FC930173

Overview
NameFC930173
Unique NameFC930173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15113 contig Ccv1_Contig15113:1..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HAT7_ARATH (Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana GN=HAT7 PE=2 SV=4)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 53/104 (50.96%), Postives = 73/104 (70.19%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEAL---KKEKQALVIQLQKTNELLQNKPRRE 593
            R + EQ+R+LE  FE   +LEP +K+QLAK LGLQPRQ+AIWFQN+RARWK+KQLERDY+ L+  F+ L S  ++L    K+  A ++ L+K +     K +RE
Sbjct:  118 RLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHAELVALKKHDRKESAKIKRE 221          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSJ (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. japonica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.108e-20
Identity = 50/106 (47.17%), Postives = 71/106 (66.98%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPS 608
            R + EQ++ LE  FE E +LEP +K +LA+ LG+ PRQVA+WFQN+RARWK+KQLE D++ L+A ++ LA+   AL  +   L  Q+    E LQ+K    + SPS
Sbjct:   89 RLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQDK----ETSPS 190          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSI (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. indica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.108e-20
Identity = 50/106 (47.17%), Postives = 71/106 (66.98%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPS 608
            R + EQ++ LE  FE E +LEP +K +LA+ LG+ PRQVA+WFQN+RARWK+KQLE D++ L+A ++ LA+   AL  +   L  Q+    E LQ+K    + SPS
Sbjct:   89 RLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQDK----ETSPS 190          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: ATB13_ARATH (Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 53/128 (41.41%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRRED---QSPSERQCCGQVEGVNSMEKRLD 665
            R + EQ+++LE  FE   +LEP +K+QLA+ LGLQPRQ+AIWFQN+RARWK+KQLE+DY+ L+  F+ L +  + L+   Q L  ++      L+N+ + E       +E  C  + +  +S   RLD
Sbjct:   88 RLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDTLKAENDLLQTHNQKLQAEIMG----LKNREQTESINLNKETEGSCSNRSDN-SSDNLRLD 210          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX21_ORYSJ (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. japonica GN=HOX21 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.014e-19
Identity = 59/132 (44.70%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEAL---KKEKQALVIQL---QKTNELLQ-NKPRREDQSPSERQCCGQVEGVNSMEKRLD 665
            R + EQ+R+LE  FE   +LEP +K+QLA+ LGLQPRQVAIWFQN+RARWK+KQLE+DY+ L+   + + +  +AL    K+ QA ++ L   +  +EL+  NK        +E  C  + E  NS E  LD
Sbjct:  133 RLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQAEIVALKGREAASELINLNK-------ETEASCSNRSE--NSSEINLD 255          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX21_ORYSI (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. indica GN=HOX21 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.014e-19
Identity = 59/132 (44.70%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEAL---KKEKQALVIQL---QKTNELLQ-NKPRREDQSPSERQCCGQVEGVNSMEKRLD 665
            R + EQ+R+LE  FE   +LEP +K+QLA+ LGLQPRQVAIWFQN+RARWK+KQLE+DY+ L+   + + +  +AL    K+ QA ++ L   +  +EL+  NK        +E  C  + E  NS E  LD
Sbjct:  127 RLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQAEIVALKGREAASELINLNK-------ETEASCSNRSE--NSSEINLD 249          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: ATB20_ARATH (Homeobox-leucine zipper protein ATHB-20 OS=Arabidopsis thaliana GN=ATHB-20 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.654e-19
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRRE 593
            R   EQ+++LE  FE   +LEP +K+QLAK LG+QPRQ+AIWFQN+RARWK++QLERDY+ L+  F +L S   +L    + L+ ++      L+NK   E
Sbjct:   90 RLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNASLLAYNKKLLAEVM----ALKNKECNE 186          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSJ (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. japonica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.306e-18
Identity = 40/87 (45.98%), Postives = 65/87 (74.71%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQL 551
            R + EQ+R+LE  FE + +L+P +K ++A++L L PRQVA+WFQN+RARWK+KQ+ERD+  L++  + L    +AL+++K AL  ++
Sbjct:   68 RLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEI 154          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSI (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. indica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.306e-18
Identity = 40/87 (45.98%), Postives = 65/87 (74.71%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQL 551
            R + EQ+R+LE  FE + +L+P +K ++A++L L PRQVA+WFQN+RARWK+KQ+ERD+  L++  + L    +AL+++K AL  ++
Sbjct:   44 RLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEI 130          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX25_ORYSJ (Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. japonica GN=HOX25 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETR-LEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPS 608
            R + EQ+R+LE  FE E R LEP +K +LA+ LG+ PRQVA+WFQN+RARWK+KQLE D++ L+A  + L +   AL  + ++L  Q+    E LQ   +    SP+
Sbjct:   85 RLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRTALAADNESLRSQVILLTEKLQANGKSPSPSPA 191          
The following BLAST results are available for this feature:
BLAST of FC930173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
HAT7_ARATH1.068e-2050.96Homeobox-leucine zipper protein HAT7 OS=Arabidopsi... [more]
HOX5_ORYSJ3.108e-2047.17Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX5_ORYSI3.108e-2047.17Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
ATB13_ARATH9.042e-2041.41Homeobox-leucine zipper protein ATHB-13 OS=Arabido... [more]
HOX21_ORYSJ2.014e-1944.70Homeobox-leucine zipper protein HOX21 OS=Oryza sat... [more]
HOX21_ORYSI2.014e-1944.70Homeobox-leucine zipper protein HOX21 OS=Oryza sat... [more]
ATB20_ARATH7.654e-1947.52Homeobox-leucine zipper protein ATHB-20 OS=Arabido... [more]
HOX8_ORYSJ1.306e-1845.98Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]
HOX8_ORYSI1.306e-1845.98Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]
HOX25_ORYSJ2.227e-1845.79Homeobox-leucine zipper protein HOX25 OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34004E10EF PostHarvC1 Citrus clementina cDNA clone C34004E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930173 ID=FC930173; Name=FC930173; organism=Citrus clementina; type=EST; length=669bp
GCCCCGTCAGTCTTAGAAACAAAACCGTGATATGCACACAATAAGCAAAT
ATAATTAAAACATGCACAGAGCACTTGACACAGCTTAAACATCCCCCAAA
AACACAGCCCCCTCTTTGAATGATTTTTTTTTAAAATTAGAATATACAAA
AATTATCTAGTCACCAGCACAAATTCCGACTAAAGATGTTAGATGGGGGC
GAATATTCTCCGGCGGCTGAGCCATACAGCTGCATGAACGAGATCACAAC
AACAACGACAACCAGAAAGAAGAAGTGCAAGAACAAGAAGAGGTTCAGTG
ATGAACAGATCAGATCATTGGAACTCATGTTTGAAAACGAAACTAGACTC
GAGCCTCGAAAGAAGCTGCAGTTGGCTAAAGAACTTGGGTTGCAGCCTCG
TCAGGTTGCAATATGGTTTCAGAATAAGAGAGCTAGATGGAAGTCGAAGC
AGCTTGAACGAGACTACAACATACTTCAAGCCAATTTCAATAACCTTGCT
TCAAGGTTCGAAGCTCTGAAGAAAGAAAAACAAGCCTTGGTTATTCAGTT
GCAAAAGACGAATGAGTTGTTGCAAAATAAGCCACGACGGGAGGATCAGA
GTCCGAGTGAGAGGCAGTGTTGCGGTCAAGTTGAAGGTGTAAACAGCATG
GAGAAGCGATTGGACAATG
back to top