FC930150

Overview
NameFC930150
Unique NameFC930150
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length810
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   31 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 249
            F IF GDL  EV D  L   FS +PS   A+V+ D++TG+++G+GFVSF++  D   A+ ++ GK++GSR I+
Sbjct:  381 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK 453          
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   31 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 249
            F IF GDL  EV D  L   FS +PS   A+V+ D++TG+++G+GFVSF++  D   A+ ++ GK++GSR I+
Sbjct:  349 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK 421          
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11
Identity = 64/219 (29.22%), Postives = 94/219 (42.92%), Query Frame = 1
Query:    7 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPGTKF 651
            + +  S    +FVG+L   V  A L   F    +     V++D+ TGRSRGFGFV+  +  + ++A     G  L  R +R N     AG    K+          + GSS  G          +      VYVGNL+  V  + L   F   G  V   V   RD    KGFGFV Y +  E   AI+   +   + L G+Q++ S  ++  PP  ++
Sbjct:   83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN-----AGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSG---NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK---SLDGADLDGRQIRVS-EAEARPPRRQY 289          
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11
Identity = 66/243 (27.16%), Postives = 97/243 (39.92%), Query Frame = 1
Query:   25 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK-------GAGN----NEDK---------------------------------------QSSDAKSVVELTNGSSEDGKET--------TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG---AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 570
            G+ +++VGDL   VTD+ LF  F    +    RV  D  T RS G+G+V+F N QDA  AI +L    L  + IR  ++ +       GAGN    N D+                                           A+  +E  NG   + K+            ++  N  ++T VYV NLA   T  DL   F   G   + V+ +    + KGFGFV +    +AA A++  N
Sbjct:   34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276          
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.669e-11
Identity = 58/203 (28.57%), Postives = 95/203 (46.80%), Query Frame = 1
Query:   16 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHS-----LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 609
            D  G   ++VG++   + +  L      + +   A VM+D+ +GRSR FGFV+ +  +DA + I  L    +G R+I+ N   K                +E  + ++   +++   E+P        VY+GNLA  VT  +L + F S     LGA V       +  GFGFV +S+  E   AIQ  N   +S L G++++
Sbjct:   79 DGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEK---------------PLEGMDIATTQAEDSQFVESPYK------VYIGNLAKTVTN-ELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALN---NSVLEGQKIR 256          
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 55/187 (29.41%), Postives = 77/187 (41.18%), Query Frame = 1
Query:   22 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGN 570
            S    +FVG+L   V  A L   F    +     V++D+ +GRSRGFGFV+   +++ ++A     G  +  R IR N A       E+      +       G  +            +      VYVGNL+  V  L L   F   G  V  +V   RD    +GFGFV YS+  E   AI   N
Sbjct:   85 SEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN-AGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLN 270          
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 53/199 (26.63%), Postives = 79/199 (39.70%), Query Frame = 1
Query:    4 GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK-------GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGN 570
            G +ED   + +++VG+L P VT+A LF  F+     +  RV  D  T RS G+ +V+F NQ D   A+ +L    +  R  R  W+ +       GAGN                                        +Y+ NL P +    LH  F + G  +  ++        +GFGFV Y +   A  AIQ  N
Sbjct:   37 GSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGN----------------------------------------IYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVN 195          
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.718e-11
Identity = 58/189 (30.69%), Postives = 84/189 (44.44%), Query Frame = 1
Query:    7 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQ 561
            +  + S    IFVG+L      A L   F    +     V++D+ TGRSRGFGFV+  ++++ ++A     G  L  R +R N     +G   +K+ + +        G S  G    ++           VYVGNLA  V Q  L   F   G  V  +V   RD    +GFGFV YS+  E   AI+
Sbjct:   79 EERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-----SGPPPEKRENSS------FRGGSRGGGSFDSS---------NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 247          
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 50/177 (28.25%), Postives = 81/177 (45.76%), Query Frame = 1
Query:   34 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 558
            N+++ +   ++ D  L   F  +      +VM D+ +G+S+GFGFVSF   +DAQ A++++ GK L  +QI    A K      + +             + E  K+   T       Q   +YV NL   +    L + F   G     +V ++  R KGFGFV +S+  EA  A+
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR------------TFEQMKQDRITRY-----QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350          
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 52/177 (29.38%), Postives = 82/177 (46.33%), Query Frame = 1
Query:   34 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 558
            N+++ +   ++ D  L   FS + +    +VM D  TGRSRGFGFV++ N ++AQ A++++ GK +  R I    A K      ++Q        EL     +  +E        N  Q   +YV NL   +    L + F   G     +V  +    KGFGFV +S+  EA  A+
Sbjct:  192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK----RIERQG-------ELKRKFEQIKQERI------NRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350          
The following BLAST results are available for this feature:
BLAST of FC930150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RBM42_HUMAN9.785e-1245.21RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE... [more]
RBM42_BOVIN9.785e-1245.21RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2... [more]
ROC1_ARATH1.278e-1129.22Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
PABP2_ARATH1.278e-1127.16Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
RRP2_SPIOL1.669e-1128.5730S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
ROC2_NICPL2.847e-1129.4131 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
PABP_YARLI2.847e-1126.63Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ROC1_NICSY3.718e-1130.6929 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
PABP3_HUMAN8.284e-1128.25Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
EPAB_XENTR8.284e-1129.38Embryonic polyadenylate-binding protein OS=Xenopus... [more]

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Properties
Property NameValue
Genbank descriptionC34004C11EF PostHarvC1 Citrus clementina cDNA clone C34004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930150 ID=FC930150; Name=FC930150; organism=Citrus clementina; type=EST; length=810bp
AGTGGTCAGAGGGAAGATACATCAGGTCATTTTAACATTTTTGTTGGTGA
TCTGAGCCCAGAAGTTACTGATGCTACGTTGTTTGCGTGCTTTTCTGTTT
ATCCCAGTTGTTCGGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGT
TCTAGAGGCTTTGGCTTTGTTTCTTTCCGGAACCAGCAGGATGCCCAAAG
TGCGATAAACGATCTAACTGGAAAGTGGCTAGGCAGTAGACAGATACGTT
GTAACTGGGCAACAAAAGGTGCTGGAAACAATGAGGACAAACAGAGCTCT
GATGCTAAAAGTGTGGTAGAACTAACAAATGGCTCTTCAGAAGATGGTAA
AGAGACCACAAATACTGAGGCCCCTGAGAACAATCCCCAATATACTACAG
TTTATGTGGGCAATCTGGCTCCGGAGGTCACTCAGCTCGATCTCCATCGC
CACTTCCATTCTCTTGGTGCTGGAGTGATTGAAGAGGTCCGAGTCCAGCG
AGATAAAGGCTTTGGTTTTGTTAGATACAGTACTCATGCTGAGGCAGCTC
TGGCTATTCAGATGGGCAATACCACCCAGTCATCATATCTCTTTGGCAAG
CAGATGAAGTGTTCTTGGGGCAGCAAGCCCACCCCGCCAGGGACAAAGTT
CAATCCACTTCCCCCACCTGCAGCTGCACCTATACCGGGCCTTTCAGCTG
CTGACCTTTTAGCTATGAGCGACAATAGCATGAGCAGATGGGTGTGTCAT
GCGCTATGCACCACAGCACACACCACTTAGCAGCAGCATGGAGTGGTCTG
CTGACAGCAG
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