FC930112

Overview
NameFC930112
Unique NameFC930112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: CRK23_ARATH (Putative cysteine-rich receptor-like protein kinase 23 OS=Arabidopsis thaliana GN=CRK23 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.039e-22
Identity = 47/94 (50.00%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            F  + I AATN+F   NK+G+GGFG VYKG    G  +AVK+LS  S QG REF NE+  ++ LQH +LV+L G C+EG + +L+YE++ N +L
Sbjct:  496 FDFKAIVAATNNFLPINKLGQGGFGEVYKGTFPSGVQVAVKRLSKTSGQGEREFENEVVVVAKLQHRNLVRLLGYCLEGEEKILVYEFVHNKSL 589          

HSP 2 Score: 27.335 bits (59), Expect = 1.039e-22
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:  657 KLDWPXRHNICIGIARGLAY 716
            +LDW  R+ I  GIARG+ Y
Sbjct:  601 QLDWTRRYKIIGGIARGILY 620          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: CRK5_ARATH (Cysteine-rich receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=CRK5 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.043e-22
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            F  + I+AAT+ F + NK+G+GGFG VYKG L +G  +AVK+LS  S QG +EF NE+  ++ LQH +LVKL G C+E  + +L+YE++ N +L
Sbjct:  328 FDFKVIEAATDKFSMCNKLGQGGFGQVYKGTLPNGVQVAVKRLSKTSGQGEKEFKNEVVVVAKLQHRNLVKLLGFCLEREEKILVYEFVSNKSL 421          

HSP 2 Score: 27.335 bits (59), Expect = 1.043e-22
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:  657 KLDWPXRHNICIGIARGLAY 716
            +LDW  R+ I  GIARG+ Y
Sbjct:  433 QLDWTTRYKIIGGIARGILY 452          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.349e-22
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTALLE 627
            FTL  I+ AT  +     IGEGGFG VY+G L DG  +AVK  S+ S QG REF NE+  +SA+QH +LV L G C E +Q +L+Y ++ N +LL+
Sbjct:  586 FTLEYIEQATEQYKTL--IGEGGFGSVYRGTLDDGQEVAVKVRSSTSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLD 679          

HSP 2 Score: 37.3502 bits (85), Expect = 1.349e-22
Identity = 18/34 (52.94%), Postives = 21/34 (61.76%), Query Frame = 3
Query:  615 SLARALFGPEEHRLKLDWPXRHNICIGIARGLAY 716
            SL   L+G    R  LDWP R +I +G ARGLAY
Sbjct:  676 SLLDRLYGEASKRKILDWPTRLSIALGAARGLAY 709          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: CRK30_ARATH (Putative cysteine-rich receptor-like protein kinase 30 OS=Arabidopsis thaliana GN=CRK30 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.355e-22
Identity = 45/94 (47.87%), Postives = 70/94 (74.47%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            F ++ I+AAT++F  +NKIG+GGFG VYKG L++GT +AVK+LS  S QG  EF NE+  ++ LQH +LV+L G  ++G + +L++E++ N +L
Sbjct:  334 FDIKDIEAATSNFLASNKIGQGGFGEVYKGTLSNGTEVAVKRLSRTSDQGELEFKNEVLLVAKLQHRNLVRLLGFALQGEEKILVFEFVPNKSL 427          

HSP 2 Score: 29.6462 bits (65), Expect = 1.355e-22
Identity = 18/36 (50.00%), Postives = 19/36 (52.78%), Query Frame = 3
Query:  615 SLARALFGPEEHRLK--LDWPXRHNICIGIARGLAY 716
            SL   LFG      K  LDW  R+NI  GI RGL Y
Sbjct:  426 SLDYFLFGSTNPTKKGQLDWTRRYNIIGGITRGLLY 461          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: CRK36_ARATH (Cysteine-rich receptor-like protein kinase 36 OS=Arabidopsis thaliana GN=CRK36 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.357e-22
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            F L  I  ATN F + NK+G+GGFG VYKG+L  G  IAVK+L+  S QG  EF NE+  ++ LQH +LVKL G C EGN+ +L+YE++ N++L
Sbjct:  328 FDLGMILIATNEFSLENKLGQGGFGSVYKGILPSGQEIAVKRLAGGSGQGELEFKNEVLLLTRLQHRNLVKLLGFCNEGNEEILVYEHVPNSSL 421          

HSP 2 Score: 27.7202 bits (60), Expect = 1.357e-22
Identity = 12/25 (48.00%), Postives = 15/25 (60.00%), Query Frame = 3
Query:  642 EEHRLKLDWPXRHNICIGIARGLAY 716
            E+ R  L W  R+ I  G+ARGL Y
Sbjct:  428 EDKRWLLTWDVRYRIIEGVARGLLY 452          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: CRK11_ARATH (Cysteine-rich receptor-like protein kinase 11 OS=Arabidopsis thaliana GN=CRK11 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.688e-22
Identity = 56/113 (49.56%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  283 RPKYTSERELRGLDLQTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            R K  SE ++   D     F  + I+AATN F  +NK+GEGGFG VYKG L++GT +AVK+LS KS QG REF NE   ++ LQH +LV+L G C+E  + +LIYE++ N +L
Sbjct:  321 RTKTESESDISTTDSLVYDF--KTIEAATNKFSTSNKLGEGGFGAVYKGKLSNGTDVAVKRLSKKSGQGTREFRNEAVLVTKLQHRNLVRLLGFCLEREEQILIYEFVHNKSL 431          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: CRK4_ARATH (Cysteine-rich receptor-like protein kinase 4 OS=Arabidopsis thaliana GN=CRK4 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.764e-22
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            F  + I+AATN F   NK+G+GGFG VYKG+   G  +AVK+LS  S QG REF NE+  ++ LQH +LV+L G C+E ++ +L+YE++ N +L
Sbjct:  339 FDFKAIEAATNKFCETNKLGQGGFGEVYKGIFPSGVQVAVKRLSKTSGQGEREFANEVIVVAKLQHRNLVRLLGFCLERDERILVYEFVPNKSL 432          

HSP 2 Score: 26.9498 bits (58), Expect = 1.764e-22
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  660 LDWPXRHNICIGIARGLAY 716
            LDW  R+ I  GIARG+ Y
Sbjct:  445 LDWTRRYKIIGGIARGILY 463          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: CRK24_ARATH (Cysteine-rich receptor-like protein kinase 24 OS=Arabidopsis thaliana GN=CRK24 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.766e-22
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            F  + I+AAT +F   NK+G GGFG VYKG   +GT +AVK+LS  S QG  EF NE+  ++ LQH +LVKL G  ++G++ +L+YE+L N +L
Sbjct:  300 FEFKAIEAATCNFHNVNKLGHGGFGEVYKGTFPNGTEVAVKRLSKTSGQGEEEFKNEVFLVAKLQHRNLVKLLGYAVKGDEKILVYEFLPNKSL 393          

HSP 2 Score: 31.187 bits (69), Expect = 1.766e-22
Identity = 17/38 (44.74%), Postives = 22/38 (57.89%), Query Frame = 3
Query:  603 LGKHSLARALFGPEEHRLKLDWPXRHNICIGIARGLAY 716
            L   SL   LF P + + +LDW  R+NI  GI RG+ Y
Sbjct:  388 LPNKSLDHFLFDPVK-KGQLDWTRRYNIINGITRGIVY 424          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: CRK12_ARATH (Putative cysteine-rich receptor-like protein kinase 12 OS=Arabidopsis thaliana GN=CRK12 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 2.294e-22
Identity = 45/91 (49.45%), Postives = 66/91 (72.53%), Query Frame = 1
Query:  349 RQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            + I+ AT +F   NK+G+GGFG VYKG L +GT +AVK+LS  S+QG +EF NE+  ++ LQH +LVKL G C+E  + +L+YE++ N +L
Sbjct:  358 KTIEVATENFAKTNKLGQGGFGEVYKGTLVNGTEVAVKRLSKTSEQGAQEFKNEVVLVAKLQHRNLVKLLGYCLEPEEKILVYEFVPNKSL 448          

HSP 2 Score: 29.6462 bits (65), Expect = 2.294e-22
Identity = 16/34 (47.06%), Postives = 20/34 (58.82%), Query Frame = 3
Query:  615 SLARALFGPEEHRLKLDWPXRHNICIGIARGLAY 716
            SL   LF P +   +LDW  R+NI  GI RG+ Y
Sbjct:  447 SLDYFLFDPTKQG-QLDWTKRYNIIGGITRGILY 479          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: CRK32_ARATH (Putative cysteine-rich receptor-like protein kinase 32 OS=Arabidopsis thaliana GN=CRK32 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.296e-22
Identity = 45/98 (45.92%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  328 QTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            Q+  F    ++AAT+ F   NK+G+GGFG VYKG+L + T +AVK+LS+ S QG +EF NE+  ++ LQH +LV+L G C+E ++ +L+YE++ N +L
Sbjct:  305 QSLQFDFMTLEAATDKFSRNNKLGKGGFGEVYKGMLPNETEVAVKRLSSNSGQGTQEFKNEVVIVAKLQHKNLVRLLGFCLERDEQILVYEFVPNKSL 402          

HSP 2 Score: 30.4166 bits (67), Expect = 2.296e-22
Identity = 18/41 (43.90%), Postives = 22/41 (53.66%), Query Frame = 3
Query:  615 SLARALFGPEEHRL-------KLDWPXRHNICIGIARGLAY 716
            SL   LFG ++  L       +LDW  R+NI  GI RGL Y
Sbjct:  401 SLNYFLFGNKQKHLLDPTKKSQLDWKRRYNIIGGITRGLLY 441          
The following BLAST results are available for this feature:
BLAST of FC930112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
CRK23_ARATH1.039e-2250.00Putative cysteine-rich receptor-like protein kinas... [more]
CRK5_ARATH1.043e-2248.94Cysteine-rich receptor-like protein kinase 5 OS=Ar... [more]
NORK_MEDTR1.349e-2248.96Nodulation receptor kinase OS=Medicago truncatula ... [more]
CRK30_ARATH1.355e-2247.87Putative cysteine-rich receptor-like protein kinas... [more]
CRK36_ARATH1.357e-2252.13Cysteine-rich receptor-like protein kinase 36 OS=A... [more]
CRK11_ARATH1.688e-2249.56Cysteine-rich receptor-like protein kinase 11 OS=A... [more]
CRK4_ARATH1.764e-2248.94Cysteine-rich receptor-like protein kinase 4 OS=Ar... [more]
CRK24_ARATH1.766e-2248.94Cysteine-rich receptor-like protein kinase 24 OS=A... [more]
CRK12_ARATH2.294e-2249.45Putative cysteine-rich receptor-like protein kinas... [more]
CRK32_ARATH2.296e-2245.92Putative cysteine-rich receptor-like protein kinas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34003H08EF PostHarvC1 Citrus clementina cDNA clone C34003H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930112 ID=FC930112; Name=FC930112; organism=Citrus clementina; type=EST; length=716bp
ATTGAGGAGGAAGCTGGTGGAGTTGGTAAACCAATTGTGAAACCATTTTC
TGCTGTCGTGACCAATGGGACCATGGATATCCGTCTCTATTGGGCAGGGA
AAGGGACAACTGAAATTCCTGAGAGAGGAGTTTATGGTCCTCTCATATCG
GCTATTTCTCTTCATAACCCTGATTTCGAAGGAAGCAGTGGCATATCAGT
AGGCACCGTGCTCGGAATTGTAGCGGCTGCAGCAGTTGTGATAATCCTAG
TTGTGGGTATCCTTTGGTGGAAGGGCTGTTTTAGACCAAAATATACATCG
GAACGAGAGCTGAGGGGTCTAGACTTGCAAACTGGTTCTTTTACCTTGAG
GCAAATTAAAGCTGCCACAAACCACTTTGATGTTGCTAACAAGATTGGTG
AAGGTGGTTTTGGCCCTGTTTACAAGGGCCTTTTGGCAGATGGCACTCTA
ATTGCTGTCAAGCAGCTTTCTGCCAAATCAAAGCAAGGAAATAGAGAGTT
CGTTAATGAGATTGGCACGATTTCTGCTTTGCAACACCCTCATCTTGTAA
AGCTTTATGGATGTTGCATTGAAGGAAATCAATTGTTATTGATATACGAG
TACTTGGAAAACACAGCCTTGCTAGAGCTTTGTTTGGTCCTGAAGAGCAT
CGGTTGAAGTTGGATTGGCCAANCAGACATAATATTTGCATCGGTATAGC
TAGAGGTTTAGCTTAT
back to top