FC930134

Overview
NameFC930134
Unique NameFC930134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930134 vs. ExPASy Swiss-Prot
Match: TRPA1_MOUSE (Transient receptor potential cation channel subfamily A member 1 OS=Mus musculus GN=Trpa1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 57/195 (29.23%), Postives = 92/195 (47.18%), Query Frame = 3
Query:  111 KQLTAKRDD---TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMDQSGETALYVAAEYGYVDMVREMIR-YHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA 683
            K+L    D+   TPL    R G    V +++           +    +  ++ L+ AA YG ++  + +++   DT L      +G    H+AAK G  +V+++L++     L   D +  TALH AS  G+ + +K +L+            G TALH AAR GH + V  LLS    I+L  +KK  + LH+A
Sbjct:  404 KELVMDEDNDGCTPLHYACRQGVPVSVNNLLG------FNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKK--GALFLSDHNGWTALHHASMGGYTQTMKVILDTNLKCTDRLDEEGNTALHFAAREGHAKAVAMLLSYNADILL--NKKQASFLHIA 588          
BLAST of FC930134 vs. ExPASy Swiss-Prot
Match: DAPK1_HUMAN (Death-associated protein kinase 1 OS=Homo sapiens GN=DAPK1 PE=1 SV=5)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 53/152 (34.87%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  228 LSKMDQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA 683
            L   D+SGE AL+VAA YG+ D+ + +  +   S   I+ +      H AA  G   V K L EA   + +  +    T L TAS++G+ ++V+ L E G+ L      +G  ALH A R   +E++K LLS +   V   D+ G T LH+A
Sbjct:  438 LDVKDKSGEMALHVAARYGHADVAQLLCSF--GSNPNIQDKEEETPLHCAAWHGYYSVAKALCEAGCNVNIK-NREGETPLLTASARGYHDIVECLAEHGADL-NACDKDGHIALHLAVRRCQMEVIKTLLS-QGCFVDYQDRHGNTPLHVA 584          
BLAST of FC930134 vs. ExPASy Swiss-Prot
Match: ANKR6_HUMAN (Ankyrin repeat domain-containing protein 6 OS=Homo sapiens GN=ANKRD6 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 55/186 (29.57%), Postives = 92/186 (49.46%), Query Frame = 3
Query:  126 KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMDQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA 683
            K   TPL      G + +V  ++ +  D++++      D   +TAL+ A   G  +++  +I  H+      + ++G  A H A+  G  +  K+L++A   +L    + NT ALH A    H +  + LL  GS  A +  + G T LH AAR  HL I++ LL+    +  +N + G TALH+A
Sbjct:   40 KHGRTPLHLAANKGHLPVVQILLKAGCDLDVQ------DDGDQTALHRATVVGNTEIIAALI--HEGCALDRQDKDGNTALHEASWHGFSQSAKLLVKAGANVLAKNKAGNT-ALHLACQNSHSQSTRVLLLAGSR-ADLKNNAGDTCLHVAARYNHLSIIRLLLTAFCSVHEKN-QAGDTALHVA 214          
BLAST of FC930134 vs. ExPASy Swiss-Prot
Match: ANKH1_HUMAN (Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 54/186 (29.03%), Postives = 91/186 (48.92%), Query Frame = 3
Query:  138 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMDQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCL----EVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA 683
            TPL      G VE+   ++     +         ++  E+AL +A   G++DMVR ++       AG    +  D  H A  + C+    EV ++L+++  ++ M  DS  +  L  A+  GHVE+   L+E+G+ L  +    G T L  AAR GH E+V  LL++   I  + ++  +TAL +A
Sbjct:  340 TPLMEAASAGHVEVARVLLDHGAGINTHS-----NEFKESALTLACYKGHLDMVRFLLE------AGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESP-LTLAACGGHVELAALLIERGANLEEV-NDEGYTPLMEAAREGHEEMVALLLAQGANINAQTEETQETALTLA 512          
BLAST of FC930134 vs. ExPASy Swiss-Prot
Match: YD58_SCHPO (Ankyrin repeat-containing protein C6C3.08 OS=Schizosaccharomyces pombe GN=SPAC6C3.08 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 58/207 (28.02%), Postives = 95/207 (45.89%), Query Frame = 3
Query:   72 PPSEQQQSWKKMKKQLTAKRDD--TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMDQSGETALYVAAEYGYV--DMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHM 680
            P    +Q+ +     L A  DD  TPL      G V  +  ++             + D++G T L ++     V  +++ E+I   D     I  R G    H AA +G L ++++L +  PEL+   D    T LH A++ G ++VVK+L+ + + L T + S G T LH A   GH ++   L+ +     LR D +  TAL +
Sbjct:   15 PEEYVEQAIQNDPNSLNAVDDDKRTPLHWACSVGKVNTIYFLLKQPNIKP-----DEKDEAGWTPLMISINNRSVPDNVIEELINRSDVDPT-ITTRGGQTCLHYAAGKGRLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKYLISQRAPLNT-SDSYGFTPLHFALAEGHPDVGVELV-RAGADTLRKDSENHTALEV 213          
BLAST of FC930134 vs. ExPASy Swiss-Prot
Match: RIPK4_MOUSE (Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 53/190 (27.89%), Postives = 89/190 (46.84%), Query Frame = 3
Query:  210 MELREMLSKMDQSGETALYVAAEYGYVDMVREMIRYH-DTSLAGIKA-------------------------------RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA 683
            +E    ++++D  G T ++VA ++G  ++VR ++R   D  L G  A                                +G    H+AA++G   V +IL++   ++ +    + T  LH A+  GH    + LL +G+    +  S G TALH AA+NGHL  VK L+ ++  ++ R     QTALH+A
Sbjct:  526 LEKNASVNEVDFEGRTPMHVACQHGQENIVRTLLRRGVDVGLQGKDAWLPLHYAAWQGHLPIVKLLAKQPGVSVNAQTLDGRTPLHLAAQRGHYRVARILIDLCSDVNICSLQAQTP-LHVAAETGHTSTARLLLHRGAGKEALT-SEGYTALHLAAQNGHLATVKLLIEEKADVMARG-PLNQTALHLA 712          

HSP 2 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 49/148 (33.11%), Postives = 83/148 (56.08%), Query Frame = 3
Query:  249 GETALYVAAEYGYVDMVREMIRY-HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA 683
            G T L++AA+ G+  + R +I    D ++  ++A+      H+AA+ G     ++L+   A  E L    S   TALH A+  GH+  VK L+E+ + +      N +TALH AA  GH E+V+ L+S +  ++  +D++G +ALH+A
Sbjct:  606 GRTPLHLAAQRGHYRVARILIDLCSDVNICSLQAQT---PLHVAAETGHTSTARLLLHRGAGKEALT---SEGYTALHLAAQNGHLATVKLLIEEKADVMARGPLN-QTALHLAAARGHSEVVEELVSAD--LIDLSDEQGLSALHLA 744          
BLAST of FC930134 vs. ExPASy Swiss-Prot
Match: RN5A_MOUSE (2-5A-dependent ribonuclease OS=Mus musculus GN=Rnasel PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 58/196 (29.59%), Postives = 91/196 (46.43%), Query Frame = 3
Query:  114 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMDQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTL---------ATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTAL 674
            Q T   DD+ L   V+ G V  V  ++    D    E     D  G T L+ A + G VD+V  ++ +        + +NG   F IA  QG +++L+IL+    ++    D +  TA   A+ +G+ E ++FL  KG+ +             +  G TAL SAA  GHLE+++ LL+     V   D  G+ AL
Sbjct:   19 QRTVVEDDSSLIKAVQKGDVVRVQQLLEKGADANACE-----DTWGWTPLHNAVQAGRVDIVNLLLSHGADPHR--RKKNGATPFIIAGIQGDVKLLEILLSCGADV-NECDENGFTAFMEAAERGNAEALRFLFAKGANVNLRRQTTKDKRRLKQGGATALMSAAEKGHLEVLRILLNDMKAEVDARDNMGRNAL 206          
BLAST of FC930134 vs. ExPASy Swiss-Prot
Match: FEM1C_MOUSE (Protein fem-1 homolog C OS=Mus musculus GN=Fem1c PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 56/187 (29.95%), Postives = 93/187 (49.73%), Query Frame = 3
Query:  138 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMDQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN-------GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALH 677
            T + +  R G + L+  +++S    E+  ++S+   +G T L +AA YG++DMV  ++     S+    + N       G      A+  G L+V++ L+     +  T   +N+T L  A   GH+E+VK+L+E  + L  ++  +G T L  +   GH EI + LL K    V R   KG TALH
Sbjct:    5 TAVFNAARDGKLRLLTKLLASKSKAEVSSLISEKT-NGATPLLMAARYGHLDMVEFLLEQCSASIEVGGSVNFDGETIEGAPPLWAASAAGHLKVVQSLLNHGASVNNT-TLTNSTPLRAACFDGHLEIVKYLVEHKADL-EVSNRHGHTCLMISCYKGHKEIAQYLLEKGAD-VNRKSVKGNTALH 187          
BLAST of FC930134 vs. ExPASy Swiss-Prot
Match: FEM1A_HUMAN (Protein fem-1 homolog A OS=Homo sapiens GN=FEM1A PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 55/190 (28.95%), Postives = 92/190 (48.42%), Query Frame = 3
Query:  138 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMDQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN----------GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALH 677
            T + +  R G ++L+  ++S     EL E+  ++   G T L +AA YG++D+V  ++   D   A ++A            G      A+  G L+V++ L+     +  T   +N+T L  A   GH+EVV++L+ +      +A  +G T L  +   GH EI + LL ++   V R   KG TALH
Sbjct:    5 TAVYNAARDGKLQLLQKLLSGRSREELDELTGEV-AGGGTPLLIAARYGHLDVVEYLV---DRCGASVEAGGSVHFDGETIEGAPPLWAASAAGHLDVVRSLLRRGASVNRT-TRTNSTPLRAACFDGHLEVVRYLVGEHQADLEVANRHGHTCLMISCYKGHREIARYLL-EQGAQVNRRSAKGNTALH 188          
BLAST of FC930134 vs. ExPASy Swiss-Prot
Match: DAPK1_MOUSE (Death-associated protein kinase 1 OS=Mus musculus GN=Dapk1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 52/152 (34.21%), Postives = 78/152 (51.32%), Query Frame = 3
Query:  228 LSKMDQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA 683
            L   D+SGETAL+VAA YG+ D+V+ +  +   S    + +      H AA  G   V K L E    + +  +    T L TAS++G+ ++V+ L E G+ L   +  +G  ALH A R   +E++K LL      V   D+ G T LH+A
Sbjct:  438 LDVKDKSGETALHVAARYGHADVVQLLCSF--GSNPDFQDKEEETPLHCAAWHGYYSVAKALCEVGCNVNIK-NREGETPLLTASARGYHDIVECLAEHGADL-NASDKDGHIALHLAVRRCQMEVIKTLLG-HGSFVDFQDRHGNTPLHVA 584          
The following BLAST results are available for this feature:
BLAST of FC930134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
TRPA1_MOUSE1.238e-1129.23Transient receptor potential cation channel subfam... [more]
DAPK1_HUMAN1.238e-1134.87Death-associated protein kinase 1 OS=Homo sapiens ... [more]
ANKR6_HUMAN1.238e-1129.57Ankyrin repeat domain-containing protein 6 OS=Homo... [more]
ANKH1_HUMAN1.238e-1129.03Ankyrin repeat and KH domain-containing protein 1 ... [more]
YD58_SCHPO1.617e-1128.02Ankyrin repeat-containing protein C6C3.08 OS=Schiz... [more]
RIPK4_MOUSE1.617e-1127.89Receptor-interacting serine/threonine-protein kina... [more]
RN5A_MOUSE2.112e-1129.592-5A-dependent ribonuclease OS=Mus musculus GN=Rna... [more]
FEM1C_MOUSE2.112e-1129.95Protein fem-1 homolog C OS=Mus musculus GN=Fem1c P... [more]
FEM1A_HUMAN2.112e-1128.95Protein fem-1 homolog A OS=Homo sapiens GN=FEM1A P... [more]
DAPK1_MOUSE2.112e-1134.21Death-associated protein kinase 1 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC34004B07EF PostHarvC1 Citrus clementina cDNA clone C34004B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930134 ID=FC930134; Name=FC930134; organism=Citrus clementina; type=EST; length=685bp
GAGAGGCAGAGCAGCTCTTGGTTTTCAAAGCCAAGACCCTTGTTATTAAT
AGGGAATTGATTAGGATGGAGCCTCCTTCGGAGCAGCAGCAAAGCTGGAA
AAAGATGAAAAAACAGTTGACAGCAAAGCGAGATGACACACCATTGCAGT
CTCTGGTGAGAACAGGAAGTGTTGAATTGGTTTTGGATATGATTTCTAGT
TATGGGGATATGGAGTTGAGAGAGATGTTGTCGAAAATGGACCAATCTGG
TGAAACTGCACTGTATGTCGCTGCTGAGTATGGTTATGTTGATATGGTGA
GGGAAATGATCAGGTATCATGATACTAGTTTGGCTGGTATCAAAGCAAGA
AATGGCTACGATGCATTCCACATTGCTGCTAAGCAAGGATGCTTGGAGGT
ATTGAAGATTCTCATGGAGGCACTTCCTGAACTTTTGATGACTTTTGATT
CCTCGAACACCACAGCATTACACACAGCTTCCTCACAAGGCCATGTTGAA
GTAGTGAAATTTCTCTTGGAGAAAGGTAGTACCCTAGCCACCATTGCTAG
AAGCAATGGGAAAACGGCTTTGCATTCTGCAGCTAGGAATGGACATCTGG
AGATTGTGAAGGCCCTTTTGAGTAAAGAACCTGGCATTGTTTTGAGGAAC
GATAAGAAGGGTCAGACAGCTCTCCATATGGCCGT
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