FC930151

Overview
NameFC930151
Unique NameFC930151
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPD_RAT (ATP synthase subunit delta, mitochondrial OS=Rattus norvegicus GN=Atp5d PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.077e-17
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 2
Query:  152 PTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 559
            P + P +++  F  P         V  V VP  TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++A+S   ++A E V +D +D    +  L +   +LS A  +  +AE QI ++ + AL  AL
Sbjct:   31 PAAGPGQMSFTFASPTQVFFDGANVRQVDVPTLTGAFGILASHVPTLQVLRPGLVMVHAEDGTTTKYFVSSGSVTVNADSSVQLLAEEVVTLDMLDLGAARANLEKAQSELSGAADEAARAEIQIRIEANEALVKAL 167          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPD_HUMAN (ATP synthase subunit delta, mitochondrial OS=Homo sapiens GN=ATP5D PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.887e-16
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  164 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 559
            P++++  F  P     +   V  V VP  TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++A+S   ++A EAV +D +D    +  L +   +L     +  +AE QI ++ + AL  AL
Sbjct:   35 PNQMSFTFASPTQVFFNGANVRQVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKAL 167          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPD_NEUCR (ATP synthase subunit delta, mitochondrial OS=Neurospora crassa GN=atp-16 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.688e-16
Identity = 44/135 (32.59%), Postives = 78/135 (57.78%), Query Frame = 2
Query:  158 SIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV-HDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 559
            ++  K+ ++  LP+ +   +++V  V +PA +G+MGVL  HVP+I +LKPG++ V  +    K+YF+S GFA +   S   I AVE   ++      V+  +AE  + +S   +  + AEAQ+ ++V  +L + L
Sbjct:   30 AVADKIKLSLSLPHQAIYKSQDVVQVNIPAVSGEMGVLANHVPSIEQLKPGLVEVIEESGSNKQYFLSGGFAVVQPGSKLSINAVEGYALEDFSAEAVRAQIAEAQKIVSGGGSQQDIAEAQVELEVLESLQAVL 164          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPD_CAEEL (ATP synthase subunit delta, mitochondrial OS=Caenorhabditis elegans GN=F58F12.1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.473e-14
Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  164 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT-KKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT 562
            P +L + F  P  +  S   V  V VP   G +GVL  HVPTI  LKPGV+SV     T ++ FVSSG   ++ +    ++A E + +++ID S  +  L +  Q+ S   +++ +AEAQI  +V  AL  A T
Sbjct:   28 PEELRLTFASPDTAVFSNAVVKQVDVPTLAGMVGVLANHVPTIGVLKPGVVSVTTNEGTVQRLFVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAEL-DAAQRASGEGSEVARAEAQIRAEVAEALIKAAT 160          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPD_SCHPO (ATP synthase subunit delta, mitochondrial OS=Schizosaccharomyces pombe GN=atp16 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.571e-13
Identity = 47/131 (35.88%), Postives = 70/131 (53.44%), Query Frame = 2
Query:  170 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTK-KYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 559
            KL ++  LPY +      V  V +PA  G+MG+L  HVP I  LKPGV+SV D +  K KYF+S GFA    ++   I   EA  ++    S+  + L +   +++S+   +  AEA + V V  +L  AL
Sbjct:   30 KLVLSMALPYQTIYEKVPVTQVDIPAEDGEMGILKDHVPMIQCLKPGVISVTDESSNKSKYFISGGFAVQQPSNELSITVPEAYKLEDFSSSVANQLLEKHKAEMNSSDEGV-AAEAAVRVSVLESLVRAL 159          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPE_OLTVI (ATP synthase epsilon chain, chloroplastic OS=Oltmannsiellopsis viridis GN=atpE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.735e-12
Identity = 40/100 (40.00%), Postives = 52/100 (52.00%), Query Frame = 2
Query:  218 KEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA 517
            KEVD +I+P +TGQMGVL  H P I  L  GV+ V    D +   V  GFA +  N +  ++  EA   + IDP   ++  A   Q L  AT   EK EA
Sbjct:   17 KEVDEIILPTNTGQMGVLSNHAPLITALDIGVMLVRTQKDWESVAVMGGFALVKQNQIT-VLVNEAESKETIDPQEAEEAFATAKQTLEQATGQKEKVEA 115          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPE_MAGSA (ATP synthase epsilon chain OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.796e-12
Identity = 38/117 (32.48%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  170 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGND-TKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA 517
            K+    V P A  L + +VDMV+VP + G  G L  H P I  ++PGV+ +HDG   +   FV+ GFA ++   +  ++A EA+P+ ++   + +       + L  A +D +KA A
Sbjct:    4 KIQFELVSP-AKLLVSSKVDMVVVPGAEGDFGALALHAPMITTVRPGVIDIHDGGKVSSSVFVAGGFAEVNEERIT-VLAEEAIPVGELTAEMAEARKKAAKEALDDAKSDRDKAHA 118          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPE_RHOCS (ATP synthase epsilon chain OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=atpC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 35/106 (33.02%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  209 LSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT---KKYFVSSGFAFIHANSVADIIAVEAVPIDQI---DPSLVQKGLAEFNQKLSSATTDLEK 508
            L ++ V MV+VP + G  GVLPGH P I  ++PG++ V+  N T   ++ FV+ GFA +  ++   ++A EA  +D +   D + ++K +++  + +  AT+D+E+
Sbjct:   16 LVSQPVAMVVVPGADGLFGVLPGHAPMIVTVRPGIIDVYGDNQTTVSRRIFVAGGFAEV-TDTRCTVLAEEASDLDALLKSDTAALEKQISDLREDIEDATSDVER 120          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPE_RHORU (ATP synthase epsilon chain OS=Rhodospirillum rubrum GN=atpC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11
Identity = 37/117 (31.62%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  209 LSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT-KKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSA 556
            L ++ V+MV+VP + G  G +P H P ++ ++PGV+S ++G    ++ FV+ GFA +       ++A EA  +  +    V+  L   + +L  AT++ EKAEA     +  AL +A
Sbjct:   16 LFSEPVEMVVVPGTDGDFGAMPRHAPLLSTVRPGVISTYNGGKVQRRIFVAGGFAEV-TEDRCTVLADEAFDLASLSEEAVRARLQAADDRLKEATSEAEKAEAAQAKAIAEALLAA 131          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPE_RHORT (ATP synthase epsilon chain OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11
Identity = 37/117 (31.62%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  209 LSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT-KKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSA 556
            L ++ V+MV+VP + G  G +P H P ++ ++PGV+S ++G    ++ FV+ GFA +       ++A EA  +  +    V+  L   + +L  AT++ EKAEA     +  AL +A
Sbjct:   16 LFSEPVEMVVVPGTDGDFGAMPRHAPLLSTVRPGVISTYNGGKVQRRIFVAGGFAEV-TEDRCTVLADEAFDLASLSEEAVRARLQAADDRLKEATSEAEKAEAAQAKAIAEALLAA 131          
The following BLAST results are available for this feature:
BLAST of FC930151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ATPD_RAT4.077e-1735.04ATP synthase subunit delta, mitochondrial OS=Rattu... [more]
ATPD_HUMAN5.887e-1634.59ATP synthase subunit delta, mitochondrial OS=Homo ... [more]
ATPD_NEUCR7.688e-1632.59ATP synthase subunit delta, mitochondrial OS=Neuro... [more]
ATPD_CAEEL2.473e-1436.57ATP synthase subunit delta, mitochondrial OS=Caeno... [more]
ATPD_SCHPO3.571e-1335.88ATP synthase subunit delta, mitochondrial OS=Schiz... [more]
ATPE_OLTVI6.735e-1240.00ATP synthase epsilon chain, chloroplastic OS=Oltma... [more]
ATPE_MAGSA8.796e-1232.48ATP synthase epsilon chain OS=Magnetospirillum mag... [more]
ATPE_RHOCS3.343e-1133.02ATP synthase epsilon chain OS=Rhodospirillum cente... [more]
ATPE_RHORU7.447e-1131.62ATP synthase epsilon chain OS=Rhodospirillum rubru... [more]
ATPE_RHORT7.447e-1131.62ATP synthase epsilon chain OS=Rhodospirillum rubru... [more]

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Properties
Property NameValue
Genbank descriptionC34004C12EF PostHarvC1 Citrus clementina cDNA clone C34004C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930151 ID=FC930151; Name=FC930151; organism=Citrus clementina; type=EST; length=573bp
CCAGCGCGGTGACAAGGTCTCGCGCCTTCTCATCGCAGGTCCCAGCCGCG
CCCGCCGTTGATTCGACTTTCGTTGAGTCATGGAAGAAAGTGAATCCAAA
CATGGAGCCGCCAAAGACTCCATCGGTTTACATGACCCTCGCCCACAAAC
CCCCACTTCAATCCCCTCCAAGCTCACCGTCAACTTCGTCCTTCCCTACG
CCTCTGAGCTCTCCGCTAAGGAGGTCGATATGGTTATAGTTCCAGCATCA
ACTGGGCAAATGGGTGTTCTGCCTGGACATGTACCTACAATTGCAGAACT
AAAGCCTGGAGTCTTATCGGTTCATGATGGGAATGATACCAAGAAATACT
TTGTTAGCAGTGGGTTTGCATTTATCCATGCAAACTCTGTTGCTGACATA
ATTGCTGTTGAGGCTGTGCCAATCGACCAAATTGACCCCAGCTTGGTCCA
GAAGGGCCTTGCAGAGTTCAACCAGAAGCTCAGTTCAGCTACAACTGACC
TGGAGAAAGCTGAAGCTCAGATAGGTGTTGATGTTCACAGTGCACTCAAC
TCTGCTCTCACAGCTAATTTCTC
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