FC930173

Overview
NameFC930173
Unique NameFC930173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX25_ORYSI (Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. indica GN=HOX25 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETR-LEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPS 608
            R + EQ+R+LE  FE E R LEP +K +LA+ LG+ PRQVA+WFQN+RARWK+KQLE D++ L+A  + L +   AL  + ++L  Q+    E LQ   +    SP+
Sbjct:   25 RLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRAALAADNESLRSQVILLTEKLQANGKSPSPSPA 131          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSJ (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. japonica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEAL 518
            R S EQ+R+LE  FE+  +LEP +K QLA+ LGLQPRQVAIWFQN+RARWK+KQLE+D++ L+   +   +  +AL
Sbjct:  107 RLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDAL 182          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSI (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. indica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEAL 518
            R S EQ+R+LE  FE+  +LEP +K QLA+ LGLQPRQVAIWFQN+RARWK+KQLE+D++ L+   +   +  +AL
Sbjct:  107 RLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDAL 182          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: ATB23_ARATH (Homeobox-leucine zipper protein ATHB-23 OS=Arabidopsis thaliana GN=ATHB-23 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17
Identity = 50/112 (44.64%), Postives = 75/112 (66.96%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQ--KTNELLQ--NKPRREDQSPSER 614
            R + EQ+++LE  FE   +LE  +KL+LA+ LGLQPRQ+AIWFQN+RAR K+KQLE+DY++L+  F +L    E L+ + Q L  Q+   K+ E ++  N  +  + S S+R
Sbjct:   74 RLNMEQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFESLRDENEVLQTQNQKLQAQVMALKSREPIESINLNKETEGSCSDR 185          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: ATB54_ARATH (Homeobox-leucine zipper protein ATHB-54 OS=Arabidopsis thaliana GN=ATHB-54 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.200e-17
Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = 3
Query:  306 QIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNEL 569
            Q+R LE  FE E RLEP +KL LA++LGLQP QVA+WFQN+RAR+K+KQLE D + L+A++  L + ++ L  + Q L  ++Q  N L
Sbjct:   76 QLRLLEESFEEEKRLEPDRKLWLAEKLGLQPSQVAVWFQNRRARYKTKQLEHDCDSLKASYAKLKTDWDILFVQNQTLKSKVQFLNRL 163          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: ATB51_ARATH (Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB-51 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.222e-16
Identity = 41/97 (42.27%), Postives = 68/97 (70.10%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNK 581
            R +  Q+ SLE  F+ E +L+  +K++L++ELGLQPRQ+A+WFQN+RARWK+KQLE+ Y       ++L   ++ + +EKQ L  +++K   LL+++
Sbjct:   81 RLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLY-------DSLRQEYDVVSREKQMLHDEVKKLRALLRDQ 170          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: ATB40_ARATH (Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.084e-16
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPS 608
            + +DEQ+  LE+ F +E +LE  +K +LA ELGL PRQVA+WFQN+RARWK+K+LE +YN L+ + +N+      L+ E   L  QL      +Q    R +   S
Sbjct:   59 KLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVVDKCRLESEVIQLKEQLYDAEREIQRLAERVEGGSS 164          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: ATB53_ARATH (Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana GN=ATHB-53 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNN-------LASRFEALKKEKQALVIQLQKTNELLQNKPRREDQS 602
            + +DEQ+  LE  F NE +LE  +K ++A ELGL PRQVA+WFQN+RARWK+K+LE +Y  L+ + +N       L S+   L ++      +++K +E L+  P     S
Sbjct:   74 KLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDNVVLGQCQLESQILKLTEQLSEAQSEIRKLSERLEEMPTNSSSS 184          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: ATB21_ARATH (Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRR 590
            + SDEQ+R LE+ FE++ +LE  +K +LA ELGL PRQVA+WFQN+RARWK+K++E +Y  L+  +         L  E   L  QL +    +Q   +R
Sbjct:   64 KLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNAYETTVVEKCRLDSEVIHLKEQLYEAEREIQRLAKR 163          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: ATB22_ARATH (Homeobox-leucine zipper protein ATHB-22 OS=Arabidopsis thaliana GN=ATHB-22 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 44/117 (37.61%), Postives = 70/117 (59.83%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQL--------AKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPSERQ 617
            + + EQ++ LE  F+ E +L P +K++L        +KELGLQPRQ+A+WFQN++ARWK+KQLE  Y        +L   F+ + +EK+ L  +L +   ++     RED S  ++Q
Sbjct:   74 KMTSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKELGLQPRQIAVWFQNRKARWKNKQLEHLY-------ESLRQEFDIVSREKELLQEELIQLKSMI-----REDSSCKKKQ 178          
The following BLAST results are available for this feature:
BLAST of FC930173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
HOX25_ORYSI2.227e-1845.79Homeobox-leucine zipper protein HOX25 OS=Oryza sat... [more]
HOX23_ORYSJ2.909e-1856.58Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
HOX23_ORYSI2.909e-1856.58Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
ATB23_ARATH1.105e-1744.64Homeobox-leucine zipper protein ATHB-23 OS=Arabido... [more]
ATB54_ARATH4.200e-1751.14Homeobox-leucine zipper protein ATHB-54 OS=Arabido... [more]
ATB51_ARATH1.222e-1642.27Putative homeobox-leucine zipper protein ATHB-51 O... [more]
ATB40_ARATH2.084e-1642.45Homeobox-leucine zipper protein ATHB-40 OS=Arabido... [more]
ATB53_ARATH6.065e-1639.64Homeobox-leucine zipper protein ATHB-53 OS=Arabido... [more]
ATB21_ARATH6.065e-1643.00Homeobox-leucine zipper protein ATHB-21 OS=Arabido... [more]
ATB22_ARATH6.706e-1537.61Homeobox-leucine zipper protein ATHB-22 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC34004E10EF PostHarvC1 Citrus clementina cDNA clone C34004E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930173 ID=FC930173; Name=FC930173; organism=Citrus clementina; type=EST; length=669bp
GCCCCGTCAGTCTTAGAAACAAAACCGTGATATGCACACAATAAGCAAAT
ATAATTAAAACATGCACAGAGCACTTGACACAGCTTAAACATCCCCCAAA
AACACAGCCCCCTCTTTGAATGATTTTTTTTTAAAATTAGAATATACAAA
AATTATCTAGTCACCAGCACAAATTCCGACTAAAGATGTTAGATGGGGGC
GAATATTCTCCGGCGGCTGAGCCATACAGCTGCATGAACGAGATCACAAC
AACAACGACAACCAGAAAGAAGAAGTGCAAGAACAAGAAGAGGTTCAGTG
ATGAACAGATCAGATCATTGGAACTCATGTTTGAAAACGAAACTAGACTC
GAGCCTCGAAAGAAGCTGCAGTTGGCTAAAGAACTTGGGTTGCAGCCTCG
TCAGGTTGCAATATGGTTTCAGAATAAGAGAGCTAGATGGAAGTCGAAGC
AGCTTGAACGAGACTACAACATACTTCAAGCCAATTTCAATAACCTTGCT
TCAAGGTTCGAAGCTCTGAAGAAAGAAAAACAAGCCTTGGTTATTCAGTT
GCAAAAGACGAATGAGTTGTTGCAAAATAAGCCACGACGGGAGGATCAGA
GTCCGAGTGAGAGGCAGTGTTGCGGTCAAGTTGAAGGTGTAAACAGCATG
GAGAAGCGATTGGACAATG
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