FC930107

Overview
NameFC930107
Unique NameFC930107
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930107_ssr35 microsatellite FC930107_ssr35:35..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10339 contig Ccv1_Contig10339:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_STAA2 (Enolase OS=Staphylococcus aureus (strain JH1) GN=eno PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.714e-49
Identity = 107/203 (52.71%), Postives = 143/203 (70.44%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPT--EQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIKR 694
            IT V AR++ DSRGNPTVEV+V T  G   RA VPSGASTG +EA+ELRDG  S YLGKGV+KAV NVN II P +   + +  +Q +ID  M+  LDGT N     K KLGANAIL VS+A+ +A A +   PLYK++   +G +   LPVP  N++NGGSH+   +A QEFMILPVGA+ F+E+++ G E++H+LK+++ +
Sbjct:    4 ITDVYAREVLDSRGNPTVEVEVLTESGAFGRALVPSGASTGEHEAVELRDGDKSRYLGKGVTKAVENVNEIIAPEIIEGEFSVLDQVSIDKMMIA-LDGTPN-----KGKLGANAILGVSIAVARAAADLLGQPLYKYLGGFNGKQ---LPVPMMNIVNGGSHSDAPIAFQEFMILPVGATTFKESLRWGTEIFHNLKSILSK 197          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_STAA1 (Enolase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=eno PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.714e-49
Identity = 107/203 (52.71%), Postives = 143/203 (70.44%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPT--EQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIKR 694
            IT V AR++ DSRGNPTVEV+V T  G   RA VPSGASTG +EA+ELRDG  S YLGKGV+KAV NVN II P +   + +  +Q +ID  M+  LDGT N     K KLGANAIL VS+A+ +A A +   PLYK++   +G +   LPVP  N++NGGSH+   +A QEFMILPVGA+ F+E+++ G E++H+LK+++ +
Sbjct:    4 ITDVYAREVLDSRGNPTVEVEVLTESGAFGRALVPSGASTGEHEAVELRDGDKSRYLGKGVTKAVENVNEIIAPEIIEGEFSVLDQVSIDKMMIA-LDGTPN-----KGKLGANAILGVSIAVARAAADLLGQPLYKYLGGFNGKQ---LPVPMMNIVNGGSHSDAPIAFQEFMILPVGATTFKESLRWGTEIFHNLKSILSK 197          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_SALRD (Enolase OS=Salinibacter ruber (strain DSM 13855) GN=eno PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.714e-49
Identity = 108/201 (53.73%), Postives = 134/201 (66.67%), Query Frame = 2
Query:   92 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIK 691
            +I  V ARQI DSRG PTVEVDVTT +G + RAAVPSGASTG YEA+ELRDG +D Y G+GV +AV +VN  +  AL G    EQ AID+  ++ LDGT +     K  LGANAIL  SLA  KAGA    +PLY+H+   +      LPVP  N++NGG HA N + MQEFMI P GA  F EA++ G EV+H L +V++
Sbjct:    3 SIQRVTARQILDSRGTPTVEVDVTTGEGVLGRAAVPSGASTGAYEAVELRDGDADRYHGQGVLRAVGHVNDAVADALHGMSVLEQVAIDD-TLRALDGTED-----KSNLGANAILGASLAAAKAGAATLGVPLYRHLGRATAR---TLPVPLMNILNGGEHADNNVDMQEFMIAPAGADSFSEALRTGAEVFHTLASVLQ 194          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_RHOPB (Enolase OS=Rhodopseudomonas palustris (strain BisB18) GN=eno PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.714e-49
Identity = 109/196 (55.61%), Postives = 129/196 (65.82%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLK 679
            I  +  R+I DSRGNPTVEVDV   DG V RAAVPSGASTG +EA+ELRDG  + Y GKGV KAV  VN  I  AL G D  +Q  ID  M+  LDGT N     K +LGANAIL VSLA+ KA A    +PLY+++    G     LPVP  N+INGG HA N +  QEFMI+P+GA  F EA++MG EV+H LK
Sbjct:    4 IVDIIGREILDSRGNPTVEVDVVLEDGAVGRAAVPSGASTGAHEAVELRDGDKERYFGKGVLKAVEAVNGEIFDALGGMDAEQQVQIDEIMI-GLDGTPN-----KSRLGANAILGVSLAVAKAAAESFDMPLYRYV---GGTSARTLPVPMMNIINGGVHADNPIDFQEFMIMPIGAPSFSEALRMGAEVFHTLK 190          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_PROMP (Enolase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=eno PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.714e-49
Identity = 100/200 (50.00%), Postives = 139/200 (69.50%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIKR 694
            I  ++ARQ+ DSRGNPTVE +V    G + RA VPSGASTG +EA ELRDGG+ Y+GKGV  AV+ ++  I PAL G    +QT+IDN M+ ++DGT N     K  LGAN+ILAVSLA  +A ++   +PLY+++ +   N   +LPVP  NVINGG+HA N L  QEFM++P G   F EA+++G E++H LK+++++
Sbjct:    9 IDTIEARQVLDSRGNPTVEAEVFLECGAIGRAIVPSGASTGAHEAHELRDGGTKYMGKGVLNAVNKIHETISPALCGLSALDQTSIDNLMI-EIDGTPN-----KSSLGANSILAVSLANARAASNALDLPLYRYLGDPLSN---LLPVPLMNVINGGAHAPNGLDCQEFMLVPHGVKTFSEALRIGTEIFHSLKSLLEK 199          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_PECCP (Enolase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=eno PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.714e-49
Identity = 113/201 (56.22%), Postives = 133/201 (66.17%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIK 691
            I  V  R+I DSRGNPTVE +V    G V  AA PSGASTG  EALELRDG  S +LGKGV+KAV+ VN  I  A+ GKD  +Q  ID  M+  LDGT N     K K GANAILAVSLA  KA A  K +PLY HIAEL+G      +P+P  N+INGG HA N + +QEFMI PVGA   +EA++MG EV+H L  V+K
Sbjct:    4 IVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQAVVGKDAKDQANIDKIMID-LDGTDN-----KSKFGANAILAVSLAAAKAAAASKGLPLYAHIAELNGTPGKYSMPLPMMNIINGGEHADNNVDIQEFMIQPVGAKTLKEAIRMGSEVFHTLAKVLK 198          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_NATTJ (Enolase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=eno PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.714e-49
Identity = 107/199 (53.77%), Postives = 136/199 (68.34%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIK 691
            I  + AR+IFDSRGNPTVEV++ T  G    A VPSGASTG++EALELRDG   + GKGV KA S VN  IGP L G D T Q+AID  ++ +LDGT N     K+ LGANA+L VSLA  +A A    +PLY+    L G  +  LP+P  N++NGG HA N + +QEFMI+P+ A+ FQ AM+MGVE++H LK V+K
Sbjct:    4 IEEIYAREIFDSRGNPTVEVELYTESGAYGFARVPSGASTGVHEALELRDGEDRFGGKGVRKACSKVNEEIGPNLVGMDVTFQSAIDRALL-ELDGTDN-----KENLGANAMLGVSLAAARASAEFLGLPLYQ---VLGGVSSSTLPIPQMNILNGGEHADNNVDIQEFMIMPIRANNFQHAMRMGVEIFHALKNVLK 193          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_MYCPA (Enolase OS=Mycobacterium paratuberculosis GN=eno PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.714e-49
Identity = 105/200 (52.50%), Postives = 137/200 (68.50%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIKR 694
            I  V AR+I DSRGNPTVEV++  +DG  ARAAVPSGASTG +EA+ELRDGG  Y GKGV KAV  V   IGPA+ G +  +Q  +D  +V  LDGT +     K +LG NAIL VSLA+ KA A   ++PL+++   L G    +LPVP  N++NGG+HA   + +QEFM+ P+GA  F EA++ G EVYH LK+V+K+
Sbjct:    4 IEQVGAREILDSRGNPTVEVEIALTDGTFARAAVPSGASTGEHEAVELRDGGERYGGKGVQKAVQAVLDEIGPAVIGLNADDQRLVDQALV-DLDGTPD-----KSRLGGNAILGVSLAVAKAAADSAELPLFRY---LGGPNAHILPVPMMNILNGGAHADTAVDIQEFMVAPIGAPSFAEALRWGAEVYHSLKSVLKK 194          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_MYCA1 (Enolase OS=Mycobacterium avium (strain 104) GN=eno PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.714e-49
Identity = 105/200 (52.50%), Postives = 137/200 (68.50%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIKR 694
            I  V AR+I DSRGNPTVEV++  +DG  ARAAVPSGASTG +EA+ELRDGG  Y GKGV KAV  V   IGPA+ G +  +Q  +D  +V  LDGT +     K +LG NAIL VSLA+ KA A   ++PL+++   L G    +LPVP  N++NGG+HA   + +QEFM+ P+GA  F EA++ G EVYH LK+V+K+
Sbjct:    4 IEQVGAREILDSRGNPTVEVEIALTDGTFARAAVPSGASTGEHEAVELRDGGERYGGKGVQKAVQAVLDEIGPAVIGLNADDQRLVDQALV-DLDGTPD-----KSRLGGNAILGVSLAVAKAAADSAELPLFRY---LGGPNAHILPVPMMNILNGGAHADTAVDIQEFMVAPIGAPSFAEALRWGAEVYHSLKSVLKK 194          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_METKA (Enolase OS=Methanopyrus kandleri GN=eno PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.714e-49
Identity = 111/199 (55.78%), Postives = 130/199 (65.33%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIK 691
            I +VKAR++ DSRG PTVEV+V   DG V RA VPSGASTG YEALELRDG   Y GKGV +AV NV  II P + G D T Q  ID  M+ +LDGT N     K  LGANAIL VSLA+ +A A    IPLY++   L G     LPVP  NVINGG HAGN+L  QE MI+P G   F EA++ GVE YH L  +++
Sbjct:    4 IVSVKAREVLDSRGEPTVEVEVELEDGTVGRAMVPSGASTGTYEALELRDGDDRYGGKGVRRAVRNVEEIIAPEIEGLDATAQPDIDRTMI-ELDGTEN-----KSHLGANAILGVSLAVARAAAKSLGIPLYRY---LGGPTARRLPVPFMNVINGGEHAGNELDFQEHMIVPHGFESFSEALRAGVETYHVLGELLE 193          
The following BLAST results are available for this feature:
BLAST of FC930107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ENO_STAA24.714e-4952.71Enolase OS=Staphylococcus aureus (strain JH1) GN=e... [more]
ENO_STAA14.714e-4952.71Enolase OS=Staphylococcus aureus (strain Mu3 / ATC... [more]
ENO_SALRD4.714e-4953.73Enolase OS=Salinibacter ruber (strain DSM 13855) G... [more]
ENO_RHOPB4.714e-4955.61Enolase OS=Rhodopseudomonas palustris (strain BisB... [more]
ENO_PROMP4.714e-4950.00Enolase OS=Prochlorococcus marinus subsp. pastoris... [more]
ENO_PECCP4.714e-4956.22Enolase OS=Pectobacterium carotovorum subsp. carot... [more]
ENO_NATTJ4.714e-4953.77Enolase OS=Natranaerobius thermophilus (strain ATC... [more]
ENO_MYCPA4.714e-4952.50Enolase OS=Mycobacterium paratuberculosis GN=eno P... [more]
ENO_MYCA14.714e-4952.50Enolase OS=Mycobacterium avium (strain 104) GN=eno... [more]
ENO_METKA4.714e-4955.78Enolase OS=Methanopyrus kandleri GN=eno PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34003H03EF PostHarvC1 Citrus clementina cDNA clone C34003H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930107 ID=FC930107; Name=FC930107; organism=Citrus clementina; type=EST; length=715bp
GACTTAATCACAAGACTCTTCTCGCACTCACAGACTCTCTCTCTCGTTCT
AGATCTTTCTTCGGTTTTCCAGCTTTCAGAAAATGGCAATAACCATCACT
GCCGTCAAAGCCAGGCAGATCTTTGACAGCCGTGGAAATCCAACGGTGGA
GGTCGACGTGACAACATCAGATGGCCACGTGGCTAGAGCTGCTGTTCCAA
GCGGTGCATCCACCGGAATTTATGAGGCGCTTGAACTAAGAGACGGAGGC
TCTGATTACCTAGGCAAGGGTGTATCGAAGGCTGTTAGCAATGTCAACGC
CATCATTGGCCCTGCACTCGCTGGCAAGGACCCAACTGAGCAGACTGCTA
TTGACAACTATATGGTACAACAACTTGATGGAACTGTAAATGAGTGGGGT
TGGTGCAAACAGAAGCTTGGAGCAAACGCCATTTTGGCTGTCTCCCTAGC
TATCTGCAAGGCTGGTGCACATGTCAAGAAGATTCCTCTTTACAAGCATA
TTGCCGAACTCTCTGGTAACAAGAATTTGGTGTTGCCAGTGCCAGCATTC
AATGTCATTAATGGTGGATCACATGCTGGAAACAAACTTGCTATGCAGGA
GTTTATGATTCTTCCTGTAGGAGCTTCCTGTTTTCAAGAAGCCATGAAGA
TGGGTGTAGAAGTATATCACCATCTGAAGGCTGTGATTAAAAGAATACGG
NCAGGATGCTACAAT
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