FC930101

Overview
NameFC930101
Unique NameFC930101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14052 contig Ccv1_Contig14052:33..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: CRK40_ARATH (Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana GN=CRK40 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.883e-14
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 3
Query:  321 TENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSL 572
            T++F +   +G+G +G VY G   +G   A+K+L   S Q D EF  +VS+++RL+H+N V+LLG+C +G   +L YEF  N SL
Sbjct:  345 TDDFSSENTLGQGGFGTVYKGTFPNGQEVAVKRLTKGSGQGDMEFKNEVSLLTRLQHKNLVKLLGFCNEGDEEILVYEFVPNSSL 429          

HSP 2 Score: 22.7126 bits (47), Expect = 1.883e-14
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 2
Query:  650 IAVGAAKGLEYLHEKADPHII 712
            I  G A+GL YLHE +   II
Sbjct:  450 IIEGIARGLLYLHEDSQLKII 470          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: FERON_ARATH (Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.429e-14
Identity = 40/146 (27.40%), Postives = 78/146 (53.42%), Query Frame = 3
Query:  156 DMHKAADNGNAYMVKSSAGTDGAYHASEAAPKGAQAVKVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHA-AAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH 587
            D   A+D  + ++  S  G   +  +++    G+ A  +        S  E+K  T+NF  + ++G G +G+VY G +  G    AIK+ +  S+Q   EF  ++ M+S+L+H + V L+GYC +    +L Y++ ++G++ + L+
Sbjct:  478 DYQPASDATSGWLPLSLYGNSHSAGSAKTNTTGSYASSLPSNLCRHFSFAEIKAATKNFDESRVLGVGGFGKVYRGEIDGGTTKVAIKRGNPMSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTMREHLY 623          

HSP 2 Score: 28.1054 bits (61), Expect = 2.429e-14
Identity = 13/22 (59.09%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            EI +GAA+GL YLH  A   II
Sbjct:  637 EICIGAARGLHYLHTGAKHTII 658          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y2393_ARATH (Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.434e-14
Identity = 36/110 (32.73%), Postives = 62/110 (56.36%), Query Frame = 3
Query:  309 LKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKK-LDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            +KE T++F  + +IG G +G+VY G+L+     A+K+    S+Q   EF  +V M+++ +H + V L+GYC + +  ++ YE+   G+L D L+           P LSW
Sbjct:  480 IKEATDDFDESLVIGVGGFGKVYKGVLRDKTEVAVKRGAPQSRQGLAEFKTEVEMLTQFRHRHLVSLIGYCDENSEMIIVYEYMEKGTLKDHLY------DLDDKPRLSW 583          

HSP 2 Score: 27.335 bits (59), Expect = 2.434e-14
Identity = 13/22 (59.09%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHII 712
            EI VGAA+GL YLH  +   II
Sbjct:  588 EICVGAARGLHYLHTGSTRAII 609          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5392_ARATH (Probable receptor-like protein kinase At5g39020 OS=Arabidopsis thaliana GN=At5g39020 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.434e-14
Identity = 36/99 (36.36%), Postives = 58/99 (58.59%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGV 602
            ELK+IT++F     +G+G +G VY G L +G   A+K L   K   ++F+ +V+ +S+  H N V LLG+C +G+ R +  EF  +GSL   +   K +
Sbjct:  490 ELKKITKSFSHT--VGKGGFGTVYRGNLSNGRTVAVKVLKDLKGNGDDFINEVTSMSQTSHVNIVSLLGFCYEGSKRAIISEFLEHGSLDQFISRNKSL 586          

HSP 2 Score: 26.5646 bits (57), Expect = 2.434e-14
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 2
Query:  632 MATASEIAVGAAKGLEYLHEKADPHIIIAILSP 730
            + T   IA+G A+GLEYLH      I+   + P
Sbjct:  590 VTTLYGIALGIARGLEYLHYGCKTRIVHFDIKP 622          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: WAKLJ_ARATH (Wall-associated receptor kinase-like 10 OS=Arabidopsis thaliana GN=WAKL10 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.437e-14
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPD-EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH 587
            EL++ TENF    ++GEG  G VY G+L  G   A+KK     +   EEF+ +V ++S++ H N V+LLG C++    +L YEF  NG+L + LH
Sbjct:  425 ELEKATENFSLTRILGEGGQGTVYKGMLVDGRIVAVKKSKVVDEDKLEEFINEVVILSQINHRNIVKLLGCCLETDVPILVYEFIPNGNLFEHLH 519          

HSP 2 Score: 20.7866 bits (42), Expect = 2.437e-14
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 1
Query:  700 SSYYHRDIKSS 732
            S  YHRDIKS+
Sbjct:  553 SPIYHRDIKST 563          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.479e-14
Identity = 45/142 (31.69%), Postives = 76/142 (53.52%), Query Frame = 3
Query:  201 SSAGTDGAYHASEAAPKGAQAVKVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILK----------SGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGR 593
            S  G+ G+  AS +     +   +Q   +   S+ ELK  T NF  ++++GEG +G V+ G +           +G   A+K+L+    Q   E+LA+++ + +L H N V+L+GYC++   R+L YEF + GSL + L  R
Sbjct:   25 SRDGSKGSSTASFSYMPRTEGEILQNANLKNFSLSELKSATRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKRLNQEGFQGHREWLAEINYLGQLDHPNLVKLIGYCLEEEHRLLVYEFMTRGSLENHLFRR 166          

HSP 2 Score: 25.409 bits (54), Expect = 2.479e-14
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKADPHII 712
            T   +A+GAA+GL +LH  A P +I
Sbjct:  177 TRVRMALGAARGLAFLH-NAQPQVI 200          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y1839_ARATH (Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14
Identity = 45/116 (38.79%), Postives = 69/116 (59.48%), Query Frame = 3
Query:  279 IEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSR--VLAYEFASNGSLHDILHGRKGVKGAQP 617
            + V   S +EL+E T NF  +  +G+G +G VYYG LK G + A+K+L D + +  E+F  +V +++ L+H N V L G C    SR  +L YE+ +NG+L D LHG +    + P
Sbjct:  327 VGVHIFSYEELEEATNNFDPSKELGDGGFGTVYYGKLKDGRSVAVKRLYDNNFKRAEQFRNEVEILTGLRHPNLVALFG-CSSKQSRDLLLVYEYVANGTLADHLHGPQANPSSLP 441          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: CRK35_ARATH (Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana GN=CRK35 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  297 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSL 572
            S   ++  T+ F  + +IG G +G VY G L SG   A+K+L   S Q  EEF  +  +VS+L+H+N V+LLG+C++G  ++L YEF  N SL
Sbjct:  334 SFKTIEAATDKFSDSNMIGRGGFGEVYRGKLSSGPEVAVKRLSKTSGQGAEEFKNEAVLVSKLQHKNLVRLLGFCLEGEEKILVYEFVPNKSL 426          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: Y5596_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.099e-14
Identity = 41/111 (36.94%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            E+ ++T NFG   ++GEG +G V +G +      A+K L  +S Q  +EF A+V ++ R+ H N V L+GYC +G    L YEF  NG L   L G+ G       P+++W
Sbjct:  574 EVTKMTNNFGR--VVGEGGFGVVCHGTVNGSEQVAVKLLSQSSTQGYKEFKAEVDLLLRVHHTNLVSLVGYCDEGDHLALIYEFVPNGDLRQHLSGKGG------KPIVNW 676          

HSP 2 Score: 24.2534 bits (51), Expect = 4.099e-14
Identity = 12/25 (48.00%), Postives = 14/25 (56.00%), Query Frame = 2
Query:  638 TASEIAVGAAKGLEYLHEKADPHII 712
            T   IA  AA GLEYLH    P ++
Sbjct:  678 TRLRIAAEAALGLEYLHIGCTPPMV 702          
BLAST of FC930101 vs. ExPASy Swiss-Prot
Match: SIRK_ARATH (Senescence-induced receptor-like serine/threonine-protein kinase OS=Arabidopsis thaliana GN=SIRK PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.100e-14
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  306 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSW 635
            E+  IT NF    +IG+G +G+VY+G++ +G   A+K L + S Q  +EF A+V ++ R+ H N   L+GYC +    VL YE+ +N +L D L G++         +LSW
Sbjct:  568 EVVNITNNF--ERVIGKGGFGKVYHGVI-NGEQVAVKVLSEESAQGYKEFRAEVDLLMRVHHTNLTSLVGYCNEINHMVLIYEYMANENLGDYLAGKRSF-------ILSW 668          

HSP 2 Score: 27.335 bits (59), Expect = 4.100e-14
Identity = 12/28 (42.86%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  647 EIAVGAAKGLEYLHEKADPHIIIAILSP 730
            +I++ AA+GLEYLH    P I+   + P
Sbjct:  673 KISLDAAQGLEYLHNGCKPPIVHRDVKP 700          
The following BLAST results are available for this feature:
BLAST of FC930101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
CRK40_ARATH1.883e-1442.35Cysteine-rich receptor-like protein kinase 40 OS=A... [more]
FERON_ARATH2.429e-1427.40Receptor-like protein kinase FERONIA OS=Arabidopsi... [more]
Y2393_ARATH2.434e-1432.73Probable receptor-like protein kinase At2g39360 OS... [more]
Y5392_ARATH2.434e-1436.36Probable receptor-like protein kinase At5g39020 OS... [more]
WAKLJ_ARATH2.437e-1441.05Wall-associated receptor kinase-like 10 OS=Arabido... [more]
NAK_ARATH2.479e-1431.69Probable serine/threonine-protein kinase NAK OS=Ar... [more]
Y1839_ARATH3.073e-1438.79Probable serine/threonine-protein kinase At1g18390... [more]
CRK35_ARATH3.073e-1441.94Putative cysteine-rich receptor-like protein kinas... [more]
Y5596_ARATH4.099e-1436.94Probable LRR receptor-like serine/threonine-protei... [more]
SIRK_ARATH4.100e-1436.94Senescence-induced receptor-like serine/threonine-... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34003G09EF PostHarvC1 Citrus clementina cDNA clone C34003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930101 ID=FC930101; Name=FC930101; organism=Citrus clementina; type=EST; length=740bp
GATCGTCGTCTTATCCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATT
CAAAATATCCAGCTCGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAG
AGGGGCATTATTGTGGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAG
AAGATGATATGCATAAAGCTGCTGACAATGGCAATGCATACATGGTTAAA
AGTTCAGCAGGAACTGATGGAGCCTATCATGCATCTGAAGCAGCACCTAA
GGGTGCTCAAGCTGTGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAG
TGGATGAATTGAAGGAAATTACTGAGAACTTTGGGACTAATGCTTTGATT
GGAGAAGGTTCATATGGAAGAGTATATTATGGGATTCTTAAAAGTGGACA
TGCTGCAGCAATAAAAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGT
TTTTAGCACAGGTTTCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTT
CAGCTGCTCGGGTATTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGA
GTTTGCATCTAATGGATCTCTTCATGATATTCTTCATGGGAGGAAAGGTG
TAAAAGGAGCTCAGCCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAA
TTGCTGTAGGGGCTGCGAAAGGGCTTGAATACTTGCATGAGAAGGCAGAT
CCTCATATTATCATCGCGATATTAAGTCCAGCATGTACTA
back to top