FC930107

Overview
NameFC930107
Unique NameFC930107
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930107_ssr35 microsatellite FC930107_ssr35:35..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10339 contig Ccv1_Contig10339:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_PSEHT (Enolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=eno PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.488e-52
Identity = 114/201 (56.72%), Postives = 140/201 (69.65%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIK 691
            I  V  R+I DSRGNPTVE DV  +DG   RAA PSGASTG  EALELRDG  S YLGKGV KAV  +N  I  ALAG++  EQ+ +D  M+  LDGT N     K+KLGANAILAVSLA  KA A  KK+ LY+HIA+L+G   +  +P+P  N+INGG HA N + +QEFMI P+GA  F+EA++MG E++H L  V+K
Sbjct:    4 IVKVIGREIMDSRGNPTVEADVHLADGSWGRAAAPSGASTGTREALELRDGDKSRYLGKGVLKAVGFINNEIATALAGQNALEQSTVDQVMLD-LDGTEN-----KEKLGANAILAVSLATAKAAAQSKKVELYEHIADLNGTPGVYSMPLPMMNIINGGEHADNSVDIQEFMIQPIGAKNFREALRMGAEIFHSLAKVLK 198          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_ALTMD (Enolase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=eno PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.488e-52
Identity = 113/200 (56.50%), Postives = 138/200 (69.00%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVI 688
            I+ +  R+I DSRGNPTVE DV    G + RAA PSGASTG  EALELRDG  S YLGKGV+KAV+ +N  I PAL GKD   Q  ID  M+  LDGT N     K+ LGANAILAVSLA+ KA A  K + LY+HIA+L+G      +PVP  N+INGG HA N + +QEFM+ PVGA  F+EA++MG E++H LK V+
Sbjct:    4 ISRIIGREILDSRGNPTVEADVYLESGAMGRAAAPSGASTGSREALELRDGDKSRYLGKGVTKAVAAINDTISPALLGKDALAQADIDGIMID-LDGTEN-----KETLGANAILAVSLAVAKAAAAEKGVALYEHIADLNGTSGQYSMPVPMMNIINGGEHADNNVDIQEFMVQPVGAKSFKEALRMGAEIFHALKKVL 197          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_THET8 (Enolase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=eno PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.555e-52
Identity = 109/200 (54.50%), Postives = 136/200 (68.00%), Query Frame = 2
Query:   92 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIK 691
            TI  V+AR++ DSRG PTVE +V    G   RA VPSGASTG +EALELRDGG  YLGKGV +AV NVN  I P L G D  +Q  +D  M+ +LDGT N     K  LGANA+LAVSLA+ +A A    +PLY++   L G + + LPVP  NVINGG HA N++  QEFM++P GA  F EA+++G EV+H LKAV+K
Sbjct:    3 TIVGVRAREVLDSRGFPTVEAEVELEGGARGRAMVPSGASTGTHEALELRDGGKRYLGKGVRRAVENVNERIAPELVGMDALDQEGVDRAML-ELDGTPN-----KANLGANAVLAVSLAVARAAAEALGLPLYRY---LGGVQGVTLPVPLMNVINGGKHADNRVDFQEFMLVPAGAGSFAEALRIGAEVFHTLKAVLK 193          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_THET2 (Enolase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=eno PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.555e-52
Identity = 109/200 (54.50%), Postives = 136/200 (68.00%), Query Frame = 2
Query:   92 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIK 691
            TI  V+AR++ DSRG PTVE +V    G   RA VPSGASTG +EALELRDGG  YLGKGV +AV NVN  I P L G D  +Q  +D  M+ +LDGT N     K  LGANA+LAVSLA+ +A A    +PLY++   L G + + LPVP  NVINGG HA N++  QEFM++P GA  F EA+++G EV+H LKAV+K
Sbjct:    3 TIVGVRAREVLDSRGFPTVEAEVELEGGARGRAMVPSGASTGTHEALELRDGGKRYLGKGVRRAVENVNERIAPELVGMDALDQEGVDRAML-ELDGTPN-----KANLGANAVLAVSLAVARAAAEALGLPLYRY---LGGVQGVTLPVPLMNVINGGKHADNRVDFQEFMLVPAGAGSFAEALRIGAEVFHTLKAVLK 193          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_THEON (Enolase OS=Thermococcus onnurineus (strain NA1) GN=eno PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.555e-52
Identity = 119/198 (60.10%), Postives = 137/198 (69.19%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVI 688
            ITAV AR+I DSRGNPTVEV+V T    + RAAVPSGASTG +EALELRDGG  Y GKGV +AV NVN II P L G D T Q  ID  M+ +LDGT N     K  LGANAIL VSLA+ KA A+   +PLY++I    G    V+PVP  NVINGG HAGN+L  QEFMI+PVGA  F+EA++   E YH LK VI
Sbjct:    7 ITAVVAREILDSRGNPTVEVEVYTPIS-MGRAAVPSGASTGTHEALELRDGGKRYHGKGVRRAVENVNKIIAPELIGMDVTWQRDIDTLML-ELDGTEN-----KSNLGANAILGVSLAVAKAAANALGLPLYQYI---GGTNAYVMPVPMSNVINGGVHAGNELDFQEFMIMPVGADSFREAIRWVSETYHVLKKVI 194          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_SHESW (Enolase OS=Shewanella sp. (strain W3-18-1) GN=eno PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.555e-52
Identity = 116/200 (58.00%), Postives = 135/200 (67.50%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVI 688
            I  V  R+I DSRGNPTVE +V    G V  AA PSGASTG  EALELRDG  S YLGKGV  AV+NVN +I  AL GKD T Q  +D  M+  LDGT N     K KLGANAILAVSLA  KA A  K IPLY HIAEL+G      +PVP  N++NGG HA N + +QEFM+ PVGA  F+EA++MG E++H LK V+
Sbjct:    4 IINVIGREIMDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRYLGKGVLTAVANVNGVIRTALLGKDATAQAELDQIMID-LDGTEN-----KDKLGANAILAVSLAAAKAAAASKGIPLYAHIAELNGTPGQYSMPVPMMNILNGGEHADNNVDIQEFMVQPVGAKTFREALRMGAEIFHTLKKVL 197          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_SHEPC (Enolase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=eno PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.555e-52
Identity = 116/200 (58.00%), Postives = 135/200 (67.50%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVI 688
            I  V  R+I DSRGNPTVE +V    G V  AA PSGASTG  EALELRDG  S YLGKGV  AV+NVN +I  AL GKD T Q  +D  M+  LDGT N     K KLGANAILAVSLA  KA A  K IPLY HIAEL+G      +PVP  N++NGG HA N + +QEFM+ PVGA  F+EA++MG E++H LK V+
Sbjct:    4 IINVIGREIMDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRYLGKGVLTAVANVNGVIRTALLGKDATAQAELDQIMID-LDGTEN-----KDKLGANAILAVSLAAAKAAAASKGIPLYAHIAELNGTPGQYSMPVPMMNILNGGEHADNNVDIQEFMVQPVGAKTFREALRMGAEIFHTLKKVL 197          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_SHEDO (Enolase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=eno PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.555e-52
Identity = 114/201 (56.72%), Postives = 137/201 (68.16%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIK 691
            I  V  R+I DSRGNPTVE +V  + G +  AA PSGASTG  EALELRDG  S YLGKGV  AV+N+N +I  AL GKD   Q  +D  M+  LDGT N     K KLGANAILAVSLA  KA A  K IPLY HIAEL+G   +  +PVP  N+INGG HA N + +QEFM+ PVGA  F+EA++MG E++H LK V++
Sbjct:    4 IINVIGREIMDSRGNPTVEAEVHLAGGFIGMAAAPSGASTGSREALELRDGDKSRYLGKGVLNAVANINGVIKAALMGKDAAAQAELDQIMID-LDGTEN-----KDKLGANAILAVSLAAAKAAAMSKGIPLYAHIAELNGTPGVYSMPVPMMNIINGGEHADNNVDIQEFMVQPVGAKNFREALRMGAEIFHSLKKVLQ 198          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_SHEAM (Enolase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=eno PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.555e-52
Identity = 116/201 (57.71%), Postives = 135/201 (67.16%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIK 691
            I  V  R+I DSRGNPTVE +V    G V  AA PSGASTG  EALELRDG  + YLGKGV KAV NVN  I  AL GKD T Q  +D  M+  LDGT N     K KLGANAILAVSLA  KA A  K IPLY HIAEL+G      +PVP  N++NGG HA N + +QEFM+ PV A  F+EA++MG E++H+LK V+K
Sbjct:    4 IIKVIGREIMDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKARYLGKGVLKAVDNVNGPIREALLGKDATAQAELDGIMIA-LDGTEN-----KDKLGANAILAVSLAAAKAAAAAKGIPLYAHIAELNGTPGQYSMPVPMMNILNGGEHADNNVDIQEFMVQPVSAKSFREALRMGAEIFHNLKKVLK 198          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_NOCSJ (Enolase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=eno PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.555e-52
Identity = 110/201 (54.73%), Postives = 141/201 (70.15%), Query Frame = 2
Query:   92 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIKR 694
            +I AV AR+I DSRGNPTVEV+V   D   ARAAVPSGASTG +EA+ELRDGG  YLGKGV+KAV  V   I PA+ G    +Q  +D  M+ +LDGT N     K KLGANAIL VSLA+ +A A   ++PLY+++    G    +LPVP  N++NGGSHA + + +QEFMI P+GA  F+EA++ G EVYH LK+V+K+
Sbjct:    3 SIEAVGAREILDSRGNPTVEVEVLLDDNSFARAAVPSGASTGAFEAVELRDGGDRYLGKGVAKAVEGVIQTIAPAIEGLAADDQRLVDQTML-ELDGTPN-----KGKLGANAILGVSLAVARAAADSAELPLYRYV---GGPNAHLLPVPMMNILNGGSHADSNVDVQEFMIAPIGAPTFREALRSGAEVYHALKSVLKK 194          
The following BLAST results are available for this feature:
BLAST of FC930107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ENO_PSEHT3.488e-5256.72Enolase OS=Pseudoalteromonas haloplanktis (strain ... [more]
ENO_ALTMD3.488e-5256.50Enolase OS=Alteromonas macleodii (strain DSM 17117... [more]
ENO_THET84.555e-5254.50Enolase OS=Thermus thermophilus (strain HB8 / ATCC... [more]
ENO_THET24.555e-5254.50Enolase OS=Thermus thermophilus (strain HB27 / ATC... [more]
ENO_THEON4.555e-5260.10Enolase OS=Thermococcus onnurineus (strain NA1) GN... [more]
ENO_SHESW4.555e-5258.00Enolase OS=Shewanella sp. (strain W3-18-1) GN=eno ... [more]
ENO_SHEPC4.555e-5258.00Enolase OS=Shewanella putrefaciens (strain CN-32 /... [more]
ENO_SHEDO4.555e-5256.72Enolase OS=Shewanella denitrificans (strain OS217 ... [more]
ENO_SHEAM4.555e-5257.71Enolase OS=Shewanella amazonensis (strain ATCC BAA... [more]
ENO_NOCSJ4.555e-5254.73Enolase OS=Nocardioides sp. (strain BAA-499 / JS61... [more]

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Properties
Property NameValue
Genbank descriptionC34003H03EF PostHarvC1 Citrus clementina cDNA clone C34003H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930107 ID=FC930107; Name=FC930107; organism=Citrus clementina; type=EST; length=715bp
GACTTAATCACAAGACTCTTCTCGCACTCACAGACTCTCTCTCTCGTTCT
AGATCTTTCTTCGGTTTTCCAGCTTTCAGAAAATGGCAATAACCATCACT
GCCGTCAAAGCCAGGCAGATCTTTGACAGCCGTGGAAATCCAACGGTGGA
GGTCGACGTGACAACATCAGATGGCCACGTGGCTAGAGCTGCTGTTCCAA
GCGGTGCATCCACCGGAATTTATGAGGCGCTTGAACTAAGAGACGGAGGC
TCTGATTACCTAGGCAAGGGTGTATCGAAGGCTGTTAGCAATGTCAACGC
CATCATTGGCCCTGCACTCGCTGGCAAGGACCCAACTGAGCAGACTGCTA
TTGACAACTATATGGTACAACAACTTGATGGAACTGTAAATGAGTGGGGT
TGGTGCAAACAGAAGCTTGGAGCAAACGCCATTTTGGCTGTCTCCCTAGC
TATCTGCAAGGCTGGTGCACATGTCAAGAAGATTCCTCTTTACAAGCATA
TTGCCGAACTCTCTGGTAACAAGAATTTGGTGTTGCCAGTGCCAGCATTC
AATGTCATTAATGGTGGATCACATGCTGGAAACAAACTTGCTATGCAGGA
GTTTATGATTCTTCCTGTAGGAGCTTCCTGTTTTCAAGAAGCCATGAAGA
TGGGTGTAGAAGTATATCACCATCTGAAGGCTGTGATTAAAAGAATACGG
NCAGGATGCTACAAT
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