FC930169

Overview
NameFC930169
Unique NameFC930169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_YERE8 (Adenine phosphoribosyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=apt PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.161e-42
Identity = 78/160 (48.75%), Postives = 115/160 (71.88%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGEK 704
            I  +I+ IPD+PK GI+F+D+T+LL D  A+  +I+L  ERY DK ++ V G EARGF+FG P+AL++G  FVP+RKP KLP   ISE Y LEYG D +E+H  +++ G++ L++DDL+ATGGT+ A ++L+ ++G  V + A VI LP+L G   L ++
Sbjct:   15 IKDSIKTIPDYPKAGILFRDVTSLLEDPLAYAASIELLTERYLDKGVTKVVGTEARGFLFGAPVALSLGVGFVPVRKPGKLPRATISESYELEYGTDKLEIHTDSIKPGDKVLVIDDLLATGGTIEATVKLIRKLGGEVTDAAFVINLPDLGGEARLNDQ 174          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_HAES2 (Adenine phosphoribosyltransferase OS=Haemophilus somnus (strain 2336) GN=apt PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.516e-42
Identity = 84/159 (52.83%), Postives = 115/159 (72.33%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGE 701
            I S+I+ IP+ PK GI+F+DIT+L    +AF+ TIDL +ERYK K I+ V G E+RGFIFG P+ALA+   F+ +RKP KLP E I++ Y LEYG+D +EMHV ++QAG+  L++DDL+ATGGT+ A ++L+ER+   V   A VI LP+L G   L E
Sbjct:    7 IKSSIKSIPNHPKEGIIFRDITSLTEVPEAFQATIDLIIERYKSKGITKVIGTESRGFIFGAPVALALNVPFILVRKPGKLPRETIAQSYQLEYGQDTLEMHVSSIQAGDNVLVIDDLLATGGTIEATVKLVERLQGQVKHAAFVISLPDLGGEVRLRE 165          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_HAES1 (Adenine phosphoribosyltransferase OS=Haemophilus somnus (strain 129Pt) GN=apt PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.516e-42
Identity = 84/159 (52.83%), Postives = 115/159 (72.33%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGE 701
            I S+I+ IP+ PK GI+F+DIT+L    +AF+ TIDL +ERYK K I+ V G E+RGFIFG P+ALA+   F+ +RKP KLP E I++ Y LEYG+D +EMHV ++QAG+  L++DDL+ATGGT+ A ++L+ER+   V   A VI LP+L G   L E
Sbjct:    7 IKSSIKSIPNHPKEGIIFRDITSLTEVPEAFQATIDLIIERYKSKGITKVIGTESRGFIFGAPVALALNVPFILVRKPGKLPRETIAQSYQLEYGQDTLEMHVSSIQAGDNVLVIDDLLATGGTIEATVKLVERLQGQVKHAAFVISLPDLGGEVRLRE 165          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_ERWCT (Adenine phosphoribosyltransferase OS=Erwinia carotovora subsp. atroseptica GN=apt PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.516e-42
Identity = 80/159 (50.31%), Postives = 114/159 (71.70%), Query Frame = 3
Query:  225 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETLGE 701
            I ++I+ IPD+PKPGI+F+D+T+LL D  A+  +ID+   RY++  ++ V G EARGF+FG P+ALA+G  FVP+RKP KLP   ISE Y LEYG D +E+H  A+ AG+  L++DDL+ATGGTL A ++L+ R+G  V + A +I L +L G + L E
Sbjct:   13 IKNSIKSIPDYPKPGILFRDVTSLLEDPVAYAASIDMLANRYRNTGVTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRPTISESYELEYGSDTLEIHADAISAGDNVLVIDDLLATGGTLEATVKLIRRLGGTVNDAAFIINLFDLGGEQRLTE 171          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_DESHY (Adenine phosphoribosyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=apt PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.516e-42
Identity = 84/153 (54.90%), Postives = 109/153 (71.24%), Query Frame = 3
Query:  237 IRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            IRVI DFPKPGI F+DITTLL D +A+R  +D  VER ++    ++ G EARGF+ G P+A A+G  FVP+RKP KLPG+ +SE Y LEYG D +E+H  A+Q G+R  IVDDL+ATGGT SA  RL+E+ G  V   + +IEL  L+GR+ L
Sbjct:   10 IRVIDDFPKPGISFKDITTLLKDGEAYRAAVDAIVERVRESQPDLIVGPEARGFLLGAPVAYALGIGFVPVRKPGKLPGKTVSETYELEYGSDTLEVHADAIQPGQRIAIVDDLLATGGTTSATARLIEKTGAQVAGMSFLIELGFLEGRKRL 162          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_DESHD (Adenine phosphoribosyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=apt PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.516e-42
Identity = 84/153 (54.90%), Postives = 109/153 (71.24%), Query Frame = 3
Query:  237 IRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            IRVI DFPKPGI F+DITTLL D +A+R  +D  VER ++    ++ G EARGF+ G P+A A+G  FVP+RKP KLPG+ +SE Y LEYG D +E+H  A+Q G+R  IVDDL+ATGGT SA  RL+E+ G  V   + +IEL  L+GR+ L
Sbjct:    7 IRVIDDFPKPGISFKDITTLLKDGEAYRAAVDAIVERVRESQPDLIVGPEARGFLLGAPVAYALGIGFVPVRKPGKLPGKTVSETYELEYGSDTLEVHADAIQPGQRIAIVDDLLATGGTTSATARLIEKTGAQVAGMSFLIELGFLEGRKRL 159          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_VIBVY (Adenine phosphoribosyltransferase OS=Vibrio vulnificus (strain YJ016) GN=apt PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.980e-42
Identity = 85/171 (49.71%), Postives = 118/171 (69.01%), Query Frame = 3
Query:  216 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKG---RETLGEKHYLSC 719
            IA I ++I+ IPD+PKPGI+F+D+T+LL D +A++ TI L V++YKD   + V G EARGF+FG P+AL +G  FVP+RKP KLP   I++ Y LEYG D +E+H  A+  G++ L+VDDL+ATGGT+ A  +L+ ++G  V   A VI LPE+ G    E LG   Y  C
Sbjct:    6 IAQIQASIKSIPDYPKPGILFRDVTSLLEDAQAYQATIQLLVDKYKDMGFTKVVGTEARGFLFGAPLALQLGVGFVPVRKPGKLPRNTIAQSYELEYGVDTLEIHTDAIVEGDKVLVVDDLLATGGTIEATTKLIRQLGGVVEHAAFVINLPEIGGDKRLEGLGLNVYSIC 176          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_VIBVU (Adenine phosphoribosyltransferase OS=Vibrio vulnificus GN=apt PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.980e-42
Identity = 85/171 (49.71%), Postives = 118/171 (69.01%), Query Frame = 3
Query:  216 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKG---RETLGEKHYLSC 719
            IA I ++I+ IPD+PKPGI+F+D+T+LL D +A++ TI L V++YKD   + V G EARGF+FG P+AL +G  FVP+RKP KLP   I++ Y LEYG D +E+H  A+  G++ L+VDDL+ATGGT+ A  +L+ ++G  V   A VI LPE+ G    E LG   Y  C
Sbjct:    6 IAQIQASIKSIPDYPKPGILFRDVTSLLEDAQAYQATIQLLVDKYKDMGFTKVVGTEARGFLFGAPLALQLGVGFVPVRKPGKLPRNTIAQSYELEYGVDTLEIHTDAIVEGDKVLVVDDLLATGGTIEATTKLIRQLGGVVEHAAFVINLPEIGGDKRLEGLGLNVYSIC 176          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_VIBPA (Adenine phosphoribosyltransferase OS=Vibrio parahaemolyticus GN=apt PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.586e-42
Identity = 83/160 (51.88%), Postives = 114/160 (71.25%), Query Frame = 3
Query:  216 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRETL 695
            I+ I S+I+ I D+PKPGI+F+D+T+LL D KA++ TI L VERYKD   + V G EARGF+FG P+AL +G  FVP+RKP KLP   I++ Y LEYG D +E+H  A+  G++ L+VDDL+ATGGT+ A  +L+ ++G  V   A VI LPE+ G + L
Sbjct:    6 ISLIKSSIKSIQDYPKPGILFRDVTSLLEDAKAYQATIGLLVERYKDMGFTKVVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRPTIAQSYELEYGIDTLEIHTDAIVEGDKVLVVDDLLATGGTIEATTKLIRQLGGEVEHAAFVINLPEIGGDKRL 165          
BLAST of FC930169 vs. ExPASy Swiss-Prot
Match: APT_VIBHB (Adenine phosphoribosyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=apt PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.586e-42
Identity = 86/171 (50.29%), Postives = 118/171 (69.01%), Query Frame = 3
Query:  216 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKG---RETLGEKHYLSC 719
            I+ I S+I+ I D+PKPGI+F+D+T+LL D KA++ TI+L V+RYKD   + V G EARGF+FG P+AL +G  FVP+RKP KLP   I++ Y LEYG D +E+H  A+  G++ L+VDDL+ATGGT+ A  +L+ ++G  V   A VI LPE+ G    E LG   Y  C
Sbjct:    6 ISLIRSSIKSIQDYPKPGILFRDVTSLLEDAKAYQATINLLVDRYKDMGFTKVVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRPTIAQSYELEYGVDTLEIHTDAIVEGDKVLVVDDLLATGGTIEATTKLIRQLGGEVEHAAFVINLPEIGGDKRLEGLGLNVYSIC 176          
The following BLAST results are available for this feature:
BLAST of FC930169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_YERE81.161e-4248.75Adenine phosphoribosyltransferase OS=Yersinia ente... [more]
APT_HAES21.516e-4252.83Adenine phosphoribosyltransferase OS=Haemophilus s... [more]
APT_HAES11.516e-4252.83Adenine phosphoribosyltransferase OS=Haemophilus s... [more]
APT_ERWCT1.516e-4250.31Adenine phosphoribosyltransferase OS=Erwinia carot... [more]
APT_DESHY1.516e-4254.90Adenine phosphoribosyltransferase OS=Desulfitobact... [more]
APT_DESHD1.516e-4254.90Adenine phosphoribosyltransferase OS=Desulfitobact... [more]
APT_VIBVY1.980e-4249.71Adenine phosphoribosyltransferase OS=Vibrio vulnif... [more]
APT_VIBVU1.980e-4249.71Adenine phosphoribosyltransferase OS=Vibrio vulnif... [more]
APT_VIBPA2.586e-4251.88Adenine phosphoribosyltransferase OS=Vibrio paraha... [more]
APT_VIBHB2.586e-4250.29Adenine phosphoribosyltransferase OS=Vibrio harvey... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34004E06EF PostHarvC1 Citrus clementina cDNA clone C34004E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930169 ID=FC930169; Name=FC930169; organism=Citrus clementina; type=EST; length=730bp
GACTTCTTAACTCTTCAAACCTCTCCCTTCGCTTTGCATCTCAAACGCAG
ACACGACTCTCTCCCTGGATCGCCGCTCCCTCCTCTGTTCGCCTACCGTT
GAACCGCTCGCAAAATTACAGAATTGCACTCCCTCCTCTGCATTCCACCG
TGAGTGGTGACTCGACGCAACCTCAACAAATGGCTTCAGCTGACGTAAAA
GCACAAGACCCTCGAATCGCTGGGATTTCCTCAGCAATTCGTGTCATCCC
AGACTTCCCTAAACCAGGGATTATGTTTCAAGATATCACAACATTGCTTC
TTGATACCAAGGCTTTTAGAGATACTATTGATCTGTTCGTTGAGAGGTAC
AAGGACAAAAACATCTCTGTTGTTGCAGGTATTGAAGCTAGGGGTTTTAT
ATTTGGGCCTCCTATTGCATTGGCTATTGGGGCAAAGTTTGTTCCTATGA
GGAAACCTAAGAAGCTTCCTGGGGAGGTTATTTCCGAAGAGTATTCCTTG
GAATATGGAAAAGATGTAATGGAGATGCATGTAGGTGCTGTACAAGCAGG
GGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAACTGGTGGGACCTTGT
CTGCTGCAATCAGGCTACTTGAGCGAGTTGGGGTGCATGTGGTTGAGTGT
GCATGCGTGATTGAACTGCCAGAGCTAAAGGGTCGGGAAACGCTGGGAGA
GAAACACTATTTGTCTTGTAGCTAAACTTG
back to top