FC930169

Overview
NameFC930169
Unique NameFC930169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_BORA1 (Adenine phosphoribosyltransferase OS=Bordetella avium (strain 197N) GN=apt PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.859e-41
Identity = 79/159 (49.69%), Postives = 113/159 (71.07%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGE 701
            +   IR +PD+P PG+ F+DIT +L D + FR  +DLFV RY  + + +VAG++ARGFI G  +A  +   FVP+RK  KLP   ++EEYSLEYG   +E+H  AV+ G+R L+VDDL+ATGGT+ AAI+LL+R+G +VVE A +I+LP + G + + E
Sbjct:    9 VRRTIRSVPDWPVPGVTFRDITPVLQDPRTFRALVDLFVYRYMRQRLDLVAGVDARGFILGSVLAYELNLGFVPVRKKGKLPYRTVAEEYSLEYGNATVEIHTDAVRTGQRVLLVDDLIATGGTMVAAIKLLQRLGANVVEAAAIIDLPYIGGSQHIAE 167          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_SODGM (Adenine phosphoribosyltransferase OS=Sodalis glossinidius (strain morsitans) GN=apt PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.735e-41
Identity = 81/165 (49.09%), Postives = 120/165 (72.73%), Query Frame = 3
Query:  201 AQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            A + ++A I  +I+ +PD+PKPGI+F+D+T+LL +++A+  +I L  +R++D  ++ + G EARGF+FG P+ALA+G  FVP+RKP KLP E ISE Y LEYG D +E+H  A+  G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A VI L  L G ETL
Sbjct:    3 ATEQQLALIKQSIKSVPDYPKPGILFRDVTSLLENSRAYAASIALLADRFRDAGLTKIVGTEARGFLFGTPVALALGLGFVPVRKPGKLPRETISENYVLEYGTDGLEIHKDAIVPGDKVLVVDDLLATGGTICATVKLIRRLGGEVQDAAFVINLAYL-GGETL 166          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_RALME (Adenine phosphoribosyltransferase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=apt PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.735e-41
Identity = 80/153 (52.29%), Postives = 110/153 (71.90%), Query Frame = 3
Query:  237 IRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            IR +PD+P+PG+MF+DIT LL + K  R  ID+FV RY D+N+ +VAGI+ARGFI G  IA  +   FVP+RK  KLP + ++EEY LEYG   +E+H  A + G+R L++DDL+ATGGT+ A  +LLER+G  VVE   +++LPEL G + L
Sbjct:   22 IRTVPDWPQPGVMFRDITPLLQNPKTLRVLIDVFVHRYMDQNLDLVAGIDARGFILGSIIAYELNLGFVPIRKKGKLPFQTVAEEYELEYGSATVEIHADACKPGDRVLLIDDLIATGGTMMAGRKLLERLGATVVEGGAIVDLPELGGSKLL 174          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_PSEA6 (Adenine phosphoribosyltransferase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=apt PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.735e-41
Identity = 81/161 (50.31%), Postives = 112/161 (69.57%), Query Frame = 3
Query:  219 AGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGE 701
            A I S I+ +PD+PKPGI+F+D+T++L D KA+  +I+L V+ +   N   VAG EARGF+FG P+A+ +G  F+P+RKP KLP +VISE Y LEYG D +E+H  AV+ GE+ L++DDL+ATGGT+ A   L+ R+G  V     VI LP+L G   L E
Sbjct:    4 AYIKSVIKTVPDYPKPGILFRDVTSILEDHKAYTTSIELLVKEFAPYNFDKVAGTEARGFLFGAPLAIELGIGFIPVRKPNKLPRKVISESYDLEYGTDCLEIHEDAVKPGEKVLMLDDLLATGGTMIATANLIRRLGGIVEHAGFVISLPDLGGEAKLQE 164          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_CLOB8 (Adenine phosphoribosyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=apt PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.735e-41
Identity = 81/157 (51.59%), Postives = 111/157 (70.70%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            +   IRVI +FPK GI F+DITTL+ D +A R+TI+  V+  +DK I ++ G EARGFIFG P+A A+G  F+P+RKP KLPGE IS  Y LEYG+D +++H  A++ G+R  +VDDL+ATGGT+    +L+E+ G  V     VIEL ELKG++ L
Sbjct:    3 LQEKIRVIENFPKEGISFKDITTLIADGEALRETINRIVKHLEDKKIDLIVGPEARGFIFGVPVAYALGVGFIPVRKPGKLPGETISVNYGLEYGEDQLQLHKDAIKPGQRVAVVDDLLATGGTVEGVAKLIEQAGGIVASLDFVIELTELKGKDKL 159          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_CHLPB (Adenine phosphoribosyltransferase OS=Chlorobium phaeobacteroides (strain BS1) GN=apt PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.735e-41
Identity = 83/164 (50.61%), Postives = 112/164 (68.29%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNIS--VVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGEKHY 710
            I S IR IPD+PK GIMF+DITTLL D   FR  ID   + Y +  +   ++ G+EARGFI G  ++  +G  FVP+RKP KLPGEV+ +EY LEYG D +EMH+ A++ G R L+VDDL+ATGGT  A   L+E+VG  + E A ++ LP++ G++ L EK Y
Sbjct:    3 IKSRIRTIPDYPKKGIMFRDITTLLKDPVGFRLVIDQLSQHYIENGVDFDMIVGMEARGFIIGGALSYTLGKGFVPIRKPGKLPGEVVDQEYQLEYGTDKVEMHIDALEKGSRVLLVDDLLATGGTAMAGASLVEKVGGVIAEMAFIVNLPDIGGQKKLEEKGY 166          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_SHESM (Adenine phosphoribosyltransferase OS=Shewanella sp. (strain MR-4) GN=apt PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.878e-41
Identity = 77/157 (49.04%), Postives = 113/157 (71.97%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            I  +I+ IP++PK GI+F+D+T+LL +  A++ TIDL VE+Y++K  + + G EARGF+FG P+AL +G  FVP+RKP KLP   IS+ Y LEYG D +E+H  A+ A ++ L+VDDL+ATGGT+ A ++L+ ++G  V + A VI LP+L G   L
Sbjct:   11 IKQSIKTIPNYPKEGILFRDVTSLLENAAAYKATIDLLVEQYRNKGFTKIVGTEARGFLFGAPLALELGIGFVPVRKPGKLPRATISQSYELEYGHDSLEIHTDAITANDKVLVVDDLLATGGTIEATVKLIRQLGGEVQDAAFVISLPDLGGEARL 167          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_SHESA (Adenine phosphoribosyltransferase OS=Shewanella sp. (strain ANA-3) GN=apt PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.878e-41
Identity = 77/157 (49.04%), Postives = 113/157 (71.97%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            I  +I+ IP++PK GI+F+D+T+LL +  A++ TIDL VE+Y++K  + + G EARGF+FG P+AL +G  FVP+RKP KLP   IS+ Y LEYG D +E+H  A+ A ++ L+VDDL+ATGGT+ A ++L+ ++G  V + A VI LP+L G   L
Sbjct:   11 IKQSIKTIPNYPKEGILFRDVTSLLENAAAYKATIDLLVEQYRNKGFTKIVGTEARGFLFGAPLALELGIGFVPVRKPGKLPRATISQSYELEYGHDSLEIHTDAITANDKVLVVDDLLATGGTIEATVKLIRQLGGEVQDAAFVISLPDLGGEARL 167          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_RHOPB (Adenine phosphoribosyltransferase OS=Rhodopseudomonas palustris (strain BisB18) GN=apt PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.878e-41
Identity = 86/169 (50.89%), Postives = 115/169 (68.05%), Query Frame = 3
Query:  180 MASADVKAQDPRIA-GISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKG 683
            M+ A VK     IA  + +++R IPD+PKPGI+F+DITTLL D ++FR  ID  V+ +    I  VAGIEARGFI G  IA  + + FVP+RK  KLP   +S  Y+LEYG D++EMHV A++ GER ++VDDL+ATGGT   AI+LL + G  +V    +I+LPEL G
Sbjct:   11 MSVAAVKDLTMTIAYDLKASVRTIPDYPKPGILFRDITTLLGDARSFRCAIDELVQPWAGSKIDKVAGIEARGFIIGGAIAHQVSSGFVPIRKKGKLPHTTVSMSYALEYGSDIIEMHVDAIKPGERVILVDDLIATGGTAEGAIKLLRQTGAEIVAACFIIDLPELGG 179          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_PROA2 (Adenine phosphoribosyltransferase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=apt PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.878e-41
Identity = 83/164 (50.61%), Postives = 112/164 (68.29%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGEKHY 710
            I S IR IPD+PK GIMF+DITTLL D   FR  ID   + Y +   N  ++ G+EARGFI G  ++  +G  FVP+RKP KLPGE +++EY LEYG D +EMH+ A++ G R L+VDDL+ATGGT  A   L+E+VG  V + A ++ LP++ G++ L EK Y
Sbjct:    3 IKSRIRTIPDYPKKGIMFRDITTLLKDPVGFRLVIDQITQHYLENGINFDMIIGMEARGFIIGGALSYTLGKGFVPIRKPGKLPGETVNQEYQLEYGTDKVEMHIDALEKGTRVLLVDDLLATGGTALAGAALIEKVGGVVADMAFIVNLPDIGGQKKLEEKGY 166          
The following BLAST results are available for this feature:
BLAST of FC930169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_BORA12.859e-4149.69Adenine phosphoribosyltransferase OS=Bordetella av... [more]
APT_SODGM3.735e-4149.09Adenine phosphoribosyltransferase OS=Sodalis gloss... [more]
APT_RALME3.735e-4152.29Adenine phosphoribosyltransferase OS=Ralstonia met... [more]
APT_PSEA63.735e-4150.31Adenine phosphoribosyltransferase OS=Pseudoalterom... [more]
APT_CLOB83.735e-4151.59Adenine phosphoribosyltransferase OS=Clostridium b... [more]
APT_CHLPB3.735e-4150.61Adenine phosphoribosyltransferase OS=Chlorobium ph... [more]
APT_SHESM4.878e-4149.04Adenine phosphoribosyltransferase OS=Shewanella sp... [more]
APT_SHESA4.878e-4149.04Adenine phosphoribosyltransferase OS=Shewanella sp... [more]
APT_RHOPB4.878e-4150.89Adenine phosphoribosyltransferase OS=Rhodopseudomo... [more]
APT_PROA24.878e-4150.61Adenine phosphoribosyltransferase OS=Prosthecochlo... [more]

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Properties
Property NameValue
Genbank descriptionC34004E06EF PostHarvC1 Citrus clementina cDNA clone C34004E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930169 ID=FC930169; Name=FC930169; organism=Citrus clementina; type=EST; length=730bp
GACTTCTTAACTCTTCAAACCTCTCCCTTCGCTTTGCATCTCAAACGCAG
ACACGACTCTCTCCCTGGATCGCCGCTCCCTCCTCTGTTCGCCTACCGTT
GAACCGCTCGCAAAATTACAGAATTGCACTCCCTCCTCTGCATTCCACCG
TGAGTGGTGACTCGACGCAACCTCAACAAATGGCTTCAGCTGACGTAAAA
GCACAAGACCCTCGAATCGCTGGGATTTCCTCAGCAATTCGTGTCATCCC
AGACTTCCCTAAACCAGGGATTATGTTTCAAGATATCACAACATTGCTTC
TTGATACCAAGGCTTTTAGAGATACTATTGATCTGTTCGTTGAGAGGTAC
AAGGACAAAAACATCTCTGTTGTTGCAGGTATTGAAGCTAGGGGTTTTAT
ATTTGGGCCTCCTATTGCATTGGCTATTGGGGCAAAGTTTGTTCCTATGA
GGAAACCTAAGAAGCTTCCTGGGGAGGTTATTTCCGAAGAGTATTCCTTG
GAATATGGAAAAGATGTAATGGAGATGCATGTAGGTGCTGTACAAGCAGG
GGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAACTGGTGGGACCTTGT
CTGCTGCAATCAGGCTACTTGAGCGAGTTGGGGTGCATGTGGTTGAGTGT
GCATGCGTGATTGAACTGCCAGAGCTAAAGGGTCGGGAAACGCTGGGAGA
GAAACACTATTTGTCTTGTAGCTAAACTTG
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