FC930151

Overview
NameFC930151
Unique NameFC930151
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPE_MARMM (ATP synthase epsilon chain OS=Maricaulis maris (strain MCS10) GN=atpC PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 39/128 (30.47%), Postives = 68/128 (53.12%), Query Frame = 2
Query:  170 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNS 553
            KL  + V P    L A  VD V+VP   G  GVLP H P ++ ++PG ++V D     + F+  GFA + A  +  I+A EA+ +  ID   + + L++  + +++A  + E+ +A   V  + A+ +
Sbjct:    4 KLHFDLVSP-ERRLFAGNVDQVVVPGEEGDFGVLPNHAPFMSVIRPGAITVIDDGKETRTFIHGGFAEVTAAGLT-ILAEEAIAVADIDTEKLARDLSDAREDVTAAKDEEERDQAAALVAKYEAMQA 129          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPE_JANSC (ATP synthase epsilon chain OS=Jannaschia sp. (strain CCS1) GN=atpC PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 37/115 (32.17%), Postives = 63/115 (54.78%), Query Frame = 2
Query:  209 LSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNS 553
            L++ EV  V +P + G +  +P H P I  L+PGVL V      K YFV+ GFA I A   A I+A  A+P++++   +V++ +    ++ S+A+     A A+   D+   L++
Sbjct:   15 LASMEVTEVQIPGADGDLTAMPDHSPMITTLRPGVLKVSGAEGEKSYFVTGGFADI-AGPSATILAERAMPVEEVTGEIVEELIKASEEQKSAASDGAADAAAKYHADLTMTLDA 128          
The following BLAST results are available for this feature:
BLAST of FC930151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ATPE_MARMM9.726e-1130.47ATP synthase epsilon chain OS=Maricaulis maris (st... [more]
ATPE_JANSC9.726e-1132.17ATP synthase epsilon chain OS=Jannaschia sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionC34004C12EF PostHarvC1 Citrus clementina cDNA clone C34004C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930151 ID=FC930151; Name=FC930151; organism=Citrus clementina; type=EST; length=573bp
CCAGCGCGGTGACAAGGTCTCGCGCCTTCTCATCGCAGGTCCCAGCCGCG
CCCGCCGTTGATTCGACTTTCGTTGAGTCATGGAAGAAAGTGAATCCAAA
CATGGAGCCGCCAAAGACTCCATCGGTTTACATGACCCTCGCCCACAAAC
CCCCACTTCAATCCCCTCCAAGCTCACCGTCAACTTCGTCCTTCCCTACG
CCTCTGAGCTCTCCGCTAAGGAGGTCGATATGGTTATAGTTCCAGCATCA
ACTGGGCAAATGGGTGTTCTGCCTGGACATGTACCTACAATTGCAGAACT
AAAGCCTGGAGTCTTATCGGTTCATGATGGGAATGATACCAAGAAATACT
TTGTTAGCAGTGGGTTTGCATTTATCCATGCAAACTCTGTTGCTGACATA
ATTGCTGTTGAGGCTGTGCCAATCGACCAAATTGACCCCAGCTTGGTCCA
GAAGGGCCTTGCAGAGTTCAACCAGAAGCTCAGTTCAGCTACAACTGACC
TGGAGAAAGCTGAAGCTCAGATAGGTGTTGATGTTCACAGTGCACTCAAC
TCTGCTCTCACAGCTAATTTCTC
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