FC930160

Overview
NameFC930160
Unique NameFC930160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15110 contig Ccv1_Contig15110:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930160 vs. ExPASy Swiss-Prot
Match: DI194_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp. japonica GN=DI19-4 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 3 
Query:  336 EYPCPFCSEDFDLVGLCCHIDEEHPVEAKSGVCPVCVTRVTMDMVDHITTQHGNI--SNSWHKLKLHKGNSNSTISSLRKELQNAHFQSLL 602
            ++PCP+C ED D+  LC H+++EHP E+K   CPVC  R++ D++DHIT QH  +      H+L+     SN  +S   ++LQ  + + LL
Sbjct:   59 DFPCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSYLFRLQRHHRLRRVAVPSNHALSLGGRDLQETYLKVLL 149
The following BLAST results are available for this feature:
BLAST of FC930160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DI194_ORYSJ1.975e-1539.56Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionC34004D09EF PostHarvC1 Citrus clementina cDNA clone C34004D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930160 ID=FC930160; Name=FC930160; organism=Citrus clementina; type=EST; length=709bp
GAAACAGGTCCTTACGTTTCTTCCTCGAATTTCACTTCTTCTTTCGTTGC
TCCGCGTTAAAGCACGCGTTATTTATAAACTCAGTGAGCCAGTCAAGACT
CGAGCGCTTAAAATCAAAGGGGAAGTTTACTCGCTATTTTATGCTATCAT
CTGAATTGGGTTTTGTTTGTGAATTTTAATTAACAGAAGATTCAATGGAT
TACAGTAGATACTTTGGTCTTTCTACTTCATCATCAAGGAACTATCAGTC
AACTCTCAAGTCTCAGTTTGCGGATTTTTGCATTGATTTTGAGGATATAG
AAGAAGATGATTATGAGGAAGTGAAAGGAGAGTATGAGTATCCATGCCCA
TTTTGTTCGGAGGATTTTGATTTAGTTGGATTATGCTGTCATATTGATGA
GGAACATCCTGTTGAAGCAAAGTCGGGGGTATGCCCTGTTTGCGTTACAA
GGGTAACGATGGACATGGTTGATCACATAACAACACAACATGGAAACATT
TCAAATAGTTGGCACAAATTAAAACTTCATAAAGGCAACTCTAATTCAAC
TATATCATCTTTGAGGAAAGAGTTGCAAAATGCACATTTTCAATCTCTTC
TTGCAAGGTCATCCTCTTCTGTTTCTTCCTCCAAAAAGACATCTGATCCA
TGGCTATCATTTATTTACAACATGCCTACTGCTGACGAGTCTGAAGCATA
CAGCCTGCT
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