FC930169

Overview
NameFC930169
Unique NameFC930169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15112 contig Ccv1_Contig15112:1..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_YERPE (Adenine phosphoribosyltransferase OS=Yersinia pestis GN=apt PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.339e-43
Identity = 81/160 (50.62%), Postives = 114/160 (71.25%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGEK 704
            I  +I+ IPD+PK GI+F+D+T+LL + KA+  +I L  E Y +  ++ V G EARGF+FG P+ALA+G  FVP+RKP KLP E ISE Y LEYG D +E+H  ++Q G++ L+VDDL+ATGGT+ A ++L+ R+G  VV  A +I LPEL G   L ++
Sbjct:   15 IKDSIKTIPDYPKAGILFRDVTSLLENPKAYSASIKLLSEHYSESGVTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVVHAAFIINLPELGGEARLTQQ 174          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_YERPA (Adenine phosphoribosyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=apt PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.339e-43
Identity = 81/160 (50.62%), Postives = 114/160 (71.25%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGEK 704
            I  +I+ IPD+PK GI+F+D+T+LL + KA+  +I L  E Y +  ++ V G EARGF+FG P+ALA+G  FVP+RKP KLP E ISE Y LEYG D +E+H  ++Q G++ L+VDDL+ATGGT+ A ++L+ R+G  VV  A +I LPEL G   L ++
Sbjct:   15 IKDSIKTIPDYPKAGILFRDVTSLLENPKAYSASIKLLSEHYSESGVTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVVHAAFIINLPELGGEARLTQQ 174          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_AERHH (Adenine phosphoribosyltransferase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=apt PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.339e-43
Identity = 80/153 (52.29%), Postives = 112/153 (73.20%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKG 683
            I ++I+ IPD+PKPGI+F+DIT+L+ +  AF+ TIDL    Y+D+ I+ + G EARGFIFG P+A A+G  FVP+RKP KLP  VI E Y+LEYG D +++H  A+  G++ L+VDDL+ATGGT+ A ++L+ R G  VV+ A +I LP L G
Sbjct:    9 IEASIKTIPDYPKPGILFRDITSLIENADAFKATIDLLANHYRDQGITKIVGTEARGFIFGAPVAYAMGLGFVPVRKPGKLPRAVIEESYALEYGTDTLQLHTDAIVPGDKVLVVDDLLATGGTVDATVKLIRRAGGEVVDAAFIISLPSLGG 161          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_CLOBA (Adenine phosphoribosyltransferase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=apt PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.990e-43
Identity = 86/164 (52.44%), Postives = 115/164 (70.12%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGEKHYLS 716
            +   IR+I  FPK GI F+DITTL+ D +  + +ID+FVE  KDK I ++ G EARGFIFG P+A A+GA FVP+RKP KLPGE IS  Y LEYG D +++H  +++ G+R  IVDDL+ATGGT+    +L+E  G  VV  A +IEL +LKGR+ LG+   +S
Sbjct:    3 LKEKIRIIDGFPKEGISFKDITTLIGDGEGLKASIDMFVEYLKDKEIDLIVGPEARGFIFGVPVAYALGAGFVPVRKPGKLPGETISVNYDLEYGSDSLQIHKDSIKKGQRVAIVDDLLATGGTVEGVAKLVEEAGGEVVSLAFLIELIDLKGRDKLGDYDVIS 166          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_VIBCM (Adenine phosphoribosyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=apt PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.211e-43
Identity = 84/168 (50.00%), Postives = 119/168 (70.83%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKG---RETLGEKHYLSC 719
            I S+I+ IPD+PK GI+F+D+T+LL D +A++ TI L VE+YKD   + V G EARGF+FG P+AL +G  FVP+RKP KLP + +++ Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A  +L+ ++G  V   A VI LPE+ G    E LG + Y  C
Sbjct:    9 IKSSIKSIPDYPKKGILFRDVTSLLEDAQAYQATIQLLVEKYKDMGFTKVVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRQTVAQSYELEYGTDTLEIHVDAIKPGDKVLVVDDLLATGGTIEATTKLIRQLGGEVEHAAFVINLPEIGGDKRLEGLGLQVYSIC 176          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_VIBCH (Adenine phosphoribosyltransferase OS=Vibrio cholerae GN=apt PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.211e-43
Identity = 84/168 (50.00%), Postives = 119/168 (70.83%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKG---RETLGEKHYLSC 719
            I S+I+ IPD+PK GI+F+D+T+LL D +A++ TI L VE+YKD   + V G EARGF+FG P+AL +G  FVP+RKP KLP + +++ Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A  +L+ ++G  V   A VI LPE+ G    E LG + Y  C
Sbjct:    9 IKSSIKSIPDYPKKGILFRDVTSLLEDAQAYQATIQLLVEKYKDMGFTKVVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRQTVAQSYELEYGTDTLEIHVDAIKPGDKVLVVDDLLATGGTIEATTKLIRQLGGEVEHAAFVINLPEIGGDKRLEGLGLQVYSIC 176          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_VIBC3 (Adenine phosphoribosyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=apt PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.211e-43
Identity = 84/168 (50.00%), Postives = 119/168 (70.83%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKG---RETLGEKHYLSC 719
            I S+I+ IPD+PK GI+F+D+T+LL D +A++ TI L VE+YKD   + V G EARGF+FG P+AL +G  FVP+RKP KLP + +++ Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A  +L+ ++G  V   A VI LPE+ G    E LG + Y  C
Sbjct:    9 IKSSIKSIPDYPKKGILFRDVTSLLEDAQAYQATIQLLVEKYKDMGFTKVVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRQTVAQSYELEYGTDTLEIHVDAIKPGDKVLVVDDLLATGGTIEATTKLIRQLGGEVEHAAFVINLPEIGGDKRLEGLGLQVYSIC 176          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_SERP5 (Adenine phosphoribosyltransferase OS=Serratia proteamaculans (strain 568) GN=apt PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.806e-43
Identity = 82/165 (49.70%), Postives = 118/165 (71.52%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGR---ETLGEKHY 710
            I  +I+ IPD+PKPGI+F+D+T+LL +  A+  +I+L VER+++  ++ V G EARGF+FG P+ALA+G  FVP+RKP KLP   +SE Y LEYG D +E+H  A+ AG++ L+VDDL+ATGGT+ A  +L+ R+G  V + A +I LP+L G     TLG + Y
Sbjct:   26 IKDSIKTIPDYPKPGILFRDVTSLLENPLAYAASIELLVERFREAGVTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRATLSESYELEYGTDKLEIHTDAISAGDKVLVVDDLLATGGTIEATAKLIRRLGGEVTDAAFIINLPDLGGEARLNTLGIECY 190          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_CLOTE (Adenine phosphoribosyltransferase OS=Clostridium tetani GN=apt PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.806e-43
Identity = 84/159 (52.83%), Postives = 113/159 (71.07%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGE 701
            +   IRVI  FPK GI F+D+TT+L + +AF+ TID  VE  KDKN+ VV G EARGF+FG P+A A+GA FVP+RK  KLP   IS +Y LEYG D +EMH  +++ G+R +I DDL+ATGGT+ + I ++E +G  +V    +IEL +LKGRE LG+
Sbjct:    3 LKDKIRVIQGFPKEGISFKDVTTILQEKEAFKYTIDTLVEELKDKNVDVVVGPEARGFLFGAPLAYALGAGFVPVRKKGKLPSTTISSKYELEYGSDELEMHKDSIKPGQRVVIADDLLATGGTICSVIEMIESLGGEIVSINFLIELTDLKGREKLGK 161          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_SHEPW (Adenine phosphoribosyltransferase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=apt PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.889e-43
Identity = 83/160 (51.88%), Postives = 116/160 (72.50%), Query Frame = 3
Query:  216 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            +A I ++I+ IPD+PK GI+F+D+T+LL D +A++ TI L VE YK++  + V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG DV+E+HV A+   ++ L+VDDL+ATGGT+ A ++L+  +G  V   A VI LP+L G + L
Sbjct:    8 LALIKNSIKTIPDYPKEGILFRDVTSLLEDPQAYKLTIGLLVEHYKEQGFTKVVGTEARGFLFGAPLALELGIGFVPVRKPGKLPRETISESYELEYGHDVLEIHVDAITKEDKVLVVDDLLATGGTIEATVKLIRNLGGQVNHAAFVISLPDLGGEKRL 167          
The following BLAST results are available for this feature:
BLAST of FC930169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_YERPE2.339e-4350.63Adenine phosphoribosyltransferase OS=Yersinia pest... [more]
APT_YERPA2.339e-4350.63Adenine phosphoribosyltransferase OS=Yersinia pest... [more]
APT_AERHH2.339e-4352.29Adenine phosphoribosyltransferase OS=Aeromonas hyd... [more]
APT_CLOBA3.990e-4352.44Adenine phosphoribosyltransferase OS=Clostridium b... [more]
APT_VIBCM5.211e-4350.00Adenine phosphoribosyltransferase OS=Vibrio choler... [more]
APT_VIBCH5.211e-4350.00Adenine phosphoribosyltransferase OS=Vibrio choler... [more]
APT_VIBC35.211e-4350.00Adenine phosphoribosyltransferase OS=Vibrio choler... [more]
APT_SERP56.806e-4349.70Adenine phosphoribosyltransferase OS=Serratia prot... [more]
APT_CLOTE6.806e-4352.83Adenine phosphoribosyltransferase OS=Clostridium t... [more]
APT_SHEPW8.889e-4351.88Adenine phosphoribosyltransferase OS=Shewanella pi... [more]

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Properties
Property NameValue
Genbank descriptionC34004E06EF PostHarvC1 Citrus clementina cDNA clone C34004E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930169 ID=FC930169; Name=FC930169; organism=Citrus clementina; type=EST; length=730bp
GACTTCTTAACTCTTCAAACCTCTCCCTTCGCTTTGCATCTCAAACGCAG
ACACGACTCTCTCCCTGGATCGCCGCTCCCTCCTCTGTTCGCCTACCGTT
GAACCGCTCGCAAAATTACAGAATTGCACTCCCTCCTCTGCATTCCACCG
TGAGTGGTGACTCGACGCAACCTCAACAAATGGCTTCAGCTGACGTAAAA
GCACAAGACCCTCGAATCGCTGGGATTTCCTCAGCAATTCGTGTCATCCC
AGACTTCCCTAAACCAGGGATTATGTTTCAAGATATCACAACATTGCTTC
TTGATACCAAGGCTTTTAGAGATACTATTGATCTGTTCGTTGAGAGGTAC
AAGGACAAAAACATCTCTGTTGTTGCAGGTATTGAAGCTAGGGGTTTTAT
ATTTGGGCCTCCTATTGCATTGGCTATTGGGGCAAAGTTTGTTCCTATGA
GGAAACCTAAGAAGCTTCCTGGGGAGGTTATTTCCGAAGAGTATTCCTTG
GAATATGGAAAAGATGTAATGGAGATGCATGTAGGTGCTGTACAAGCAGG
GGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAACTGGTGGGACCTTGT
CTGCTGCAATCAGGCTACTTGAGCGAGTTGGGGTGCATGTGGTTGAGTGT
GCATGCGTGATTGAACTGCCAGAGCTAAAGGGTCGGGAAACGCTGGGAGA
GAAACACTATTTGTCTTGTAGCTAAACTTG
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