FC930112

Overview
NameFC930112
Unique NameFC930112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.359e-16
Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  337 SFTLRQIKAATNHFDVANKIGEGGFGPVYKGLL----------ADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            +FT  ++K AT +F   + +GEGGFG V+KG +            G ++AVK+L  +  QG++E++ E+  +  L HP+LVKL G C+EG   LL+YE++   +L
Sbjct:   70 AFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSL 174          

HSP 2 Score: 22.3274 bits (46), Expect = 4.359e-16
Identity = 8/19 (42.11%), Postives = 11/19 (57.89%), Query Frame = 3
Query:  660 LDWPXRHNICIGIARGLAY 716
            L W  R  + IG A+GL +
Sbjct:  186 LTWAIRMKVAIGAAKGLTF 204          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.370e-16
Identity = 42/105 (40.00%), Postives = 67/105 (63.81%), Query Frame = 1
Query:  337 SFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLAD----------GTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            +F+L ++K+AT +F   + +GEGGFG V+KG + +          G +IAVK+L+ +  QG+RE++ EI  +  L HP+LVKL G C+E    LL+YE++   +L
Sbjct:   55 NFSLSELKSATRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKRLNQEGFQGHREWLAEINYLGQLDHPNLVKLIGYCLEEEHRLLVYEFMTRGSL 159          

HSP 2 Score: 23.8682 bits (50), Expect = 4.370e-16
Identity = 13/34 (38.24%), Postives = 16/34 (47.06%), Query Frame = 3
Query:  615 SLARALFGPEEHRLKLDWPXRHNICIGIARGLAY 716
            SL   LF        L W  R  + +G ARGLA+
Sbjct:  158 SLENHLFRRGTFYQPLSWNTRVRMALGAARGLAF 191          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.613e-16
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  337 SFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQL-SAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLEN 612
            SFT R++  AT+ F   + +G GGFG VY+G   DGT++AVK+L       GN +F  E+  IS   H +L++L G C   ++ LL+Y Y+ N
Sbjct:  286 SFTFRELHVATDGFSSKSILGAGGFGNVYRGKFGDGTVVAVKRLKDVNGTSGNSQFRTELEMISLAVHRNLLRLIGYCASSSERLLVYPYMSN 378          

HSP 2 Score: 27.335 bits (59), Expect = 5.613e-16
Identity = 12/19 (63.16%), Postives = 12/19 (63.16%), Query Frame = 3
Query:  660 LDWPXRHNICIGIARGLAY 716
            LDW  R  I IG ARGL Y
Sbjct:  391 LDWNTRKKIAIGAARGLFY 409          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: Y1839_ARATH (Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 40/97 (41.24%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCI-EGNQLLLIYEYLENTALLE 627
            F+  +++ ATN+FD + ++G+GGFG VY G L DG  +AVK+L   + +   +F NE+  ++ L+HP+LV L+GC   +   LLL+YEY+ N  L +
Sbjct:  332 FSYEELEEATNNFDPSKELGDGGFGTVYYGKLKDGRSVAVKRLYDNNFKRAEQFRNEVEILTGLRHPNLVALFGCSSKQSRDLLLVYEYVANGTLAD 428          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: WAKLP_ARATH (Wall-associated receptor kinase-like 15 OS=Arabidopsis thaliana GN=WAKL15 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.973e-16
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTALLE 627
            FT ++I  AT++F  +N +G GGFG V+KG L DGT +AVK+    +++   + VNE+  +  + H +LVKL GCCIE    +L+YE++ N  L E
Sbjct:  342 FTGKEIVKATDNFAKSNLLGFGGFGEVFKGNLDDGTTVAVKRAKLGNEKSIYQIVNEVQILCQVSHKNLVKLLGCCIELEMPVLVYEFVPNGTLFE 437          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: WAKLN_ARATH (Wall-associated receptor kinase-like 18 OS=Arabidopsis thaliana GN=WAKL18 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.973e-16
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  328 QTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTALLE 627
            +T  F  R+++ AT +F     +G GG G VYKG+L DG  +AVK+     +   +EF+NE+  +S + H H+VKL GCC+E    +L+YE++ N  L +
Sbjct:  437 KTRVFNSRELEKATENFSENRVLGHGGQGTVYKGMLVDGRTVAVKKSKVIDEDKLQEFINEVVILSQINHRHVVKLLGCCLETEVPMLVYEFIINGNLFK 536          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: WAKLM_ARATH (Wall-associated receptor kinase-like 17 OS=Arabidopsis thaliana GN=WAKL17 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.973e-16
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTALLE 627
            FT ++++ AT +F     +G GG G VYKG+L DG  +AVK+     +   +EF+NE+  +S + H H+VKL GCC+E    +L+YE++ N  L +
Sbjct:  432 FTSKELEKATENFSENRVLGHGGQGTVYKGMLVDGRTVAVKKSKVIDEDKLQEFINEVVILSQINHRHVVKLLGCCLETEVPILVYEFIINGNLFK 527          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: WAKLF_ARATH (Wall-associated receptor kinase-like 6 OS=Arabidopsis thaliana GN=WAKL6 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.973e-16
Identity = 37/96 (38.54%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTALLE 627
            F+ +++K AT++F +   +G+GG G VYKG+LA+G ++AVK+     +    EF+NE+  +S + H ++VKL GCC+     +L+YEY+ N  L +
Sbjct:  420 FSSKELKKATDNFSMNRVLGQGGQGTVYKGMLAEGRIVAVKRSKVVGEGKMEEFINEVVLLSQINHRNIVKLLGCCLGTEVPVLVYEYIPNGDLFK 515          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 1
Query:  337 SFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTL----------IAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            SF+  ++K AT +F   + +GEGGFG V++G L + TL          IAVK+L+    QG+RE++ EI  +  L HP+LVKL G C+E  Q LL+YE++   +L
Sbjct:   48 SFSFNELKLATRNFRSDSVVGEGGFGCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEQRLLVYEFMHKGSL 152          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: WAKLD_ARATH (Wall-associated receptor kinase-like 4 OS=Arabidopsis thaliana GN=WAKL4 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 35/91 (38.46%), Postives = 61/91 (67.03%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLEN 612
            F+  +++ AT++F+    +G+GG G VYKG+L DG ++AVK+  A  +    EF+NE+  ++ + H ++VKL GCC+E    +L+YE++ N
Sbjct:  412 FSSNELEKATDNFNTNRVLGQGGQGTVYKGMLVDGRIVAVKRSKAMDEDKVEEFINEVVVLAQINHRNIVKLLGCCLETEVPVLVYEFVPN 502          
The following BLAST results are available for this feature:
BLAST of FC930112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
APK2B_ARATH4.359e-1638.10Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
NAK_ARATH4.370e-1640.00Probable serine/threonine-protein kinase NAK OS=Ar... [more]
Y2239_ARATH5.613e-1640.86Probable LRR receptor-like serine/threonine-protei... [more]
Y1839_ARATH6.871e-1641.24Probable serine/threonine-protein kinase At1g18390... [more]
WAKLP_ARATH8.973e-1642.71Wall-associated receptor kinase-like 15 OS=Arabido... [more]
WAKLN_ARATH8.973e-1639.00Wall-associated receptor kinase-like 18 OS=Arabido... [more]
WAKLM_ARATH8.973e-1639.58Wall-associated receptor kinase-like 17 OS=Arabido... [more]
WAKLF_ARATH8.973e-1638.54Wall-associated receptor kinase-like 6 OS=Arabidop... [more]
Y3545_ARATH1.172e-1541.90Probable receptor-like protein kinase At3g55450 OS... [more]
WAKLD_ARATH1.172e-1538.46Wall-associated receptor kinase-like 4 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC34003H08EF PostHarvC1 Citrus clementina cDNA clone C34003H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930112 ID=FC930112; Name=FC930112; organism=Citrus clementina; type=EST; length=716bp
ATTGAGGAGGAAGCTGGTGGAGTTGGTAAACCAATTGTGAAACCATTTTC
TGCTGTCGTGACCAATGGGACCATGGATATCCGTCTCTATTGGGCAGGGA
AAGGGACAACTGAAATTCCTGAGAGAGGAGTTTATGGTCCTCTCATATCG
GCTATTTCTCTTCATAACCCTGATTTCGAAGGAAGCAGTGGCATATCAGT
AGGCACCGTGCTCGGAATTGTAGCGGCTGCAGCAGTTGTGATAATCCTAG
TTGTGGGTATCCTTTGGTGGAAGGGCTGTTTTAGACCAAAATATACATCG
GAACGAGAGCTGAGGGGTCTAGACTTGCAAACTGGTTCTTTTACCTTGAG
GCAAATTAAAGCTGCCACAAACCACTTTGATGTTGCTAACAAGATTGGTG
AAGGTGGTTTTGGCCCTGTTTACAAGGGCCTTTTGGCAGATGGCACTCTA
ATTGCTGTCAAGCAGCTTTCTGCCAAATCAAAGCAAGGAAATAGAGAGTT
CGTTAATGAGATTGGCACGATTTCTGCTTTGCAACACCCTCATCTTGTAA
AGCTTTATGGATGTTGCATTGAAGGAAATCAATTGTTATTGATATACGAG
TACTTGGAAAACACAGCCTTGCTAGAGCTTTGTTTGGTCCTGAAGAGCAT
CGGTTGAAGTTGGATTGGCCAANCAGACATAATATTTGCATCGGTATAGC
TAGAGGTTTAGCTTAT
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