FC930146

Overview
NameFC930146
Unique NameFC930146
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930146_ssr35 microsatellite FC930146_ssr35:35..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14856 contig Ccv1_Contig14856:928..1631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_STAS1 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rocA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 66/218 (30.28%), Postives = 116/218 (53.21%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIVEISPTAD-IVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWL-GPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQGEAVK 647
            + + E+ G +           LA  S++ +A G +GQ+C+ C R ++H+ +Y  VL++ V + K + +G+  E  T +GP+   +     +  IE I S+ GK+  GG   ++ G FV+PTI+    ++D I++EE+F PV+  +K + FEE ++I N    GL+ ++ T + EN   W+      D G + +N     A +G   FGG ++ G   K
Sbjct:  282 RVIAEMGGKDAIVVDKDIDTDLAAESIVSSAFGFSGQKCSACSRAIVHKDVYDEVLEKAVALTKNLTVGN-TENNTYMGPVINQKQFDKIKNYIE-IGSKEGKLKQGGGTDDATGYFVEPTIIANLKSSDQIMQEEIFGPVVGFVKGKDFEELLEIANDTDYGLTGAVITNNREN---WIEAVESYDVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAK 494          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_BACLD (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rocA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 60/211 (28.44%), Postives = 115/211 (54.50%), Query Frame = 3
Query:    9 LLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTI-VEISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQG 635
            + E+ G +          +LA +S+  +A G AGQ+C+   R ++HE +Y  VL +++++ +  K+G+P      +GP+    S       IE I  + G+++ GG   +S+G F++PTI  ++ P A +++EE+F PV+   K  +F+EA+++ N+   GL+ ++ T++ ++I +         G +  N    GA +G   FGG ++ G
Sbjct:  285 IAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIE-IGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINR--AKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSG 492          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_BACSU (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus subtilis GN=rocA PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 63/213 (29.58%), Postives = 115/213 (53.99%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTI-VEISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQG 635
            + + E+ G +           LA  S++++A G +GQ+C+   R +IH+ +Y  V+++ V + K + +G+P +  T +GP+    S     K IE  KS+ GK+L GG   +S+G F+QPTI  ++   A +++EE+F PV+ + K + F+  ++I N+   GL+ ++ T++  +I +         G +  N    GA +G   FGG  + G
Sbjct:  282 RVIAEMGGKDTVLVDKDADLDLAASSIVYSAFGYSGQKCSAGSRAVIHQDVYDEVVEKAVALTKTLTVGNPEDPDTYMGPVIHEASYNKVMKYIEIGKSE-GKLLAGGEGDDSKGYFIQPTIFADVDENARLMQEEIFGPVVAICKARDFDHMLEIANNTEYGLTGALLTKNRAHIER--AREDFHVGNLYFNRGCTGAIVGYQPFGGFNMSG 491          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: LADH_METM5 (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0090 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 69/234 (29.49%), Postives = 114/234 (48.72%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIVEISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIGGAFGGERLQG---EAVKQEVILGSIHATLDLHN 695
            K  LEL GNN          KLA +S + +    AGQ C +  ++L+ E + +T    +++  K++ +G+PL+  T +GPL +PES    E  I+   ++GG++LIGG+    + + + P ++ I     + K E F PVL ++K +  EEAV I N+   GL + +FT       K       + G + +N      +    FGG +  G   E +K  V       T+ +HN
Sbjct:  236 KVALELGGNNPMIVLKDSDIKLAAKSAVKSKFLNAGQVCISVGQVLVEEEVLETFTKHVIEETKKLILGNPLDTKTDIGPLISPESALRIENLIKKSVNEGGEVLIGGN---RQNSLISPAVINIDENNILSKIETFGPVLPILKVKDSEEAVSIANNSKYGLQAGVFTNDINKAMKI--ADSLEYGGIMINSSPTFRKDNMPFGGVKKSGLGREGIKYTVEEMCETKTIVIHN 464          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_OCEIH (1-pyrroline-5-carboxylate dehydrogenase OS=Oceanobacillus iheyensis GN=rocA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.211e-22
Identity = 54/178 (30.34%), Postives = 104/178 (58.43%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIK--SQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENI 527
            + + E+ G +           LA  S++ +A G +GQ+C+ C R +IHES+Y  V+++ V++ K + +G+P E    +  +    ++K F+K  + I+   Q G+++ GG   +++G FV PTI  ++ P A I++EE+F PV+   K ++F+E + I N+   GL+ ++ + + EN+
Sbjct:  282 RIVAEMGGKDTIIVDESADLDLAAESIVHSAFGFSGQKCSACSRAVIHESVYDEVIEKSVELAKTLTVGNPTEDNVYMASV---VNQKQFDKIKDYIEVGKQEGELVFGGETDDNKGFFVHPTIFKDLDPKARIMQEEIFGPVVAFSKAKSFDELLDIANNTEYGLTGAVISNNRENL 456          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: SSDH_ARATH (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=ALDH5F1 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 64/212 (30.19%), Postives = 105/212 (49.53%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIGGAFGGERLQG 635
            K  LEL GN            +AV+  L A    +GQ C    R+L+ + IY    +   +  +++++GD    GT  GPL    + +  E  +++  S+G KI+IGG        F +PT++ ++S    + KEE+F PV  +++F+T E+A++I N    GL++ IFT S +    W      + G+V VN      E+   FGG +  G
Sbjct:  293 KVSLELGGNAPSIVFDDADLDVAVKGTLAAKFRNSGQTCVCANRVLVQDGIYDKFAEAFSEAVQKLEVGDGFRDGTTQGPLINDAAVQKVETFVQDAVSKGAKIIIGGKRHSLGMTFYEPTVIRDVSDNMIMSKEEIFGPVAPLIRFKTEEDAIRIANDTIAGLAAYIFTNSVQR--SWRVFEALEYGLVGVNEGLISTEV-APFGGVKQSG 501          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_STAAW (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=rocA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 63/220 (28.64%), Postives = 122/220 (55.45%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIEN---IKSQGGKILIGGSVIESEGNFVQPTIVEISPTAD-IVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQGEAVK 647
            + + E+ G +           +A  +++ +A G +GQ+C+ C R ++H+ +Y  VL++ + + K++ +G+ ++  T +GP+    ++K F+K I+N   I  + GK+  GG   +S+G FV+PTI+    + D I++EE+F PV+  +K   F+EA+++ N    GL+ ++ T + E+  K +     D G + +N     A +G   FGG ++ G   K
Sbjct:  282 RVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVD-NTYMGPV---INKKQFDK-IKNYIEIGKEEGKLEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEF--DVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAK 494          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_STAAT (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rocA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 63/220 (28.64%), Postives = 122/220 (55.45%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIEN---IKSQGGKILIGGSVIESEGNFVQPTIVEISPTAD-IVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQGEAVK 647
            + + E+ G +           +A  +++ +A G +GQ+C+ C R ++H+ +Y  VL++ + + K++ +G+ ++  T +GP+    ++K F+K I+N   I  + GK+  GG   +S+G FV+PTI+    + D I++EE+F PV+  +K   F+EA+++ N    GL+ ++ T + E+  K +     D G + +N     A +G   FGG ++ G   K
Sbjct:  282 RVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVD-NTYMGPV---INKKQFDK-IKNYIEIGKEEGKLEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEF--DVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAK 494          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_STAAS (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=rocA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 63/220 (28.64%), Postives = 122/220 (55.45%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIEN---IKSQGGKILIGGSVIESEGNFVQPTIVEISPTAD-IVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQGEAVK 647
            + + E+ G +           +A  +++ +A G +GQ+C+ C R ++H+ +Y  VL++ + + K++ +G+ ++  T +GP+    ++K F+K I+N   I  + GK+  GG   +S+G FV+PTI+    + D I++EE+F PV+  +K   F+EA+++ N    GL+ ++ T + E+  K +     D G + +N     A +G   FGG ++ G   K
Sbjct:  282 RVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVD-NTYMGPV---INKKQFDK-IKNYIEIGKEEGKLEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEF--DVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAK 494          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_STAAR (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=rocA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 63/220 (28.64%), Postives = 122/220 (55.45%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIEN---IKSQGGKILIGGSVIESEGNFVQPTIVEISPTAD-IVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQGEAVK 647
            + + E+ G +           +A  +++ +A G +GQ+C+ C R ++H+ +Y  VL++ + + K++ +G+ ++  T +GP+    ++K F+K I+N   I  + GK+  GG   +S+G FV+PTI+    + D I++EE+F PV+  +K   F+EA+++ N    GL+ ++ T + E+  K +     D G + +N     A +G   FGG ++ G   K
Sbjct:  282 RVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVD-NTYMGPV---INKKQFDK-IKNYIEIGKEEGKLEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEF--DVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAK 494          
The following BLAST results are available for this feature:
BLAST of FC930146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ROCA_STAS12.161e-2230.281-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_BACLD2.161e-2228.441-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_BACSU6.287e-2229.581-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
LADH_METM56.287e-2229.49Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
ROCA_OCEIH8.211e-2230.341-pyrroline-5-carboxylate dehydrogenase OS=Oceanob... [more]
SSDH_ARATH1.072e-2130.19Succinate-semialdehyde dehydrogenase, mitochondria... [more]
ROCA_STAAW1.072e-2128.641-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAT1.072e-2128.641-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAS1.072e-2128.641-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAR1.072e-2128.641-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34004C07EF PostHarvC1 Citrus clementina cDNA clone C34004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930146 ID=FC930146; Name=FC930146; organism=Citrus clementina; type=EST; length=704bp
GTAAATGTTTACTTGAATTAAGTGGAAACAATGCTATTATTATTATGGAT
GATGCCGACATCAAACTAGCTGTTCGTTCTGTCCTATTTGCTGCTGTCGG
TACAGCTGGTCAGCGCTGCACAACTTGTCGTAGACTGCTTATTCACGAAA
GCATATACCAGACAGTGCTTGATCAACTAGTTGATGTGTACAAACAAGTT
AAGATAGGAGATCCATTAGAAAAAGGTACCTTGCTCGGGCCATTGCATAC
TCCTGAATCAAGGAAGAATTTCGAGAAAGGAATTGAGAACATCAAATCTC
AGGGAGGGAAGATCCTTATAGGTGGTTCTGTTATAGAGTCTGAGGGGAAC
TTTGTGCAGCCCACAATAGTTGAGATTAGTCCAACAGCTGACATTGTTAA
AGAAGAGTTGTTTGCTCCTGTCCTTTATGTTATGAAATTTCAGACCTTCG
AAGAAGCAGTTAAGATCAATAATTCAGTACCCCAGGGATTGAGTAGTTCT
ATTTTCACCCGCAGTCCTGAAAATATTTTCAAGTGGCTAGGGCCACATGG
AAGTGACACTGGTATTGTGAATGTAAATATACCTACAAATGGGGCTGAAA
TTGGTGGTGCTTTTGGTGGTGAAAGGCTACAGGGGGAGGCCGTGAAGCAG
GAAGTGATTCTTGGAAGCATACATGCGACGCTCGACTTGCACAATCACTA
TGGA
back to top