FC930164

Overview
NameFC930164
Unique NameFC930164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930164 vs. ExPASy Swiss-Prot
Match: BIM1_YEAST (Protein BIM1 OS=Saccharomyces cerevisiae GN=BIM1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.298e-24
Identity = 73/214 (34.11%), Postives = 109/214 (50.93%), Query Frame = 2
Query:  116 RNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYC-----DSVNGGIMNENYNPVERRCKGGKERSSRGSQKISKSLQTNNMHNAGSGDIGHKPRQAKIYGA------------------NSAQEVQALSKEITDLKLSVDLLEEERDFY 688
            R ELLTW+N  L L+  +IEE  +GA  CQ++D  Y G +PM++V F+A  EY+   NYK+LQ  F++  IEK + V+KL++ +  DNLEFLQWLK++      +SV        Y P+       K R+        +S  T    +A SG +  +     I G+                   S + + +L++EI   K +V  LE ER+FY
Sbjct:    9 RTELLTWLNGLLNLNYKKIEECGTGAAYCQIMDSIY-GDLPMNRVKFNATAEYEFQTNYKILQSCFSRHGIEKTVYVDKLIRCKFQDNLEFLQWLKKHWIRHKDESVYDPDARRKYRPIITNNSATKPRTVSNPTTAKRSSSTGT-GSAMSGGLATRHSSLGINGSRKTSVTQGQLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFY 220          
BLAST of FC930164 vs. ExPASy Swiss-Prot
Match: MAL3_SCHPO (Microtubule integrity protein mal3 OS=Schizosaccharomyces pombe GN=mal3 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.028e-21
Identity = 69/205 (33.66%), Postives = 106/205 (51.71%), Query Frame = 2
Query:  116 RNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKE-----RSSRGS------QKISKSLQTNNM--HNAGSGDIGHKPRQAKIYGANSA-QEVQALSKEITDLKLSVDLLEEERDFY 688
            R ELL WIN    L L+RIE+   G    Q+ D  Y  + P+ KVNF+   EY  I N+KVLQ VF K  I+K ++  +L + +  DNLEF+QW KR+ D    G    +Y+ + RR   G        SS G+      +++S    T +M   +A + ++      A +  A  A Q++ +L  ++ ++  ++  LE ERDFY
Sbjct:    5 RQELLAWINQVTSLGLTRIEDCGKGYAMIQIFDSIYQDI-PLKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFWDQYYPG---GDYDALARRGNRGPANTRVMNSSAGATGPSRRRQVSSGSSTPSMTKSSANNNNVSSTANTAAVLRAKQAQQQITSLETQLYEVNETMFGLERERDFY 205          
The following BLAST results are available for this feature:
BLAST of FC930164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
BIM1_YEAST1.298e-2434.11Protein BIM1 OS=Saccharomyces cerevisiae GN=BIM1 P... [more]
MAL3_SCHPO1.028e-2133.66Microtubule integrity protein mal3 OS=Schizosaccha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34004E01EF PostHarvC1 Citrus clementina cDNA clone C34004E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930164 ID=FC930164; Name=FC930164; organism=Citrus clementina; type=EST; length=689bp
GAAAAGGGCCGGTTGCCAGCTTTTTTCTCTACTGTCTTCTTTCGCTTTGA
AGAAACCGATTAAGAGAAAAATGGCAACCAACATTGGAATGATGGACAGT
GCGTATTTTGTTGGAAGAAATGAGCTATTGACTTGGATCAACAACAGGCT
TCAGCTTCATCTCTCTCGCATTGAAGAGGCTGCGTCCGGGGCAGTGCAGT
GTCAAATGTTGGACATGACCTACCCAGGAGTTGTTCCAATGCACAAGGTA
AATTTTGATGCGAAGACCGAATATGACATGATCCAAAATTACAAGGTCCT
GCAGGATGTATTTAACAAGTTGAAAATTGAGAAGCATATTGAAGTCAATA
AGCTTGTCAAAGGCCGACCTTTGGACAACTTAGAGTTCTTACAATGGCTG
AAACGTTACTGTGATTCTGTAAATGGTGGCATCATGAATGAGAACTACAA
TCCTGTGGAGCGTAGATGCAAGGGTGGGAAGGAACGGAGCTCCAGGGGTT
CTCAGAAGATTTCAAAATCACTGCAAACAAACAATATGCATAACGCTGGC
TCTGGTGACATTGGCCACAAGCCCAGGCAAGCAAAGATATATGGAGCTAA
CTCTGCACAAGAGGTTCAAGCATTGTCTAAGGAGATTACAGATCTCAAGC
TCTCTGTGGACCTTTTGGAAGAGGAGAGAGATTTTTACT
back to top