FC930171

Overview
NameFC930171
Unique NameFC930171
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930171 vs. ExPASy Swiss-Prot
Match: DCAM_TRYCR (S-adenosylmethionine decarboxylase proenzyme OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.251e-24
Identity = 77/215 (35.81%), Postives = 106/215 (49.30%), Query Frame = 3
Query:    9 IVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRW-HVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEIC-------DFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFE 629
            IVS  SNEY+ SYVL+ESSLFV   ++I+ TCGTT LL ++P +          V  V +   ++ F   Q  PH S +EE   L  +F         F+ G  D+   +  VY          N    L M M GLDR +   ++     S    TE + IRK     ++        D +F+PCGYS+N+I G    TIH+TPED  S+AS+E
Sbjct:   69 IVSKESNEYIRSYVLTESSLFVMRDRIILITCGTTTLLNAVPFVLDAVSDVRGEVEWVSFMHKNYSFPWEQKGPHLSMAEEFNTLRTYF----PSGKPFIFGPVDSDHYFLFVYDDVIRPCETENDT-QLSMTMYGLDRTQTKHWFSDRFISTG--TETAAIRKATKLDKVADDSWKLHDLQFEPCGYSINTIRGAEYQTIHITPEDHCSFASYE 276          
BLAST of FC930171 vs. ExPASy Swiss-Prot
Match: DCAM_YEAST (S-adenosylmethionine decarboxylase proenzyme OS=Saccharomyces cerevisiae GN=SPE2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18
Identity = 74/249 (29.72%), Postives = 114/249 (45.78%), Query Frame = 3
Query:    9 IVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXV-----------RSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY------TLEMCMTGLDRKRASVFYKTNESSAAMM---TEDSG--IRKILPKSEICD------------------FEFDPCGYSMNSIEGDA-VSTIHVTPEDGFSYASFEA 632
            ++S    + LD+++LSESSLFV+ +K+ +KTCGTT  L  +  +                        V Y+R  F+F   Q   H+++++EV  L+    KF  +  ++ +G  D +  W++Y    +  +     Y      T E+ MT LD + AS F    E+S   +    ED G  +   + K+   D                  F F PCGYS N I  +    T+HVTPE G+SYASFE+
Sbjct:   71 VLSMKKTKELDAFLLSESSLFVFDHKLTMKTCGTTTTLFCLEKLFQIVEQELSWAFRTTQGGKYKPFKVFYSRRCFLFPCKQAAIHQNWADEVDYLN----KFFDNGKSYSVGRNDKSNHWNLYVTETDRSTPKGKEYIEDDDETFEVLMTELDPECASKFVCGPEASTTALVEPNEDKGHNLGYQMTKNTRLDEIYVNSAQDSDLSFHHDAFAFTPCGYSSNMILAEKYYYTLHVTPEKGWSYASFES 315          
The following BLAST results are available for this feature:
BLAST of FC930171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DCAM_TRYCR2.251e-2435.81S-adenosylmethionine decarboxylase proenzyme OS=Tr... [more]
DCAM_YEAST3.149e-1829.72S-adenosylmethionine decarboxylase proenzyme OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionC34004E08EF PostHarvC1 Citrus clementina cDNA clone C34004E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930171 ID=FC930171; Name=FC930171; organism=Citrus clementina; type=EST; length=695bp
GAATGACAATTGTTTCTTCGTTGTCAAATGAATATCTTGATTCATATGTC
CTCTCAGAATCAAGCCTCTTTGTGTACCCTTACAAAGTTATTATCAAAAC
TTGTGGGACTACCAAGCTGCTTCTTTCAATCCCTGCCATCCTCAAGTTAT
CTGAGTCCCTCTCGTTGTCTGTTCGATCTGTGAGATACACTCGCGGAAGC
TTCATATTTGCTGGGGCTCAGCCATTTCCACACCGTAGCTTCTCTGAGGA
AGTAGCTGTCCTTGATGGACACTTTGGCAAGTTTGGTATGGACAGCACAG
CTTTTGTCATGGGTAGTCCTGACAACACAAAGAGATGGCATGTTTACTCT
GCTTCTGCTGAAGCAGGAAGCCATGTAAACCCAGTTTACACTCTAGAGAT
GTGCATGACTGGTTTGGACAGAAAGAGGGCATCTGTCTTCTACAAAACTA
ATGAAAGCTCAGCGGCTATGATGACCGAGGACTCTGGCATCAGAAAGATT
CTTCCAAAATCTGAGATTTGTGATTTTGAGTTTGACCCTTGTGGTTACTC
CATGAATAGTATTGAAGGGGATGCAGTATCTACTATCCACGTCACACCTG
AAGATGGTTTCAGTTATGCAAGTTTTGAGGCTGTGGGTTATGATTTTGAG
GTTGTGAAGTTGACTCCCTTGCTTGAGAGGGTGCTTACTTGCTTC
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