 569          

HSP 2 Score: 25.409 bits (54), Expect = 1.774e-15
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLH 688
            EI +G+A+GL YLH
Sbjct:  582 EICIGSARGLHYLH 595          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.785e-15
Identity = 34/112 (30.36%), Postives = 55/112 (49.11%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA--SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            EL   T+ F + +++G G +G VY G    G   A+K+L        + +F  ++ M+S   H N ++L+GYC   + R+L Y + SNGS+   L  +         P L W
Sbjct:  291 ELHVATDGFSSKSILGAGGFGNVYRGKFGDGTVVAVKRLKDVNGTSGNSQFRTELEMISLAVHRNLLRLIGYCASSSERLLVYPYMSNGSVASRLKAK---------PALDW 393          

HSP 2 Score: 36.965 bits (84), Expect = 1.785e-15
Identity = 16/25 (64.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKADPHII 712
            T  +IA+GAA+GL YLHE+ DP II
Sbjct:  395 TRKKIAIGAARGLFYLHEQCDPKII 419          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.786e-15
Identity = 38/120 (31.67%), Postives = 62/120 (51.67%), Query Frame = 3
Query:  282 EVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEE--FLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            ++   S+ EL+  ++NF    ++G G +G+VY G L  G   A+K+L   +    E  F  +V M+S   H N ++L G+C+  T R+L Y + +NGS+   L  R      +  P L W
Sbjct:  273 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRER-----PESQPPLDW 387          

HSP 2 Score: 31.9574 bits (71), Expect = 1.786e-15
Identity = 13/21 (61.90%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  650 IAVGAAKGLEYLHEKADPHII 712
            IA+G+A+GL YLH+  DP II
Sbjct:  393 IALGSARGLAYLHDHCDPKII 413          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.321e-15
Identity = 38/120 (31.67%), Postives = 65/120 (54.17%), Query Frame = 3
Query:  282 EVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL--DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            ++   ++ EL   T+NF    ++G G +G+VY G L  G+  A+K+L  + +K  + +F  +V M+S   H N ++L G+C+  T R+L Y + +NGS+   L  R      +  P L W
Sbjct:  278 QLKRFTLRELLVATDNFSNKNVLGRGGFGKVYKGRLADGNLVAVKRLKEERTKGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRER-----PEGNPALDW 392          

HSP 2 Score: 28.8758 bits (63), Expect = 2.321e-15
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  650 IAVGAAKGLEYLHEKADPHII 712
            IA+G+A+GL YLH+  D  II
Sbjct:  398 IALGSARGLAYLHDHCDQKII 418          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y2242_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.779e-15
Identity = 53/164 (32.32%), Postives = 76/164 (46.34%), Query Frame = 3
Query:  123 IMSCFGCCEEDDMHKAADNGNAYMVKSSAGTDGAYHASE------AAPKGAQAVKVQPIEVPAISV--DELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH 587
            I   FGC  +    +A D      VK      G +          A  K A AV V   E P +++   +L   T NF  + L+ +G +G VY G L  G   A+K L   S   D+E   ++  + R+KH N V L GYC+ G  R+  YE+  NG+L ++LH
Sbjct:  473 IFVAFGCRRKTKSGEAKD----LSVKEEQSISGPFSFQTDSTTWVADVKQANAVPVVIFEKPLLNITFSDLLSATSNFDRDTLLADGKFGPVYRGFLPGGIHVAVKVLVHGSTLSDQEAARELEFLGRIKHPNLVPLTGYCIAGDQRIAIYEYMENGNLQNLLH 632          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y1518_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51860 OS=Arabidopsis thaliana GN=At1g51860 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.991e-15
Identity = 40/114 (35.09%), Postives = 65/114 (57.02%), Query Frame = 3
Query:  294 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            I+  E+ ++T NF    ++G+G +G VY+G L     A      +S Q  +EF A+V ++ R+ H + V L+GYC DG +  L YE+ +NG L + + G++G      G VL+W
Sbjct:  574 ITYPEVLKMTNNF--ERVLGKGGFGTVYHGNLDGAEVAVKMLSHSSAQGYKEFKAEVELLLRVHHRHLVGLVGYCDDGDNLALIYEYMANGDLRENMSGKRG------GNVLTW 679          

HSP 2 Score: 27.7202 bits (60), Expect = 2.991e-15
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            +IAV AA+GLEYLH    P ++
Sbjct:  684 QIAVEAAQGLEYLHNGCRPPMV 705          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5389_ARATH (Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.992e-15
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 3
Query:  297 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHA-AAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            S+ E+K  T +F    +IG G +G VY G +  G    A+K+L+  S Q  +EF  ++ M+S+L+H + V L+GYC D    VL YE+  +G+L D L  R         P LSW
Sbjct:  514 SIYEIKSATNDFEEKLIIGVGGFGSVYKGRIDGGATLVAVKRLEITSNQGAKEFDTELEMLSKLRHVHLVSLIGYCDDDNEMVLVYEYMPHGTLKDHLFRRDKAS----DPPLSW 624          

HSP 2 Score: 28.4906 bits (62), Expect = 2.992e-15
Identity = 13/22 (59.09%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            EI +GAA+GL+YLH  A   II
Sbjct:  629 EICIGAARGLQYLHTGAKYTII 650          
The following BLAST results are available for this feature:
BLAST of FC930101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
Y5457_ARATH1.375e-1533.33Probable LRR receptor-like serine/threonine-protei... [more]
Y2296_ARATH1.629e-1532.86Probable receptor-like protein kinase At2g42960 OS... [more]
Y5900_ARATH1.772e-1534.06Putative receptor-like protein kinase At5g39000 OS... [more]
Y5597_ARATH1.774e-1531.65Probable receptor-like protein kinase At5g59700 OS... [more]
Y2239_ARATH1.785e-1530.36Probable LRR receptor-like serine/threonine-protei... [more]
BAK1_ARATH1.786e-1531.67BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
SERK4_ARATH2.321e-1531.67Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
Y2242_ARATH2.779e-1532.32Probable LRR receptor-like serine/threonine-protei... [more]
Y1518_ARATH2.991e-1535.09Probable LRR receptor-like serine/threonine-protei... [more]
Y5389_ARATH2.992e-1537.39Probable receptor-like protein kinase At5g38990 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34003G09EF PostHarvC1 Citrus clementina cDNA clone C34003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930101 ID=FC930101; Name=FC930101; organism=Citrus clementina; type=EST; length=740bp
GATCGTCGTCTTATCCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATT
CAAAATATCCAGCTCGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAG
AGGGGCATTATTGTGGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAG
AAGATGATATGCATAAAGCTGCTGACAATGGCAATGCATACATGGTTAAA
AGTTCAGCAGGAACTGATGGAGCCTATCATGCATCTGAAGCAGCACCTAA
GGGTGCTCAAGCTGTGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAG
TGGATGAATTGAAGGAAATTACTGAGAACTTTGGGACTAATGCTTTGATT
GGAGAAGGTTCATATGGAAGAGTATATTATGGGATTCTTAAAAGTGGACA
TGCTGCAGCAATAAAAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGT
TTTTAGCACAGGTTTCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTT
CAGCTGCTCGGGTATTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGA
GTTTGCATCTAATGGATCTCTTCATGATATTCTTCATGGGAGGAAAGGTG
TAAAAGGAGCTCAGCCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAA
TTGCTGTAGGGGCTGCGAAAGGGCTTGAATACTTGCATGAGAAGGCAGAT
CCTCATATTATCATCGCGATATTAAGTCCAGCATGTACTA
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