FC930112

Overview
NameFC930112
Unique NameFC930112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: Y1743_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.151e-16
Identity = 41/113 (36.28%), Postives = 70/113 (61.95%), Query Frame = 1
Query:  307 ELRGLDLQTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISA-----LQHPHLVKLYGCCIEGNQLLLIYEYLENTALLEL 630
            +++ + L   +FT   I  AT++F     +G GG+G VY+G+L DG  +AVK+L  +  +  +EF  E+  +SA       HP+LV+LYG C++G++ +L++EY+   +L EL
Sbjct:  791 KIKVIRLDKSTFTYADILKATSNFSEERVVGRGGYGTVYRGVLPDGREVAVKKLQREGTEAEKEFRAEMEVLSANAFGDWAHPNLVRLYGWCLDGSEKILVHEYMGGGSLEEL 903          

HSP 2 Score: 23.483 bits (49), Expect = 1.151e-16
Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = 3
Query:  651 RLKLDWPXRHNICIGIARGLAY 716
            + KL W  R +I   +ARGL +
Sbjct:  907 KTKLQWKKRIDIATDVARGLVF 928          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: WAKLG_ARATH (Wall-associated receptor kinase-like 8 OS=Arabidopsis thaliana GN=WAKL8 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.384e-16
Identity = 40/106 (37.74%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  310 LRGLDLQTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTALLE 627
            L G   +T  F+   ++ AT+ F+ +  +G+GG G VYKG+L DG ++AVK+  A  ++   EF+NEI  +S + H ++VK+ GCC+E    +L+YE++ N  L +
Sbjct:  368 LHGSVNRTKVFSSNDLENATDRFNASRILGQGGQGTVYKGMLEDGMIVAVKKSKALKEENLEEFINEIILLSQINHRNVVKILGCCLETEVPILVYEFIPNRNLFD 473          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: KPRO_MAIZE (Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.505e-16
Identity = 39/113 (34.51%), Postives = 64/113 (56.64%), Query Frame = 1
Query:  292 YTSERELRGLDLQTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTALLEL 630
            + SE+  + +      ++ R++  AT  F V  ++G G  G VYKG+L D   +AVK+L    +QG   F  E+  I  + H +LV+++G C EG+  LL+ EY+EN +L  +
Sbjct:  508 WASEKGYKAMTSNFRRYSYRELVKATRKFKV--ELGRGESGTVYKGVLEDDRHVAVKKLE-NVRQGKEVFQAELSVIGRINHMNLVRIWGFCSEGSHRLLVSEYVENGSLANI 617          

HSP 2 Score: 35.8094 bits (81), Expect = 1.505e-16
Identity = 18/34 (52.94%), Postives = 22/34 (64.71%), Query Frame = 3
Query:  615 SLARALFGPEEHRLKLDWPXRHNICIGIARGLAY 716
            SLA  LF  E   + LDW  R NI +G+A+GLAY
Sbjct:  613 SLANILFS-EGGNILLDWEGRFNIALGVAKGLAY 645          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: WAKLK_ARATH (Putative wall-associated receptor kinase-like 11 OS=Arabidopsis thaliana GN=WAKL11 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 39/100 (39.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  328 QTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTALLE 627
            +T  F+ R+++ AT++F  +  +G+GG G VYKG+L DG  +AVK+     +    EF+NE+  +S + H H+VKL GCC+E     L+YE++ N  L +
Sbjct:  435 KTRIFSSRELEKATDNFSESRILGQGGQGTVYKGMLVDGRTVAVKKSKVVDEDKLEEFINEVVILSQINHRHVVKLLGCCLETEVPTLVYEFIPNGNLFQ 534          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: WAKLC_ARATH (Wall-associated receptor kinase-like 3 OS=Arabidopsis thaliana GN=WAKL3 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 38/96 (39.58%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTALLE 627
            F+ R+++ AT++F +   +G+GG G VYK +L DG+++AVK+     +    EF+NEI  +S + H ++VKL GCC+E    +L+YEY+ N  L +
Sbjct:  416 FSSRELEKATDNFSIDRVLGQGGQGTVYKRMLVDGSIVAVKRSKVVDEDKMEEFINEIVLLSQINHRNIVKLLGCCLETEVPILVYEYIPNGDLFK 511          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: CRK13_ARATH (Cysteine-rich receptor-like protein kinase 13 OS=Arabidopsis thaliana GN=CRK13 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.361e-16
Identity = 41/94 (43.62%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            +  + I+ ATN+F  + ++G GG G V+KG L DG  IAVK+LS K++Q  +EF NE+  ++ LQH +LV+L G  ++G + +++YEYL N +L
Sbjct:  348 YKFKTIETATNNF--SERLGHGGSGHVFKGRLPDGKEIAVKRLSEKTEQSKKEFKNEVVLVAKLQHRNLVRLLGFSVKGEEKIIVYEYLPNRSL 439          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.559e-16
Identity = 36/96 (37.50%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTALLE 627
            F+ R+I+ AT++F   N +G+GGFG VYKG L +GT++AVK+L      G  +F  E+  I    H +L++L+G C+   + +L+Y Y+ N ++ +
Sbjct:  288 FSFREIQTATSNFSPKNILGQGGFGMVYKGYLPNGTVVAVKRLKDPIYTGEVQFQTEVEMIGLAVHRNLLRLFGFCMTPEERMLVYPYMPNGSVAD 383          

HSP 2 Score: 26.9498 bits (58), Expect = 2.559e-16
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  660 LDWPXRHNICIGIARGLAY 716
            LDW  R +I +G ARGL Y
Sbjct:  395 LDWNRRISIALGAARGLVY 413          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: WAKLH_ARATH (Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16
Identity = 40/104 (38.46%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  316 GLDLQTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTALLE 627
            G+  +T  F+ R+++ AT +F     +G+GG G VYKG+L DG ++AVK+     +    EF+NE+  +S + H ++VKL GCC+E    +L+YE++ N  L E
Sbjct:  427 GMVEKTIVFSSRELEKATENFSSNRILGQGGQGTVYKGMLVDGRIVAVKKSKVVDEDKLEEFINEVVILSQINHRNIVKLLGCCLETKVPVLVYEFIPNGNLFE 530          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.357e-16
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  337 SFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTL----------IAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            SFT  ++KAAT +F   + +GEGGFG V+KG + + TL          IAVK+L+    QG++E++ E+  +    HP+LVKL G C+E    LL+YE++   +L
Sbjct:   56 SFTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSL 160          

HSP 2 Score: 25.0238 bits (53), Expect = 3.357e-16
Identity = 12/34 (35.29%), Postives = 17/34 (50.00%), Query Frame = 3
Query:  615 SLARALFGPEEHRLKLDWPXRHNICIGIARGLAY 716
            SL   LF    +   L W  R  + +G A+GLA+
Sbjct:  159 SLENHLFRRGSYFQPLSWTLRLKVALGAAKGLAF 192          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: Y2232_ARATH (Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.028e-16
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  355 IKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTALLE 627
            I +ATN+FD    IG+GGFG VYK +L DGT  A+K+    S QG  EF  EI  +S ++H HLV L G C E ++++L+YE++E   L E
Sbjct:  481 ILSATNNFDEQLLIGKGGFGYVYKAILPDGTKAAIKRGKTGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKGTLKE 571          
The following BLAST results are available for this feature:
BLAST of FC930112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
Y1743_ARATH1.151e-1636.28Probable LRR receptor-like serine/threonine-protei... [more]
WAKLG_ARATH1.384e-1637.74Wall-associated receptor kinase-like 8 OS=Arabidop... [more]
KPRO_MAIZE1.505e-1634.51Putative receptor protein kinase ZmPK1 OS=Zea mays... [more]
WAKLK_ARATH1.808e-1639.00Putative wall-associated receptor kinase-like 11 O... [more]
WAKLC_ARATH1.808e-1639.58Wall-associated receptor kinase-like 3 OS=Arabidop... [more]
CRK13_ARATH2.361e-1643.62Cysteine-rich receptor-like protein kinase 13 OS=A... [more]
Y5457_ARATH2.559e-1637.50Probable LRR receptor-like serine/threonine-protei... [more]
WAKLH_ARATH3.084e-1638.46Wall-associated receptor kinase-like 9 OS=Arabidop... [more]
APK1B_ARATH3.357e-1640.00Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
Y2232_ARATH4.028e-1647.25Probable receptor-like protein kinase At2g23200 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34003H08EF PostHarvC1 Citrus clementina cDNA clone C34003H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930112 ID=FC930112; Name=FC930112; organism=Citrus clementina; type=EST; length=716bp
ATTGAGGAGGAAGCTGGTGGAGTTGGTAAACCAATTGTGAAACCATTTTC
TGCTGTCGTGACCAATGGGACCATGGATATCCGTCTCTATTGGGCAGGGA
AAGGGACAACTGAAATTCCTGAGAGAGGAGTTTATGGTCCTCTCATATCG
GCTATTTCTCTTCATAACCCTGATTTCGAAGGAAGCAGTGGCATATCAGT
AGGCACCGTGCTCGGAATTGTAGCGGCTGCAGCAGTTGTGATAATCCTAG
TTGTGGGTATCCTTTGGTGGAAGGGCTGTTTTAGACCAAAATATACATCG
GAACGAGAGCTGAGGGGTCTAGACTTGCAAACTGGTTCTTTTACCTTGAG
GCAAATTAAAGCTGCCACAAACCACTTTGATGTTGCTAACAAGATTGGTG
AAGGTGGTTTTGGCCCTGTTTACAAGGGCCTTTTGGCAGATGGCACTCTA
ATTGCTGTCAAGCAGCTTTCTGCCAAATCAAAGCAAGGAAATAGAGAGTT
CGTTAATGAGATTGGCACGATTTCTGCTTTGCAACACCCTCATCTTGTAA
AGCTTTATGGATGTTGCATTGAAGGAAATCAATTGTTATTGATATACGAG
TACTTGGAAAACACAGCCTTGCTAGAGCTTTGTTTGGTCCTGAAGAGCAT
CGGTTGAAGTTGGATTGGCCAANCAGACATAATATTTGCATCGGTATAGC
TAGAGGTTTAGCTTAT
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