FC930146

Overview
NameFC930146
Unique NameFC930146
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930146_ssr35 microsatellite FC930146_ssr35:35..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14856 contig Ccv1_Contig14856:928..1631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: LADH_METM7 (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0731 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 70/234 (29.91%), Postives = 113/234 (48.29%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIVEISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIGGAFGGERLQG---EAVKQEVILGSIHATLDLHN 695
            K  LEL GNN          KLA +S + +    AGQ C +  ++L+ E + +T    ++D  K + +G+PL+  T +GPL +PES    E  I+   ++GG++LIGG+    + + + P ++ I     + K E F PVL ++K +  EEAV I N+   GL + +FT       K       + G + +N      +    FGG +  G   E +K  V       T+ +HN
Sbjct:  236 KVTLELGGNNPMIVLKDSDIKLAAKSAVKSKFLNAGQVCISVGQVLVEEEVLETFTKYIIDETKNLVLGNPLDTKTDIGPLISPESALRIENLIKESVNEGGELLIGGN---RQNSLIFPAVINIDEDNLLSKIETFGPVLPILKVKNSEEAVSIANNSKYGLQAGVFTNDINKAMKI--ADSLEYGGIMINSSPTFRKDNMPFGGVKKSGLGREGIKYTVEEMCETKTVVIHN 464          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: AL1A3_HUMAN (Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 67/212 (31.60%), Postives = 105/212 (49.53%), Query Frame = 3
Query:   12 LELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKS---QGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIGGAFGGERLQG 635
            LEL G N           LAV           GQ CT   R+ + E +Y   + + V+  K+  +GDP +  T  GP      +K F+K +E I+S   +G K+  GGS +E +G F++PT+  E++    I KEE+F PV  ++KF++ EE +K  NS   GL++++FT++ +   K      S T  +N     N       FGG ++ G
Sbjct:  279 LELGGKNPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRVFVEEQVYSEFVRRSVEYAKKRPVGDPFDVKTEQGP---QIDQKQFDKILELIESGKKEGAKLECGGSAMEDKGLFIKPTVFSEVTDNMRIAKEEIFGPVQPILKFKSIEEVIKRANSTDYGLTAAVFTKNLDKALKLASALESGTVWINC---YNALYAQAPFGGFKMSG 484          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: SSDH_ORYSJ (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica GN=ALDH5F1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21
Identity = 64/212 (30.19%), Postives = 104/212 (49.06%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIGGAFGGERLQG 635
            K  LEL GN            +A++  L A    +GQ C    R+L+ E IY+      +   + +K+G+ LE+ T  GPL    + +  EK I +  S+G  I++GG       +F +PT+V  +S    + +EE+F PV  ++ F+T E+A+++ N    GL++ IFT+S      W      + G+V VN      E+   FGG +  G
Sbjct:  294 KVSLELGGNAPCIVFDDADIDVAIKGSLAAKFRNSGQTCVCANRILVQEGIYEKFASAFIKAVQSLKVGNGLEESTSQGPLINEAAVQKVEKFINDATSKGANIMLGGKRHSLGMSFYEPTVVGNVSNDMLLFREEVFGPVAPLVPFKTEEDAIRMANDTNAGLAAYIFTKSIPR--SWRVSEALEYGLVGVNEGIISTEV-APFGGVKQSG 502          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_STAES (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rocA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21
Identity = 59/217 (27.19%), Postives = 116/217 (53.46%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIVEISPTAD-IVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQGEAVK 647
            + + E+ G +           LA  +++ +A G +GQ+C+ C R ++H+ ++  +L++ + + +++ +G+  E+ T +GP+   +     +  IE I  + GK+  GG   +S G F++PTI     +AD I++EE+F PV+  +K + F+EA+++ N    GL+ ++ T   E+  K +     D G + +N     A +G   FGG ++ G   K
Sbjct:  282 RVIAEMGGKDAIVVDNNVDTDLAAEAIVTSAFGFSGQKCSACSRAIVHQDVHDEILEKAIQLTQKLTLGN-TEENTFMGPVINQKQFDKIKNYIE-IGKKEGKLETGGGTDDSTGYFIEPTIFSGLQSADRIMQEEIFGPVVGFIKVKDFDEAIEVANDTDYGLTGAVITNHREHWIKAVNEF--DVGNLYLNRGCTAAVVGYHPFGGFKMSGTDAK 494          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ROCA_STAEQ (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rocA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21
Identity = 59/217 (27.19%), Postives = 116/217 (53.46%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIVEISPTAD-IVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIG-GAFGGERLQGEAVK 647
            + + E+ G +           LA  +++ +A G +GQ+C+ C R ++H+ ++  +L++ + + +++ +G+  E+ T +GP+   +     +  IE I  + GK+  GG   +S G F++PTI     +AD I++EE+F PV+  +K + F+EA+++ N    GL+ ++ T   E+  K +     D G + +N     A +G   FGG ++ G   K
Sbjct:  282 RVIAEMGGKDAIVVDNNVDTDLAAEAIVTSAFGFSGQKCSACSRAIVHQDVHDEILEKAIQLTQKLTLGN-TEENTFMGPVINQKQFDKIKNYIE-IGKKEGKLETGGGTDDSTGYFIEPTIFSGLQSADRIMQEEIFGPVVGFIKVKDFDEAIEVANDTDYGLTGAVITNHREHWIKAVNEF--DVGNLYLNRGCTAAVVGYHPFGGFKMSGTDAK 494          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: BADH1_ARATH (Betaine aldehyde dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=ALDH10A8 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 60/173 (34.68%), Postives = 93/173 (53.76%), Query Frame = 3
Query:   12 LELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIE--SEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPE 521
            +EL G +            A    LF    T GQ C+   RLL+HESI    +++LV   K +KI DP+E+G  LGP+ +    +   K I   KS+G  IL GGS  E   +G F++PTI+ +++ +  I +EE+F PVL V  F + +EA+++ N    GL +++ +   E
Sbjct:  259 MELGGKSPLIVFDDVDLDKAAEWALFGCFWTNGQICSATSRLLVHESIASEFIEKLVKWSKNIKISDPMEEGCRLGPVVSKGQYEKILKFISTAKSEGATILHGGSRPEHLEKGFFIEPTIITDVTTSMQIWREEVFGPVLCVKTFASEDEAIELANDSHYGLGAAVISNDTE 431          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ASTD_NOVAD (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=astD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 61/209 (29.19%), Postives = 105/209 (50.24%), Query Frame = 3
Query:   12 LELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEK-GTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIVEISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIGGAFGGERLQG 635
            LE+ GNN          + A   ++ +A  +AGQRCT  RRL+I  S++  V+D +  +  ++ +G P +     +GP+    +     +    + S GG+ +     ++ +  F+ P I++++  AD    ELF P+L V++   F+EA+   N+   GLS+S+    P++  ++        G+VN N PTNGA     FGG  L G
Sbjct:  229 LEMGGNNPIVVWDTPKIEDAATLIVQSAFTSAGQRCTAARRLIIKASMFDEVIDHVKRLADRIIVGAPFDDPAPFMGPVIDNRTADGLTESFVYLLSSGGRPIKHMVRLQEDRPFLSPAIIDVTAVADRPDVELFGPLLQVVRVDDFDEAIAEANNTRFGLSASLIGGDPQDYNRFWA--NIRAGVVNWNRPTNGASSAAPFGGVGLSG 435          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: AL1A3_RAT (Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 67/212 (31.60%), Postives = 103/212 (48.58%), Query Frame = 3
Query:   12 LELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKS---QGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIGGAFGGERLQG 635
            LEL G N           LAV           GQ CT   R+ + E +Y   + + V+  K+  +GDP +  T  GP      +K F+K +E I+S   +G K+  GGS +E  G F++PT+  +++    I KEE+F PV  ++KF+  EE +K  NS   GL++++FT++ +   K      S T  VN     N       FGG ++ G
Sbjct:  279 LELGGRNPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRVFVEEQVYGEFVRRSVEFAKKRPVGDPFDAKTEQGP---QIDQKQFDKILELIESGKKEGAKLECGGSAMEDRGLFIKPTVFSDVTDNMRIAKEEIFGPVQPILKFKNLEEVIKRANSTDYGLTAAVFTKNLDKALKLASALESGTVWVNC---YNAFYAQAPFGGFKMSG 484          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: BADH_AMAHP (Betaine aldehyde dehydrogenase, chloroplastic OS=Amaranthus hypochondriacus GN=BADH4 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 61/170 (35.88%), Postives = 90/170 (52.94%), Query Frame = 3
Query:   12 LELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIE--SEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTR 512
            LEL G +            A     F    T GQ C+   RLL+HESI    LD+LV   K +KI DP E+G  LGP+ +    +   K I   KS+G  IL GGS  E   +G +V+PTI+ ++S +  I +EE+F PVL    F + +EA+++ N    GL +++ ++
Sbjct:  259 LELGGKSPIVIFEDVDLDKAAEWTAFGCFWTNGQICSATSRLLVHESIAAEFLDRLVKWCKNIKISDPFEEGCRLGPVVSKSQYEKVLKFISTAKSEGATILCGGSRPEHLKKGYYVEPTIISDVSTSMQIWREEVFGPVLCQKTFGSEDEAIELANDTQYGLGAAVLSK 428          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 66/212 (31.13%), Postives = 103/212 (48.58%), Query Frame = 3
Query:   12 LELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKS---QGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIGGAFGGERLQG 635
            LEL G N           LAV           GQ CT   R+ + E +Y   + + V+  K+  +GDP +  T  GP      +K F+K +E I+S   +G K+  GGS +E  G F++PT+  +++    I KEE+F PV  ++KF+  EE +K  NS   GL++++FT++ +   K      S T  +N     N       FGG ++ G
Sbjct:  279 LELGGKNPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRVFVEEQVYGEFVRRSVEFAKKRPVGDPFDAKTEQGP---QIDQKQFDKILELIESGKKEGAKLECGGSAMEDRGLFIKPTVFSDVTDNMRIAKEEIFGPVQPILKFKNLEEVIKRANSTDYGLTAAVFTKNLDKALKLAAALESGTVWINC---YNAFYAQAPFGGFKMSG 484          
The following BLAST results are available for this feature:
BLAST of FC930146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LADH_METM71.072e-2129.91Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
AL1A3_HUMAN1.072e-2131.60Aldehyde dehydrogenase family 1 member A3 OS=Homo ... [more]
SSDH_ORYSJ4.075e-2130.19Succinate-semialdehyde dehydrogenase, mitochondria... [more]
ROCA_STAES4.075e-2127.191-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAEQ4.075e-2127.191-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
BADH1_ARATH5.322e-2134.68Betaine aldehyde dehydrogenase 1, chloroplastic OS... [more]
ASTD_NOVAD5.322e-2129.19N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
AL1A3_RAT5.322e-2131.60Aldehyde dehydrogenase family 1 member A3 OS=Rattu... [more]
BADH_AMAHP6.951e-2135.88Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
AL1A3_MOUSE6.951e-2131.13Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionC34004C07EF PostHarvC1 Citrus clementina cDNA clone C34004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930146 ID=FC930146; Name=FC930146; organism=Citrus clementina; type=EST; length=704bp
GTAAATGTTTACTTGAATTAAGTGGAAACAATGCTATTATTATTATGGAT
GATGCCGACATCAAACTAGCTGTTCGTTCTGTCCTATTTGCTGCTGTCGG
TACAGCTGGTCAGCGCTGCACAACTTGTCGTAGACTGCTTATTCACGAAA
GCATATACCAGACAGTGCTTGATCAACTAGTTGATGTGTACAAACAAGTT
AAGATAGGAGATCCATTAGAAAAAGGTACCTTGCTCGGGCCATTGCATAC
TCCTGAATCAAGGAAGAATTTCGAGAAAGGAATTGAGAACATCAAATCTC
AGGGAGGGAAGATCCTTATAGGTGGTTCTGTTATAGAGTCTGAGGGGAAC
TTTGTGCAGCCCACAATAGTTGAGATTAGTCCAACAGCTGACATTGTTAA
AGAAGAGTTGTTTGCTCCTGTCCTTTATGTTATGAAATTTCAGACCTTCG
AAGAAGCAGTTAAGATCAATAATTCAGTACCCCAGGGATTGAGTAGTTCT
ATTTTCACCCGCAGTCCTGAAAATATTTTCAAGTGGCTAGGGCCACATGG
AAGTGACACTGGTATTGTGAATGTAAATATACCTACAAATGGGGCTGAAA
TTGGTGGTGCTTTTGGTGGTGAAAGGCTACAGGGGGAGGCCGTGAAGCAG
GAAGTGATTCTTGGAAGCATACATGCGACGCTCGACTTGCACAATCACTA
TGGA
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