FC930146

Overview
NameFC930146
Unique NameFC930146
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: GABD1_MYCPA (Succinate-semialdehyde dehydrogenase [NADP+] OS=Mycobacterium paratuberculosis GN=gabD1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 58/210 (27.62%), Postives = 103/210 (49.05%), Query Frame = 3
Query:    9 LLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIGGAFGGERLQG 635
            +LEL G++            AV++ + A V   GQ C   +R ++H  IY   +D+ V+  K +K+GDP +  T +GPL T   R    K +++  + G  +  GG  ++  G F  PT+V +I+    +  EE+F PV  + +    +EA++I N+   GL S+ +T       +++    +    +N  +  +  E+G  FGG +  G
Sbjct:  230 VLELGGSDPFIVMPSADLDEAVKTAVTARVQNNGQSCIAAKRFIVHTDIYDAFVDKFVEQMKALKVGDPTDPATDVGPLATESGRDEIAKQVDDAVAAGATLRCGGKPLDGPGWFYPPTVVTDITKDMALYTEEVFGPVASMYRAADIDEAIEIANATTFGLGSNAWTNDAAEQQRFIDDIEAGQVFIN-GMTVSYPELG--FGGVKRSG 436          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: MMSA_MOUSE (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Mus musculus GN=Aldh6a1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 63/171 (36.84%), Postives = 95/171 (55.56%), Query Frame = 3
Query:   90 AAVGTAGQRCTTCRR-LLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIE----SEGNFVQPTIVE-ISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIP 584
            AA G AGQRC      +L+ E+  +  L +LVD  K +++    + G  LGPL TP++++     I++   +G  IL+ G  I+      GNFV PTI+  + P+    KEE+F PVL V++ +T +EA+KI N  P G  ++IFT +     K+   H  D G V VN+P
Sbjct:  308 AAFGAAGQRCMALSTAILVGEA--KKWLPELVDRAKNLRVNAGDQPGADLGPLITPQAKERVCNLIDSGTKEGASILLDGRRIKVKGYENGNFVGPTIISNVKPSMTCYKEEIFGPVLVVLETETLDEAIKIVNDNPYGNGTAIFTTNGATARKY--AHMVDVGQVGVNVP 474          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: GABD_ECOLI (Succinate-semialdehyde dehydrogenase [NADP+] OS=Escherichia coli (strain K12) GN=gabD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 61/212 (28.77%), Postives = 98/212 (46.23%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTI-VEISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNIPTNGAEIGGAFGGERLQG 635
            K  LEL GN             AV   L +    AGQ C    RL + + +Y    ++L     ++ IGD L+ G  +GPL   ++    E+ I +   +G +++ GG   E  GNF QPTI V++   A + KEE F P+  + +F+   + +   N    GL++  + R    +F+ +G    + GIV +N      E+   FGG +  G
Sbjct:  251 KVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAVSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFR-VG-EALEYGIVGINTGIISNEV-APFGGIKASG 459          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: YNEI_ECOLI (Aldehyde dehydrogenase-like protein yneI OS=Escherichia coli (strain K12) GN=yneI PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.981e-19
Identity = 50/170 (29.41%), Postives = 87/170 (51.18%), Query Frame = 3
Query:    3 KCLLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFT 509
            KC+LEL G++          +LAV++ +       GQ C   +R +I E I     ++ V     +K+GDP ++   LGP+   + R      +E   +QG ++L+GG  +   GN+  PT++  ++P     +EE+F PV  +   +  E A+++ N    GLS++IFT
Sbjct:  230 KCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIIEEGIASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHHQVEKTLAQGARLLLGGEKMAGAGNYYPPTVLANVTPEMTAFREEMFGPVAAITIAKDAEHALELANDSEFGLSATIFT 399          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: ASTD_HAHCH (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Hahella chejuensis (strain KCTC 2396) GN=astD PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.981e-19
Identity = 60/211 (28.44%), Postives = 106/211 (50.24%), Query Frame = 3
Query:   12 LELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIY-QTVLDQLVDVYKQVKIGD-PLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIVEISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFK-WLGPHGSDTGIVNVNIPTNGAEIGGAFGGERLQG 635
            LE+ GNN          K AV   LF+A  +AGQRCT  RRLL+ ++   Q  LD+L+     +++G    +    +G + +  +R         + ++GG+IL+    +E   + + P +++++   ++  EE F P+L V++++ F+ A+++ N    GL++ + + S +   + WL       GIVN N P  GA     FGG    G
Sbjct:  246 LEMGGNNPLIIAPPYDLKGAVHHTLFSAFVSAGQRCTCARRLLVPDTAEGQAFLDELIAAAANLQVGRYDADPQPFMGGVISLRARDQMLAAQNKLAAEGGRILLEMRSLEENASLLSPGVIDVTDVQELPDEEHFGPMLQVLRYRDFDHALELANKTGFGLAAGLISDSRDLYDRFWLEVR---AGIVNWNKPLTGASSAAPFGGVGASG 453          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: IOLA_LISMH (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=iolA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 61/172 (35.47%), Postives = 95/172 (55.23%), Query Frame = 3
Query:   72 VRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIE-SEGNFVQPTIVE-ISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTRSPENIFKWLGPHGSDTGIVNVNI 581
            V +V+ AA G+AG+RC  C  + + E I    L+ L    K VKIG+ L+ G  LGP+   E++K     IE    +G K+ + G     SEG+FV PTI+E ++    I K+E+FAPVL V++ +  +EAV++ N       + IFT + + I  +      D G++ VN+
Sbjct:  269 VTNVISAAFGSAGERCMACAVVTVEEDIADEFLEALRTAAKNVKIGNGLDDGVFLGPVIREENQKRTIAYIEKGVEEGAKLTVDGRETGLSEGHFVGPTILEDVTTDMTIWKDEIFAPVLSVIRVKNLQEAVRVANLSEFANGACIFTNNAKAIRYF--REKIDAGMLGVNL 438          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: GABD1_MYCTU (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium tuberculosis GN=gabD1 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 53/169 (31.36%), Postives = 85/169 (50.30%), Query Frame = 3
Query:    9 LLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTR 512
            +LEL G++            AV + +   V   GQ C   +R ++H  IY   +D+ V     +++GDP +  T +GPL T + R    K +E+  + G  I  GG  ++  G F  PT++ +IS    +  EE+F PV  V +    +EAV+I N+   GL S+ +TR
Sbjct:  229 VLELGGSDPFIVMPSADLDAAVSTAVTGRVQNNGQSCIAAKRFIVHADIYDDFVDKFVARMAALRVGDPTDPDTDVGPLATEQGRNEVAKQVEDAAAAGAVIRCGGKRLDRPGWFYPPTVITDISKDMALYTEEVFGPVASVFRAANIDEAVEIANATTFGLGSNAWTR 397          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: GABD1_MYCTA (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=gabD1 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 53/169 (31.36%), Postives = 85/169 (50.30%), Query Frame = 3
Query:    9 LLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTR 512
            +LEL G++            AV + +   V   GQ C   +R ++H  IY   +D+ V     +++GDP +  T +GPL T + R    K +E+  + G  I  GG  ++  G F  PT++ +IS    +  EE+F PV  V +    +EAV+I N+   GL S+ +TR
Sbjct:  229 VLELGGSDPFIVMPSADLDAAVSTAVTGRVQNNGQSCIAAKRFIVHADIYDDFVDKFVARMAALRVGDPTDPDTDVGPLATEQGRNEVAKQVEDAAAAGAVIRCGGKRLDRPGWFYPPTVITDISKDMALYTEEVFGPVASVFRAANIDEAVEIANATTFGLGSNAWTR 397          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: GABD1_MYCBP (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=gabD1 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 53/169 (31.36%), Postives = 85/169 (50.30%), Query Frame = 3
Query:    9 LLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTR 512
            +LEL G++            AV + +   V   GQ C   +R ++H  IY   +D+ V     +++GDP +  T +GPL T + R    K +E+  + G  I  GG  ++  G F  PT++ +IS    +  EE+F PV  V +    +EAV+I N+   GL S+ +TR
Sbjct:  229 VLELGGSDPFIVMPSADLDAAVSTAVTGRVQNNGQSCIAAKRFIVHADIYDDFVDKFVARMAALRVGDPTDPDTDVGPLATEQGRNEVAKQVEDAAAAGAVIRCGGKRLDRPGWFYPPTVITDISKDMALYTEEVFGPVASVFRAANIDEAVEIANATTFGLGSNAWTR 397          
BLAST of FC930146 vs. ExPASy Swiss-Prot
Match: GABD1_MYCBO (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium bovis GN=gabD1 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 53/169 (31.36%), Postives = 85/169 (50.30%), Query Frame = 3
Query:    9 LLELSGNNXXXXXXXXXXKLAVRSVLFAAVGTAGQRCTTCRRLLIHESIYQTVLDQLVDVYKQVKIGDPLEKGTLLGPLHTPESRKNFEKGIENIKSQGGKILIGGSVIESEGNFVQPTIV-EISPTADIVKEELFAPVLYVMKFQTFEEAVKINNSVPQGLSSSIFTR 512
            +LEL G++            AV + +   V   GQ C   +R ++H  IY   +D+ V     +++GDP +  T +GPL T + R    K +E+  + G  I  GG  ++  G F  PT++ +IS    +  EE+F PV  V +    +EAV+I N+   GL S+ +TR
Sbjct:  229 VLELGGSDPFIVMPSADLDAAVSTAVTGRVQNNGQSCIAAKRFIVHADIYDDFVDKFVARMAALRVGDPTDPDTDVGPLATEQGRNEVAKQVEDAAAAGAVIRCGGKRLDRPGWFYPPTVITDISKDMALYTEEVFGPVASVFRAANIDEAVEIANATTFGLGSNAWTR 397          
The following BLAST results are available for this feature:
BLAST of FC930146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GABD1_MYCPA1.712e-1927.62Succinate-semialdehyde dehydrogenase [NADP+] OS=My... [more]
MMSA_MOUSE3.814e-1936.84Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
GABD_ECOLI3.814e-1928.77Succinate-semialdehyde dehydrogenase [NADP+] OS=Es... [more]
YNEI_ECOLI4.981e-1929.41Aldehyde dehydrogenase-like protein yneI OS=Escher... [more]
ASTD_HAHCH4.981e-1928.44N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
IOLA_LISMH6.506e-1935.47Methylmalonate semialdehyde dehydrogenase [acylati... [more]
GABD1_MYCTU6.506e-1931.36Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
GABD1_MYCTA6.506e-1931.36Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
GABD1_MYCBP6.506e-1931.36Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
GABD1_MYCBO6.506e-1931.36Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34004C07EF PostHarvC1 Citrus clementina cDNA clone C34004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930146 ID=FC930146; Name=FC930146; organism=Citrus clementina; type=EST; length=704bp
GTAAATGTTTACTTGAATTAAGTGGAAACAATGCTATTATTATTATGGAT
GATGCCGACATCAAACTAGCTGTTCGTTCTGTCCTATTTGCTGCTGTCGG
TACAGCTGGTCAGCGCTGCACAACTTGTCGTAGACTGCTTATTCACGAAA
GCATATACCAGACAGTGCTTGATCAACTAGTTGATGTGTACAAACAAGTT
AAGATAGGAGATCCATTAGAAAAAGGTACCTTGCTCGGGCCATTGCATAC
TCCTGAATCAAGGAAGAATTTCGAGAAAGGAATTGAGAACATCAAATCTC
AGGGAGGGAAGATCCTTATAGGTGGTTCTGTTATAGAGTCTGAGGGGAAC
TTTGTGCAGCCCACAATAGTTGAGATTAGTCCAACAGCTGACATTGTTAA
AGAAGAGTTGTTTGCTCCTGTCCTTTATGTTATGAAATTTCAGACCTTCG
AAGAAGCAGTTAAGATCAATAATTCAGTACCCCAGGGATTGAGTAGTTCT
ATTTTCACCCGCAGTCCTGAAAATATTTTCAAGTGGCTAGGGCCACATGG
AAGTGACACTGGTATTGTGAATGTAAATATACCTACAAATGGGGCTGAAA
TTGGTGGTGCTTTTGGTGGTGAAAGGCTACAGGGGGAGGCCGTGAAGCAG
GAAGTGATTCTTGGAAGCATACATGCGACGCTCGACTTGCACAATCACTA
TGGA
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