FC930150
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12 Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 31 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 249 F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+ ++ GK++GSR I+ Sbjct: 381 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK 453
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12 Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 31 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 249 F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+ ++ GK++GSR I+ Sbjct: 349 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK 421
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11 Identity = 64/219 (29.22%), Postives = 94/219 (42.92%), Query Frame = 1 Query: 7 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPGTKF 651 + + S +FVG+L V A L F + V++D+ TGRSRGFGFV+ + + ++A G L R +R N AG K+ + GSS G + VYVGNL+ V + L F G V V RD KGFGFV Y + E AI+ + + L G+Q++ S ++ PP ++ Sbjct: 83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN-----AGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSG---NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK---SLDGADLDGRQIRVS-EAEARPPRRQY 289
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11 Identity = 66/243 (27.16%), Postives = 97/243 (39.92%), Query Frame = 1 Query: 25 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK-------GAGN----NEDK---------------------------------------QSSDAKSVVELTNGSSEDGKET--------TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG---AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 570 G+ +++VGDL VTD+ LF F + RV D T RS G+G+V+F N QDA AI +L L + IR ++ + GAGN N D+ A+ +E NG + K+ ++ N ++T VYV NLA T DL F G + V+ + + KGFGFV + +AA A++ N Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.669e-11 Identity = 58/203 (28.57%), Postives = 95/203 (46.80%), Query Frame = 1 Query: 16 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHS-----LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 609 D G ++VG++ + + L + + A VM+D+ +GRSR FGFV+ + +DA + I L +G R+I+ N K +E + ++ +++ E+P VY+GNLA VT +L + F S LGA V + GFGFV +S+ E AIQ N +S L G++++ Sbjct: 79 DGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEK---------------PLEGMDIATTQAEDSQFVESPYK------VYIGNLAKTVTN-ELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALN---NSVLEGQKIR 256
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11 Identity = 55/187 (29.41%), Postives = 77/187 (41.18%), Query Frame = 1 Query: 22 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGN 570 S +FVG+L V A L F + V++D+ +GRSRGFGFV+ +++ ++A G + R IR N A E+ + G + + VYVGNL+ V L L F G V +V RD +GFGFV YS+ E AI N Sbjct: 85 SEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN-AGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLN 270
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11 Identity = 53/199 (26.63%), Postives = 79/199 (39.70%), Query Frame = 1 Query: 4 GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK-------GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGN 570 G +ED + +++VG+L P VT+A LF F+ + RV D T RS G+ +V+F NQ D A+ +L + R R W+ + GAGN +Y+ NL P + LH F + G + ++ +GFGFV Y + A AIQ N Sbjct: 37 GSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGN----------------------------------------IYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVN 195
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.718e-11 Identity = 58/189 (30.69%), Postives = 84/189 (44.44%), Query Frame = 1 Query: 7 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQ 561 + + S IFVG+L A L F + V++D+ TGRSRGFGFV+ ++++ ++A G L R +R N +G +K+ + + G S G ++ VYVGNLA V Q L F G V +V RD +GFGFV YS+ E AI+ Sbjct: 79 EERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-----SGPPPEKRENSS------FRGGSRGGGSFDSS---------NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 247
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11 Identity = 50/177 (28.25%), Postives = 81/177 (45.76%), Query Frame = 1 Query: 34 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 558 N+++ + ++ D L F + +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K + + + E K+ T Q +YV NL + L + F G +V ++ R KGFGFV +S+ EA A+ Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR------------TFEQMKQDRITRY-----QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
BLAST of FC930150 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11 Identity = 52/177 (29.38%), Postives = 82/177 (46.33%), Query Frame = 1 Query: 34 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 558 N+++ + ++ D L FS + + +VM D TGRSRGFGFV++ N ++AQ A++++ GK + R I A K ++Q EL + +E N Q +YV NL + L + F G +V + KGFGFV +S+ EA A+ Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK----RIERQG-------ELKRKFEQIKQERI------NRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350 The following BLAST results are available for this feature:
BLAST of FC930150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930150 ID=FC930150; Name=FC930150; organism=Citrus clementina; type=EST; length=810bpback to top |