FC930156

Overview
NameFC930156
Unique NameFC930156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15109 contig Ccv1_Contig15109:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930156 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.767e-23
Identity = 60/151 (39.74%), Postives = 87/151 (57.62%), Query Frame = 1 
Query:  199 PILPNLSSSI-TSKKLGVNLVIGDVLNHESLVKAIKQ--VDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGKSKAVY 642
            P+ P+ +  I T +  G  ++ G + + E + K +K+  +DVVIS VG   L DQ+ ++ AIK    IKRF PSEFG+DVDR   VEP  + +  K  +RRAVE  GIP+T +  N  A++   +   P    PP D+  I GDG +KA +
Sbjct:   47 PVSPSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDRTDPVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYF 197

HSP 2 Score: 22.7126 bits (47), Expect = 5.767e-23
Identity = 8/15 (53.33%), Postives = 12/15 (80.00%), Query Frame = 3 
Query:  651 DDIGTYTIKAVDDPR 695
            +DIG +T+K +DD R
Sbjct:  201 NDIGKFTMKTIDDIR 215
The following BLAST results are available for this feature:
BLAST of FC930156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN5.767e-2339.74Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34004D05EF PostHarvC1 Citrus clementina cDNA clone C34004D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930156 ID=FC930156; Name=FC930156; organism=Citrus clementina; type=EST; length=695bp
GATCCATTTGATCATTTCAAACAAAACAGAAAAAAAAAGGAAAGAATCCC
CGAAATTGAACTGAATAATTCTCGGTAATGGCGTCGAAAAGCAAGATTCT
ATTCATCGGCGGTACAGGGTACATCGGCAAATTCATCGTCGAAGCGAGCG
CGAAAGCCGGCCACCCGACGTTCGTGCTCGTGAGAGAATCCACACTCTCC
GATCCTTCCAAATCTCAGCTCCTCGATCACTTCAAAAAAACTCGGCGTCA
ATCTCGTCATCGGAGATGTGTTGAATCACGAGAGCTTGGTGAAGGCGATA
AAACAAGTGGACGTGGTGATATCAACGGTCGGTCACACTTTATTAGGTGA
TCAGGTCAAGATTATTGCGGCCATTAAAGAAGCTGGTAACATTAAGAGAT
TCTTCCCTTCAGAATTTGGGAATGATGTTGATCGAGTCCATGCCGTTGAG
CCAGCAAAATCAGCATTTGCCACAAAGGCAAAAATCCGCCGAGCCGTTGA
GGCTGAAGGGATTCCGTATACTTATGTAGCGTCGAATTTCTTTGCTGCTT
ACTTCCTTCCCAATTTGTCGCAGCCCGGGGCCACTGCCCCACCTAGGGAT
AAAGTTGTCATCTTAGGCGATGGAAAATCCAAAGCTGTTTATAACAGGAA
GATGATATTGGAACCTATACTATCAAAGCGGTTGATGATCCCAGA
back to top