FC930107

Overview
NameFC930107
Unique NameFC930107
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930107_ssr35 microsatellite FC930107_ssr35:35..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10339 contig Ccv1_Contig10339:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_PSEA7 (Enolase OS=Pseudomonas aeruginosa (strain PA7) GN=eno PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.807e-55
Identity = 116/201 (57.71%), Postives = 140/201 (69.65%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIK 691
            I  +K R++ DSRGNPTVE DV   +G V  A  PSGASTG  EALELRDG  S YLGKGV KAV+N+N  I   L GKD  +Q A+D+ M++ LDGT N     K KLGANAILAVSLA  KA A  K +PLY HIA+L+G      +PVP  N+INGG HA N + +QEFM+ PVGA  F EA++MG E++HHLKAV+K
Sbjct:    4 IVDIKGREVLDSRGNPTVEADVILDNGIVGSACAPSGASTGSREALELRDGDKSRYLGKGVLKAVANINGPIRDLLLGKDAADQKALDHAMIE-LDGTEN-----KAKLGANAILAVSLAAAKAAAQAKGVPLYAHIADLNGTPGQYSMPVPMMNIINGGEHADNNVDIQEFMVQPVGAKNFAEALRMGAEIFHHLKAVLK 198          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_CRYPA (Enolase OS=Cryphonectria parasitica GN=ENO1 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.281e-54
Identity = 117/204 (57.35%), Postives = 147/204 (72.06%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKN-LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIKR 694
            I+ + AR ++DSRGNPTVEVD+ T  G + RA VPSGASTG +EA ELRDG  S +LGKGV KAV NVN ++GP L  AG D  +QTA+D ++++ LDGT N     K KLGANAIL VSLA+ KAGA  K +PLY H+++L+G K   VLPVP  NV+NGGSHAG +LA QEFMI+P  A  F E ++ G E YH LK++ K+
Sbjct:    3 ISKIHARYVYDSRGNPTVEVDLVTETG-LHRAIVPSGASTGQHEACELRDGDKSKWLGKGVLKAVENVNTVLGPELIKAGLDVKDQTAVDEFLIK-LDGTAN-----KTKLGANAILGVSLAVAKAGAAEKGVPLYAHVSDLAGTKKPYVLPVPFQNVLNGGSHAGGRLAFQEFMIVPSAAPSFSEGLRWGAETYHQLKSLAKK 199          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_PSYWF (Enolase OS=Psychrobacter sp. (strain PRwf-1) GN=eno PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.185e-54
Identity = 113/203 (55.67%), Postives = 145/203 (71.43%), Query Frame = 2
Query:   86 AITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIK 691
            A+ I  ++AR+I DSRGNPT+E DV  +DG + RAA PSGASTG  EALELRDG  S YLGKGV+KAV+NVN+ I  AL   D T+Q  IDN +++ LDGT N     K  LGANA+LAVSLA  KA A  + +PL+++IA L G  +L +PVP  N++NGG HA N + +QEFMI P G S F EA++ GVE++H LK+V+K
Sbjct:    9 AVEIQDIRAREILDSRGNPTIEADVILADGSMGRAAAPSGASTGSREALELRDGDKSRYLGKGVTKAVANVNSQIRSALLESDATDQQGIDNILIE-LDGTAN-----KDHLGANAMLAVSLATAKAAAISQNLPLHQYIANLRGQTSLTMPVPMMNILNGGEHADNTVDIQEFMIEPTGFSSFSEALRAGVEIFHSLKSVLK 205          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_CARHZ (Enolase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=eno PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.853e-54
Identity = 114/200 (57.00%), Postives = 142/200 (71.00%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIK 691
            I  V AR+I DSRGNPTVEVDV   DG   RAAVPSGASTG +EA+ELRD     YLGKGV++AV NVN+IIGP + G D  +Q  ID Y+++ LDGT N     K KLGANAIL VS+A+ KA A+   +PLY++   L G    VLP P  N++NGG HA N + +QEFMI+P+GAS F EA++MG EV+H+LK V+K
Sbjct:    4 IREVIAREILDSRGNPTVEVDVILEDGTWGRAAVPSGASTGAFEAVELRDNDPQRYLGKGVTQAVENVNSIIGPEILGFDALDQVGIDEYLIE-LDGTPN-----KGKLGANAILGVSMAVAKAAANYLGLPLYRY---LGGTNARVLPAPMMNILNGGKHADNNVDIQEFMIMPLGASSFSEALRMGAEVFHNLKKVLK 194          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_ACIAD (Enolase OS=Acinetobacter sp. (strain ADP1) GN=eno PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.853e-54
Identity = 115/201 (57.21%), Postives = 142/201 (70.65%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIKR 694
            I  ++AR+I DSRGNPT+E DV  + G V RA  PSGASTG  EALELRDG  + YLGKGV  AV+NVN II  AL GK   EQ  IDN M++ LDGT N     K+KLGANA LAVSLA  +A A  KKIPL+++IA+L G   L +PVP  N+INGGSHA N + +QEFMI PVG + F EA++ G E++H LK+V+ +
Sbjct:    6 IVDIRAREILDSRGNPTIEADVILASGVVGRACAPSGASTGSREALELRDGDKARYLGKGVKTAVNNVNTIIRDALVGKSVFEQKDIDNTMIE-LDGTEN-----KEKLGANATLAVSLAAARAAADEKKIPLFQYIADLRGQTILTMPVPMMNIINGGSHADNNVDIQEFMIEPVGFTSFSEALRAGAEIFHSLKSVLNK 200          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_RHORB (Enolase OS=Rhodotorula rubra GN=ENO PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.727e-54
Identity = 120/207 (57.97%), Postives = 149/207 (71.98%), Query Frame = 2
Query:   89 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKN--LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIKR 694
            + I+ + +R ++DSRGNPTVEV++TT  G   R+ VPSGASTG++EALELRDG  S +LGKGV KAV+NVN  I PAL  A  D  +Q  ID ++++ LDGT N     K KLGANAIL VSLA  KAGA  K +PLYKHIA++S  K    VLPVP  NV+NGGSHAG  LA QEFMI+P GA  F E +++G EVYHHLK++ K+
Sbjct:    1 MAISKIHSRYVYDSRGNPTVEVELTTEKG-TFRSIVPSGASTGVHEALELRDGDKSKWLGKGVLKAVANVNDTIAPALIEANIDVADQAKIDEFLLK-LDGTPN-----KAKLGANAILGVSLAAAKAGAAQKDVPLYKHIADISKAKEGKFVLPVPFQNVLNGGSHAGGDLAFQEFMIVPSGAPSFSEGLRIGSEVYHHLKSLTKK 200          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_PSYCK (Enolase OS=Psychrobacter cryohalolentis (strain K5) GN=eno PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.727e-54
Identity = 114/200 (57.00%), Postives = 143/200 (71.50%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIK 691
            I  ++AR+I DSRGNPT+E DV  +DG + RAA PSGASTG  EALELRDG  S Y+GKGV KAV+NVN+ I  AL  KD T Q AID+ M+  LDGT N     K  LGANAILAVSLA+ KA A  + +PL+++IA+L    +L +PVP  N+INGG HA N + +QEFMI PVG S F EA++ G E++H LK+V+K
Sbjct:   12 IKDIRAREILDSRGNPTIEADVILADGTIGRAAAPSGASTGSREALELRDGDQSRYMGKGVKKAVANVNSQIRSALMDKDVTAQQAIDDAMIA-LDGTEN-----KDNLGANAILAVSLAVAKAAAKSQSLPLHQYIADLRNQTSLTMPVPMMNIINGGEHADNTVDIQEFMIEPVGFSSFSEALRAGTEIFHSLKSVLK 205          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO2_CANGA (Enolase 2 OS=Candida glabrata GN=ENO2 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.727e-54
Identity = 117/207 (56.52%), Postives = 150/207 (72.46%), Query Frame = 2
Query:   89 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKN--LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIKR 694
            + ++ V AR ++DSRGNPTVEV++TT  G V R+ VPSGASTGI+EALE+RDG  S +LGKGV  AV NVN +I PA   A  D  +Q A+D+ ++  LDGT N     K KLGANAIL VS+A  +A A  K +PLY+H+A+LS +K    VLPVP  NV+NGGSHAG  LA+QEFMI P GA  F+EAM++G EVYH+LK++ K+
Sbjct:    1 MAVSKVYARSVYDSRGNPTVEVELTTEKG-VFRSIVPSGASTGIHEALEMRDGDKSKWLGKGVENAVKNVNDVIAPAFVKANVDIKDQKAVDDLLLS-LDGTAN-----KSKLGANAILGVSMAAARAAAAEKNVPLYQHLADLSDSKTSPFVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKSFREAMRIGSEVYHNLKSLTKK 200          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_PSEPK (Enolase OS=Pseudomonas putida (strain KT2440) GN=eno PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.867e-54
Identity = 113/201 (56.22%), Postives = 139/201 (69.15%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIK 691
            I  +K R++ DSRGNPTVE DV   +G +  A  PSGASTG  EALELRDG  S YLGKGV KAV+N+N  I   L GKDP++Q A+D  M++ LDGT N     K KLGANAILAVSLA  KA A  + +PLY HIA L+G      +PVP  N+INGG HA N + +QEFM+ PVGA  F + ++MG E++HHLKAV+K
Sbjct:    4 IVDIKGREVLDSRGNPTVEADVLLDNGIIGSACAPSGASTGSREALELRDGDKSRYLGKGVLKAVANINGPIRDLLLGKDPSDQKALDRAMIE-LDGTEN-----KAKLGANAILAVSLAAAKAAAQDQDLPLYAHIANLNGTPGQYSMPVPMMNIINGGEHADNNVDIQEFMVQPVGAKTFSDGLRMGTEIFHHLKAVLK 198          
BLAST of FC930107 vs. ExPASy Swiss-Prot
Match: ENO_PSEPG (Enolase OS=Pseudomonas putida (strain GB-1) GN=eno PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.867e-54
Identity = 113/201 (56.22%), Postives = 139/201 (69.15%), Query Frame = 2
Query:   95 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNKNLV-LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAVIK 691
            I  +K R++ DSRGNPTVE DV   +G +  A  PSGASTG  EALELRDG  S YLGKGV KAV+N+N  I   L GKDP++Q A+D  M++ LDGT N     K KLGANAILAVSLA  KA A  + +PLY HIA L+G      +PVP  N+INGG HA N + +QEFM+ PVGA  F + ++MG E++HHLKAV+K
Sbjct:    4 IVDIKGREVLDSRGNPTVEADVLLDNGIIGSACAPSGASTGSREALELRDGDKSRYLGKGVLKAVANINGPIRELLLGKDPSDQKALDRAMIE-LDGTEN-----KAKLGANAILAVSLAAAKAAAQDQDLPLYAHIANLNGTPGQYSMPVPMMNIINGGEHADNNVDIQEFMVQPVGAKTFSDGLRMGTEIFHHLKAVLK 198          
The following BLAST results are available for this feature:
BLAST of FC930107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ENO_PSEA79.807e-5557.71Enolase OS=Pseudomonas aeruginosa (strain PA7) GN=... [more]
ENO_CRYPA1.281e-5457.35Enolase OS=Cryphonectria parasitica GN=ENO1 PE=3 S... [more]
ENO_PSYWF2.185e-5455.67Enolase OS=Psychrobacter sp. (strain PRwf-1) GN=en... [more]
ENO_CARHZ2.853e-5457.00Enolase OS=Carboxydothermus hydrogenoformans (stra... [more]
ENO_ACIAD2.853e-5457.21Enolase OS=Acinetobacter sp. (strain ADP1) GN=eno ... [more]
ENO_RHORB3.727e-5457.97Enolase OS=Rhodotorula rubra GN=ENO PE=1 SV=1[more]
ENO_PSYCK3.727e-5457.00Enolase OS=Psychrobacter cryohalolentis (strain K5... [more]
ENO2_CANGA3.727e-5456.52Enolase 2 OS=Candida glabrata GN=ENO2 PE=3 SV=1[more]
ENO_PSEPK4.867e-5456.22Enolase OS=Pseudomonas putida (strain KT2440) GN=e... [more]
ENO_PSEPG4.867e-5456.22Enolase OS=Pseudomonas putida (strain GB-1) GN=eno... [more]

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Properties
Property NameValue
Genbank descriptionC34003H03EF PostHarvC1 Citrus clementina cDNA clone C34003H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930107 ID=FC930107; Name=FC930107; organism=Citrus clementina; type=EST; length=715bp
GACTTAATCACAAGACTCTTCTCGCACTCACAGACTCTCTCTCTCGTTCT
AGATCTTTCTTCGGTTTTCCAGCTTTCAGAAAATGGCAATAACCATCACT
GCCGTCAAAGCCAGGCAGATCTTTGACAGCCGTGGAAATCCAACGGTGGA
GGTCGACGTGACAACATCAGATGGCCACGTGGCTAGAGCTGCTGTTCCAA
GCGGTGCATCCACCGGAATTTATGAGGCGCTTGAACTAAGAGACGGAGGC
TCTGATTACCTAGGCAAGGGTGTATCGAAGGCTGTTAGCAATGTCAACGC
CATCATTGGCCCTGCACTCGCTGGCAAGGACCCAACTGAGCAGACTGCTA
TTGACAACTATATGGTACAACAACTTGATGGAACTGTAAATGAGTGGGGT
TGGTGCAAACAGAAGCTTGGAGCAAACGCCATTTTGGCTGTCTCCCTAGC
TATCTGCAAGGCTGGTGCACATGTCAAGAAGATTCCTCTTTACAAGCATA
TTGCCGAACTCTCTGGTAACAAGAATTTGGTGTTGCCAGTGCCAGCATTC
AATGTCATTAATGGTGGATCACATGCTGGAAACAAACTTGCTATGCAGGA
GTTTATGATTCTTCCTGTAGGAGCTTCCTGTTTTCAAGAAGCCATGAAGA
TGGGTGTAGAAGTATATCACCATCTGAAGGCTGTGATTAAAAGAATACGG
NCAGGATGCTACAAT
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