FC930101

Overview
NameFC930101
Unique NameFC930101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14052 contig Ccv1_Contig14052:33..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: ACCR1_ARATH (Serine/threonine-protein kinase-like protein CCR1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.001e-15
Identity = 36/99 (36.36%), Postives = 55/99 (55.56%), Query Frame = 3
Query:  300 VDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASK---QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH 587
            + ELK+ T  F     +G GSYG VY  +L  G   A+K+ +A+        EF  ++ ++  ++H N V LLGY  +   R+L YE+  +G+LHD LH
Sbjct:  510 LSELKDATNGFKEFNELGRGSYGFVYKAVLADGRQVAVKRANAATIIHTNTREFETELEILCNIRHCNIVNLLGYSTEMGERLLVYEYMPHGTLHDHLH 608          

HSP 2 Score: 32.7278 bits (73), Expect = 3.001e-15
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            +IA+  AKGLEYLH +A+P II
Sbjct:  621 KIAMQTAKGLEYLHNEAEPRII 642          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: CRK29_ARATH (Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana GN=CRK29 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.010e-15
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  294 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDIL 584
            +  + LK  T+NF +   +G G +G VY G+   G   A+K+L   S Q D EF  ++ ++++L+H N V+L+G+C+ G  R+L YEF  N SL   +
Sbjct:  345 VHFETLKTATDNFSSENELGRGGFGSVYKGVFPQGQEIAVKRLSGNSGQGDNEFKNEILLLAKLQHRNLVRLIGFCIQGEERLLVYEFIKNASLDQFI 442          

HSP 2 Score: 21.557 bits (44), Expect = 3.010e-15
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  659 GAAKGLEYLHEKADPHII 712
            G A+GL YLHE +   II
Sbjct:  462 GIARGLLYLHEDSRFRII 479          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.051e-15
Identity = 55/162 (33.95%), Postives = 85/162 (52.47%), Query Frame = 3
Query:  198 KSSAGTDGAYHASEAAPKGAQAVKVQ-----PIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGIL----------KSGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            KSS+G D  + +S  +   A A K +        V + S +ELK  T NF +++++GEG +G V+ G L           SG   A+K+L+    Q   E+L +++ + +L H N V+L+GYC++   R+L YEF   GSL + L    G K  +P   LSW
Sbjct:   12 KSSSGLDDLHLSSCKSSSSATAHKTEGEILSSTTVKSFSFNELKLATRNFRSDSVVGEGGFGCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEQRLLVYEFMHKGSLENHLFA-NGNKDFKP---LSW 169          

HSP 2 Score: 22.7126 bits (47), Expect = 3.051e-15
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHIII 715
            ++A+ AAKGL +LH  +DP  +I
Sbjct:  174 KVALDAAKGLAFLH--SDPVKVI 194          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.886e-15
Identity = 39/111 (35.14%), Postives = 67/111 (60.36%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            E+  +T NF    ++G+G +G VY+G + +    A+K L  +S Q  +EF A+V ++ R+ H+N V L+GYC +G +  L YE+ +NG L + + G++G      G +L+W
Sbjct:  586 EVVTMTNNF--ERVLGKGGFGMVYHGTVNNTEQVAVKMLSHSSSQGYKEFKAEVELLLRVHHKNLVGLVGYCDEGENLALIYEYMANGDLREHMSGKRG------GSILNW 688          

HSP 2 Score: 25.7942 bits (55), Expect = 3.886e-15
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKADPHII 712
            T  +I V +A+GLEYLH    P ++
Sbjct:  690 TRLKIVVESAQGLEYLHNGCKPPMV 714          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5181_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.889e-15
Identity = 39/111 (35.14%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            E+  +T NF    ++G+G +G VYYG +      A+K L  +S Q  ++F A+V ++ R+ H+N V L+GYC +G    L YE+ +NG L + + G++G      G +L+W
Sbjct:  571 EVLTMTNNF--QKILGKGGFGIVYYGSVNGTEQVAVKMLSHSSAQGYKQFKAEVELLLRVHHKNLVGLVGYCEEGDKLALIYEYMANGDLDEHMSGKRG------GSILNW 673          

HSP 2 Score: 26.9498 bits (58), Expect = 3.889e-15
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKADPHII 712
            T  +IA+ AA+GLEYLH    P ++
Sbjct:  675 TRLKIALEAAQGLEYLHNGCKPLMV 699          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y2232_ARATH (Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.893e-15
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:  294 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKK-LDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHG 590
            I   ++   T NF    LIG+G +G VY  IL  G  AAIK+    S Q   EF  ++ ++SR++H + V L GYC + +  +L YEF   G+L + L+G
Sbjct:  476 IPFTDILSATNNFDEQLLIGKGGFGYVYKAILPDGTKAAIKRGKTGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKGTLKEHLYG 575          

HSP 2 Score: 28.8758 bits (63), Expect = 3.893e-15
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHIII 715
            EI +GAA+GL+YLH       II
Sbjct:  588 EICIGAARGLDYLHSSGSEGAII 610          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5241_ARATH (Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.894e-15
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  294 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKK-LDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            IS  EL+  T NF  + +IG G +G V+ G LK     A+K+    S+Q   EFL++++++S+++H + V L+GYC + +  +L YE+   G L   L+G          P LSW
Sbjct:  477 ISFAELQSGTNNFDRSLVIGVGGFGMVFRGSLKDNTKVAVKRGSPGSRQGLPEFLSEITILSKIRHRHLVSLVGYCEEQSEMILVYEYMDKGPLKSHLYG-------STNPPLSW 584          

HSP 2 Score: 27.335 bits (59), Expect = 3.894e-15
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            E+ +GAA+GL YLH  +   II
Sbjct:  589 EVCIGAARGLHYLHTGSSQGII 610          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.025e-15
Identity = 35/110 (31.82%), Postives = 63/110 (57.27%), Query Frame = 3
Query:  297 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQ--------PDEEFLAQVSMVSRLKHENFVQLLGYCV--DGTSRVLAYEFASNGSLHDILHGRK 596
            +V ++ E T+ F  + ++G G+ G VY  ++ SG   A+KKL+++++         D  F A++  + +++H N V+L  +C      S +L YE+ S GSL ++LHG K
Sbjct:  808 TVKDILEATKGFHDSYIVGRGACGTVYKAVMPSGKTIAVKKLESNREGNNNNSNNTDNSFRAEILTLGKIRHRNIVRLYSFCYHQGSNSNLLLYEYMSRGSLGELLHGGK 917          

HSP 2 Score: 30.0314 bits (66), Expect = 5.025e-15
Identity = 14/25 (56.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKADPHII 712
            T   IA+GAA+GL YLH    P II
Sbjct:  925 TRFAIALGAAEGLAYLHHDCKPRII 949          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.035e-15
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 3
Query:  282 EVPA--ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRK 596
            E+P+   ++ ++K  T++F     IGEG +G V+ G+L  G   A+K+L + S+Q + EFL ++  +S L+H N V+L G+CV+    +LAYE+  N SL   L   K
Sbjct:  663 ELPSGTFTLRQIKFATDDFNPTNKIGEGGFGAVFKGVLADGRVVAVKQLSSKSRQGNREFLNEIGAISCLQHPNLVKLHGFCVERAQLLLAYEYMENNSLSSALFSPK 770          

HSP 2 Score: 24.2534 bits (51), Expect = 5.035e-15
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKA 697
            T  +I  G AKGL +LHE++
Sbjct:  780 TRFKICCGIAKGLAFLHEES 799          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: MEE39_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MEE39 OS=Arabidopsis thaliana GN=MEE39 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-15
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            E+ E+T+N      +GEG +G VY+G L      A+K L   S Q  +EF A+V ++ R+ H N V L+GYC +     L YE+ SNG LH  L G+ G      G VL+W
Sbjct:  560 EVMEMTKNL--QRPLGEGGFGVVYHGDLNGSEQVAVKLLSQTSAQGYKEFKAEVELLLRVHHINLVNLVGYCDEQDHFALIYEYMSNGDLHQHLSGKHG------GSVLNW 662          

HSP 2 Score: 26.9498 bits (58), Expect = 6.564e-15
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKADPHII 712
            T  +IA+ AA GLEYLH    P ++
Sbjct:  664 TRLQIAIEAALGLEYLHTGCKPAMV 688          
The following BLAST results are available for this feature:
BLAST of FC930101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ACCR1_ARATH3.001e-1536.36Serine/threonine-protein kinase-like protein CCR1 ... [more]
CRK29_ARATH3.010e-1536.73Cysteine-rich receptor-like protein kinase 29 OS=A... [more]
Y3545_ARATH3.051e-1533.95Probable receptor-like protein kinase At3g55450 OS... [more]
RLK6_ARATH3.886e-1535.14Receptor-like protein kinase At3g21340 OS=Arabidop... [more]
Y5181_ARATH3.889e-1535.14Probable LRR receptor-like serine/threonine-protei... [more]
Y2232_ARATH3.893e-1538.00Probable receptor-like protein kinase At2g23200 OS... [more]
Y5241_ARATH3.894e-1534.78Probable receptor-like protein kinase At5g24010 OS... [more]
Y2317_ARATH5.025e-1531.82Probable leucine-rich repeat receptor-like protein... [more]
RKF1_ARATH5.035e-1537.04Probable LRR receptor-like serine/threonine-protei... [more]
MEE39_ARATH6.564e-1539.64Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC34003G09EF PostHarvC1 Citrus clementina cDNA clone C34003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930101 ID=FC930101; Name=FC930101; organism=Citrus clementina; type=EST; length=740bp
GATCGTCGTCTTATCCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATT
CAAAATATCCAGCTCGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAG
AGGGGCATTATTGTGGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAG
AAGATGATATGCATAAAGCTGCTGACAATGGCAATGCATACATGGTTAAA
AGTTCAGCAGGAACTGATGGAGCCTATCATGCATCTGAAGCAGCACCTAA
GGGTGCTCAAGCTGTGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAG
TGGATGAATTGAAGGAAATTACTGAGAACTTTGGGACTAATGCTTTGATT
GGAGAAGGTTCATATGGAAGAGTATATTATGGGATTCTTAAAAGTGGACA
TGCTGCAGCAATAAAAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGT
TTTTAGCACAGGTTTCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTT
CAGCTGCTCGGGTATTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGA
GTTTGCATCTAATGGATCTCTTCATGATATTCTTCATGGGAGGAAAGGTG
TAAAAGGAGCTCAGCCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAA
TTGCTGTAGGGGCTGCGAAAGGGCTTGAATACTTGCATGAGAAGGCAGAT
CCTCATATTATCATCGCGATATTAAGTCCAGCATGTACTA
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