FC930146

Overview
NameFC930146
Unique NameFC930146
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930146_ssr35 microsatellite FC930146_ssr35:35..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14856 contig Ccv1_Contig14856:928..1631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_GEOTN (1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rocA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.805e-27
Identity = 68/213 (31.92%), Postives = 121/213 (56.81%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTI-VEISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQG 635
            + + E+ G +          +LA +S++ +A G +GQ+C+ C R +I E +Y  VL+++V++ KQ+ +GDP E+ T +GP+    +     + IE I  Q G+++ GG   +S+G F+QPT+  ++ P A I++EE+F PV+   K + F+ A++I N+   GL+ ++ +R+  N+ K    H    G +  N    GA +G   FGG  + G
Sbjct:  282 RVIAEMGGKDAIVVDKEADLELAAQSIVASAFGFSGQKCSACSRAIIVEDVYDQVLNRVVELTKQLNVGDPAEQATFMGPVIDQGAYNKIMEYIE-IGKQEGRLMTGGEGDDSKGFFIQPTVFADVDPNARIMQEEIFGPVVAFAKARDFDHALEIANNTQYGLTGAVISRNRANLEK--ARHEFHVGNLYFNRGCTGAIVGYQPFGGFNMSG 491          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_GEOKA (1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus kaustophilus GN=rocA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.491e-27
Identity = 67/213 (31.46%), Postives = 120/213 (56.34%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTI-VEISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQG 635
            + + E+ G +          +LA +S++ +A G +GQ+C+ C R +I E +Y  VL ++V++ KQ+ +GDP E+ T +GP+    +     + IE I  Q G+++ GG   +++G F+QPT+  ++ P A I++EE+F PV+   K + F+ A++I N+   GL+ ++ +R+  N+ K    H    G +  N    GA +G   FGG  + G
Sbjct:  282 RVIAEMGGKDAIVVDKEADLELAAQSIVASAFGFSGQKCSACSRAIIVEDVYDQVLSRVVELTKQLNVGDPAEQATFMGPVIDQNAYNKIMEYIE-IGKQEGRLMTGGEGDDAKGFFIQPTVFADVDPNARIMQEEIFGPVVAFAKARDFDHALEIANNTEYGLTGAVISRNRANLEK--ARHEFHVGNLYFNRGCTGAIVGYQPFGGFNMSG 491          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ALDH1_BACSU (Probable aldehyde dehydrogenase ycbD OS=Bacillus subtilis GN=ycbD PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.467e-26
Identity = 77/228 (33.77%), Postives = 117/228 (51.32%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIES----EGNFVQPTIVE-ISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLG-PHGSDTGIVNVNIPTNGAEIGGAFGG-------ERLQGEAVK 647
            K  LE+ G N          + A  +V+  A  + GQ+CT   R+++   IY+   ++L+   K + IGD L++   +GP+ +     N    IE  K +G  +LIGG  +E+     G +VQP I + ++    I +EE+F PV+ ++K  + EEA+ I N V  GLS+SIFT   ENI + L      D G+V +N  + G E+   FGG        R QGEA K
Sbjct:  251 KYQLEMGGKNPVIVADDADLEAAAEAVITGAFRSTGQKCTATSRVIVQSGIYERFKEKLLQRTKDITIGDSLKEDVWMGPIASKNQLDNCLSYIEKGKQEGASLLIGGEKLENGKYQNGYYVQPAIFDNVTSEMTIAQEEIFGPVIALIKVDSIEEALNIANDVKFGLSASIFT---ENIGRMLSFIDEIDAGLVRINAESAGVELQAPFGGMKQSSSHSREQGEAAK 475          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_GEOSW (1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus sp. (strain WCH70) GN=rocA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.221e-26
Identity = 66/213 (30.99%), Postives = 121/213 (56.81%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTI-VEISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQG 635
            + + E+ G +          +LA +S++ +A G +GQ+C+ C R +I E +Y  VL+++V++ KQ+K+GDP ++ T +GP+    +     + IE I  + G+++ GG   +S+G F+QPT+  ++ P A I++EE+F PV+   K + F+ A++I N+   GL+ ++ +R+  N+ K         G +  N    GA +G   FGG  + G
Sbjct:  282 RVIAEMGGKDGIVVDKEADLELAAQSIVASAFGFSGQKCSACSRAIIVEDVYDQVLNRVVELTKQLKVGDPADQSTFMGPVIDQSAYNKIMEYIE-IGKKEGRLMTGGEGDDSKGFFIQPTVFADVDPNARIMQEEIFGPVVAFTKAKDFDHALEIANNTEYGLTGAVISRNRANLEK--AREEFHVGNLYFNRGCTGAIVGYQPFGGFNMSG 491          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_STAHJ (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rocA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.177e-26
Identity = 69/217 (31.80%), Postives = 119/217 (54.84%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIVEISPTAD-IVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQGEAVK 647
            + + E+ G +           LA  S++ +A G +GQ+C+ C R ++H S+Y  VL++ V + K++ +G+ ++  T +GP+   +     +K IE I  + GKI IGG   +S G F++PTI+    ++D +++EE+F PV+   KF  FEEA++I N    GL+ ++ T + EN  K +     D G + +N     A +G   FGG ++ G   K
Sbjct:  282 RVIAEMGGKDAIVVDENIDTDLAAESIITSAFGFSGQKCSACSRAIVHSSVYDEVLEKAVALTKELTVGNTVD-NTFMGPVINKKQFDKIKKYIE-IGGKEGKIEIGGEADDSTGYFIKPTIISGLKSSDQVMQEEIFGPVVGFTKFDNFEEAIEIANDTDYGLTGAVITNNRENWIKAVNEF--DVGNLYLNRGCTAAVVGYHPFGGFKMSGTDAK 494          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_BACCN (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rocA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25
Identity = 69/215 (32.09%), Postives = 122/215 (56.74%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIE--NIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQG 635
            + + E+ G +          +LA +S++ +A G +GQ+C+ C R +IHE +Y  VL++ V++ K++ +G+P EKGT +GP++    +  F+K +    I  + GKI+ GG   +S+G F+QPTIV +++  A ++KEE+F PV+   K + F+ A+ I N+   GL+ ++ + +  +I K         G +  N    GA +G   FGG  + G
Sbjct:  282 RVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEEVYDQVLNRAVELTKELTVGNPAEKGTNMGPVN---DQAAFDKVMSYVAIGKEEGKIVAGGEGDDSKGWFIQPTIVADVAEDARLMKEEIFGPVVAFCKAKDFDHALAIANNTEYGLTGAVISNNRAHIEK--AREDFHVGNLYFNRGCTGAIVGYQPFGGFNMSG 491          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ALDH_BACST (Aldehyde dehydrogenase, thermostable OS=Bacillus stearothermophilus GN=aldHT PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 74/225 (32.89%), Postives = 116/225 (51.56%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGS-VIESE---GNFVQPTIVE-ISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIGGAFGG-------ERLQGEA 641
            K  LE+ G N           LAV   +   + + GQ+CT   R+ I   +Y+    +L++  KQ+KIG+ L+  T +GP  +          IE  KS+G K++ GG+  +E E   G FV+PTI E +     I +EE+F PVL +++  + EEA+K+ N    GLS+SI+T++  N  +++     + G++ VN  T G E    FGG        R QG+A
Sbjct:  251 KYQLEMGGKNPVIVAKDADLDLAVEGTISGGLRSTGQKCTATSRVFIEREVYEPFKAKLLERVKQLKIGNGLDAETWMGPCASESQFHTVLSYIEKGKSEGAKLIYGGNRCLEGELANGFFVEPTIFEDVDLQMTIAREEIFGPVLALIQVDSIEEAIKLANDTEYGLSASIYTKNIGNALEFI--KDIEAGLIKVNAETAGVEFQAPFGGMKQSSSHSREQGQA 473          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ALDH5_BACSU (Putative aldehyde dehydrogenase yfmT OS=Bacillus subtilis GN=yfmT PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 73/213 (34.27%), Postives = 109/213 (51.17%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGG-KILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIGGAFGGERLQG 635
            K LLEL GN+          + AV + +F+     GQ C +  R+L+H SIY   L+      + +K+GDP++  T++GPL          K +E    +G   + +GG      G  V+PTI+ ++ P   I KEELF PV+  MKF + +EAV I N  P GLS ++ T + E    +      +TG+++VN  T   E   AFGGE+  G
Sbjct:  249 KPLLELGGNSAFIVLEDADIEYAVNAAVFSRFTHQGQICMSANRVLVHSSIYDKFLELYQAKVESLKVGDPMDPDTIIGPLINSRQTDGLMKTVEQAIEEGAVPVKLGG----FNGTIVEPTILKDVKPFMSIAKEELFGPVVSFMKFDSEDEAVDIANETPFGLSGAVHTSNLERGVAF--AKRIETGMIHVNDTTINDEPNVAFGGEKQSG 455          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_ANOFW (1-pyrroline-5-carboxylate dehydrogenase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rocA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 66/213 (30.99%), Postives = 120/213 (56.34%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTI-VEISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQG 635
            + + E+ G +          +LA +S++ +A G +GQ+C+ C R++  E +Y  VL+++V++ KQ+K+G+P E+ T +GP+    +     + IE I  Q GK++ GG   +S+G F+QPT+  ++ P A I++EE+F PV+   K + F+ A++I N+   GL+ ++ + +  N+ K         G +  N    GA +G   FGG  + G
Sbjct:  282 RVIAEMGGKDTIVVDKEADLELAAQSIVASAFGFSGQKCSACSRVVALEDVYDQVLNRVVELTKQLKVGNPEEQSTFMGPVIDQSAYNKIMEYIE-IGKQEGKLMTGGEGDDSKGFFIQPTVFADLDPKARIMQEEIFGPVVAFTKAKDFDHALEIANNTEYGLTGAVISNNRFNLEK--AREEFHVGNLYFNRGCTGAIVGYHPFGGFNMSG 491          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_BACCR (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rocA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 67/215 (31.16%), Postives = 120/215 (55.81%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIE--NIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQG 635
            + + E+ G +          +LA +S++ +A G +GQ+C+ C R +IHE +Y  VL++ V++ K++ + +P   GT +GP++    +  F+K +    I  + G+IL GG   +S+G F+QPTIV +++  A ++KEE+F PV+   K + F+ A+ I N+   GL+ ++ T + ++I K         G +  N    GA +G   FGG  + G
Sbjct:  282 RVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPAVLGTNMGPVN---DQAAFDKVMSYVAIGKEEGRILAGGEGDDSKGWFIQPTIVADVAEDARLMKEEIFGPVVAFCKAKDFDHALAIANNTEYGLTGAVITNNRDHIEK--AREDFHVGNLYFNRGCTGAIVGYQPFGGFNMSG 491          
The following BLAST results are available for this feature:
BLAST of FC930146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ROCA_GEOTN3.805e-2731.921-pyrroline-5-carboxylate dehydrogenase OS=Geobaci... [more]
ROCA_GEOKA6.491e-2731.461-pyrroline-5-carboxylate dehydrogenase OS=Geobaci... [more]
ALDH1_BACSU2.467e-2633.77Probable aldehyde dehydrogenase ycbD OS=Bacillus s... [more]
ROCA_GEOSW3.221e-2630.991-pyrroline-5-carboxylate dehydrogenase OS=Geobaci... [more]
ROCA_STAHJ7.177e-2631.801-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_BACCN2.088e-2532.091-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ALDH_BACST2.727e-2532.89Aldehyde dehydrogenase, thermostable OS=Bacillus s... [more]
ALDH5_BACSU2.727e-2534.27Putative aldehyde dehydrogenase yfmT OS=Bacillus s... [more]
ROCA_ANOFW4.652e-2530.991-pyrroline-5-carboxylate dehydrogenase OS=Anoxyba... [more]
ROCA_BACCR8.773e-2431.161-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]

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Properties
Property NameValue
Genbank descriptionC34004C07EF PostHarvC1 Citrus clementina cDNA clone C34004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930146 ID=FC930146; Name=FC930146; organism=Citrus clementina; type=EST; length=704bp
GTAAATGTTTACTTGAATTAAGTGGAAACAATGCTATTATTATTATGGAT
GATGCCGACATCAAACTAGCTGTTCGTTCTGTCCTATTTGCTGCTGTCGG
TACAGCTGGTCAGCGCTGCACAACTTGTCGTAGACTGCTTATTCACGAAA
GCATATACCAGACAGTGCTTGATCAACTAGTTGATGTGTACAAACAAGTT
AAGATAGGAGATCCATTAGAAAAAGGTACCTTGCTCGGGCCATTGCATAC
TCCTGAATCAAGGAAGAATTTCGAGAAAGGAATTGAGAACATCAAATCTC
AGGGAGGGAAGATCCTTATAGGTGGTTCTGTTATAGAGTCTGAGGGGAAC
TTTGTGCAGCCCACAATAGTTGAGATTAGTCCAACAGCTGACATTGTTAA
AGAAGAGTTGTTTGCTCCTGTCCTTTATGTTATGAAATTTCAGACCTTCG
AAGAAGCAGTTAAGATCAATAATTCAGTACCCCAGGGATTGAGTAGTTCT
ATTTTCACCCGCAGTCCTGAAAATATTTTCAAGTGGCTAGGGCCACATGG
AAGTGACACTGGTATTGTGAATGTAAATATACCTACAAATGGGGCTGAAA
TTGGTGGTGCTTTTGGTGGTGAAAGGCTACAGGGGGAGGCCGTGAAGCAG
GAAGTGATTCTTGGAAGCATACATGCGACGCTCGACTTGCACAATCACTA
TGGA
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