FC930173

Overview
NameFC930173
Unique NameFC930173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSJ (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. japonica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.683e-14
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQ 479
            R SDEQ+  LEL F  E +LE  +K+ LA ELGL P+QVA+WFQN+RAR KSK LE +++ L+
Sbjct:   65 RLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLK 127          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSI (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. indica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.683e-14
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQ 479
            R SDEQ+  LEL F  E +LE  +K+ LA ELGL P+QVA+WFQN+RAR KSK LE +++ L+
Sbjct:   65 RLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLK 127          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSJ (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. japonica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELL 572
            R SDEQ R LE+ F+ E +LE  +K+QLA ELGL  +QVA+WFQN+RAR KSK +E +       F  L S  +A+  +   L  +L K  E L
Sbjct:   64 RLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEE-------FAKLRSAHDAVVLQNCHLETELLKLKERL 150          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSI (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. indica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELL 572
            R SDEQ R LE+ F+ E +LE  +K+QLA ELGL  +QVA+WFQN+RAR KSK +E +       F  L S  +A+  +   L  +L K  E L
Sbjct:   64 RLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEE-------FAKLRSAHDAVVLQNCHLETELLKLKERL 150          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: ATB52_ARATH (Homeobox-leucine zipper protein ATHB-52 OS=Arabidopsis thaliana GN=ATHB-52 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELL 572
            R + +Q+R LE  F    +LEP  KLQL+ +LGL  RQVA+WFQNKRAR+K++ LE  +  LQ+      S    L+ + Q L  +L++    L
Sbjct:   14 RLTQDQVRQLEKCFTMNKKLEPDLKLQLSNQLGLPQRQVAVWFQNKRARFKTQSLEVQHCTLQSKHEAALSDKAKLEHQVQFLQDELKRARNQL 107          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQAL 539
            R S +Q   LE  F     L PR+K  LA++LGL+PRQV +WFQN+RAR K KQ E D   L+     L      L+KE Q L
Sbjct:   85 RLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQEL 167          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQAL 539
            R S +Q   LE  F     L PR+K  LA++LGL+PRQV +WFQN+RAR K KQ E D   L+     L      L+KE Q L
Sbjct:   85 RLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQEL 167          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQAL 539
            R S EQ   LE  F+  + L P++K+ LAK+L L+PRQV +WFQN+RAR K KQ E D  +L+     L      L +E Q L
Sbjct:   97 RLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQL 179          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQAL 539
            R S EQ   LE  F+  + L P++K+ LAK+L L+PRQV +WFQN+RAR K KQ E D  +L+     L      L +E Q L
Sbjct:   97 RLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQL 179          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKE 527
            R S EQ   LE  F+  + L P++KL LAK+L L+PRQV +WFQN+RAR K KQ E D   L+     L      L+KE
Sbjct:  180 RLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKE 258          
The following BLAST results are available for this feature:
BLAST of FC930173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
HOX14_ORYSJ9.683e-1457.14Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
HOX14_ORYSI9.683e-1457.14Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
HOX12_ORYSJ4.806e-1345.74Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]
HOX12_ORYSI4.806e-1345.74Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]
ATB52_ARATH3.115e-1241.49Homeobox-leucine zipper protein ATHB-52 OS=Arabido... [more]
HOX17_ORYSJ2.637e-1145.78Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX17_ORYSI2.637e-1145.78Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX15_ORYSJ2.637e-1144.58Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX15_ORYSI2.637e-1144.58Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX11_ORYSJ2.637e-1146.84Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC34004E10EF PostHarvC1 Citrus clementina cDNA clone C34004E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930173 ID=FC930173; Name=FC930173; organism=Citrus clementina; type=EST; length=669bp
GCCCCGTCAGTCTTAGAAACAAAACCGTGATATGCACACAATAAGCAAAT
ATAATTAAAACATGCACAGAGCACTTGACACAGCTTAAACATCCCCCAAA
AACACAGCCCCCTCTTTGAATGATTTTTTTTTAAAATTAGAATATACAAA
AATTATCTAGTCACCAGCACAAATTCCGACTAAAGATGTTAGATGGGGGC
GAATATTCTCCGGCGGCTGAGCCATACAGCTGCATGAACGAGATCACAAC
AACAACGACAACCAGAAAGAAGAAGTGCAAGAACAAGAAGAGGTTCAGTG
ATGAACAGATCAGATCATTGGAACTCATGTTTGAAAACGAAACTAGACTC
GAGCCTCGAAAGAAGCTGCAGTTGGCTAAAGAACTTGGGTTGCAGCCTCG
TCAGGTTGCAATATGGTTTCAGAATAAGAGAGCTAGATGGAAGTCGAAGC
AGCTTGAACGAGACTACAACATACTTCAAGCCAATTTCAATAACCTTGCT
TCAAGGTTCGAAGCTCTGAAGAAAGAAAAACAAGCCTTGGTTATTCAGTT
GCAAAAGACGAATGAGTTGTTGCAAAATAAGCCACGACGGGAGGATCAGA
GTCCGAGTGAGAGGCAGTGTTGCGGTCAAGTTGAAGGTGTAAACAGCATG
GAGAAGCGATTGGACAATG
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