FC930173

Overview
NameFC930173
Unique NameFC930173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKE 527
            R S EQ   LE  F+  + L P++KL LAK+L L+PRQV +WFQN+RAR K KQ E D   L+     L      L+KE
Sbjct:   93 RLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKE 171          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKE 527
            R S +Q   LE  F+  + L P++K+ LA  LGL+PRQV +WFQN+RAR K KQ E D   L+     LA   + L+KE
Sbjct:  118 RLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKE 196          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKE 527
            R S +Q   LE  F+  + L P++K+ LA  LGL+PRQV +WFQN+RAR K KQ E D   L+     LA   + L+KE
Sbjct:  118 RLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKE 196          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 43/116 (37.07%), Postives = 58/116 (50.00%), Query Frame = 3
Query:  192 DGGEYSPAAEPYSCMNEIXXXXXXXXXXXXXXXRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQAL 539
            DGGE SP  E  +                    R + +Q   LE  F++ + L P++K  LA++L L+PRQV +WFQN+RAR K KQ E D   L+     LA     L+KE Q L
Sbjct:   83 DGGEESPEEEEMTERVISDYHEDEEGISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQEL 198          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKE 527
            R S +Q   LE  F++ + L P++K  LAK+LGL+ RQV +WFQN+RAR K KQ E D   L+    NL      L+KE
Sbjct:  132 RLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKE 210          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQAL 539
            R S EQ   LE  F+  + L P++K+ LAK+L L+ RQV +WFQN+RAR K KQ E D   L+    NL      L+KE   L
Sbjct:  165 RLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSEL 247          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQAL 539
            R S +Q   LE  F+  + L P++K+ LAK+L L+PRQV +WFQN+RAR K KQ E D   L+    +L      L+KE + L
Sbjct:  193 RLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKEL 275          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQAL 539
            R S +Q   LE  F+  + L P++KL LAK+L L+ RQV +WFQN+RAR K KQ E D   L+   +NL      L+KE   L
Sbjct:  166 RLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSEL 248          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQAL 539
            R + EQ   LE  F   + L P++K+ LAK+L L+PRQV +WFQN+RAR K KQ E D   L+     L      L++E Q L
Sbjct:  130 RLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQEL 212          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQAL 539
            R + EQ   LE  F   + L P++K+ LAK+L L+PRQV +WFQN+RAR K KQ E D   L+     L      L++E Q L
Sbjct:  130 RLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQEL 212          
The following BLAST results are available for this feature:
BLAST of FC930173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
HOX11_ORYSI2.637e-1146.84Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX2_ORYSJ4.498e-1145.57Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX2_ORYSI4.498e-1145.57Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HAT9_ARATH4.498e-1137.07Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HAT4_ARATH5.874e-1145.57Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
HAT3_ARATH5.874e-1144.58Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
HAT14_ARATH5.874e-1143.37Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]
ATHB4_ARATH5.874e-1144.58Homeobox-leucine zipper protein ATHB-4 OS=Arabidop... [more]
HOX19_ORYSJ7.672e-1143.37Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX19_ORYSI7.672e-1143.37Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC34004E10EF PostHarvC1 Citrus clementina cDNA clone C34004E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930173 ID=FC930173; Name=FC930173; organism=Citrus clementina; type=EST; length=669bp
GCCCCGTCAGTCTTAGAAACAAAACCGTGATATGCACACAATAAGCAAAT
ATAATTAAAACATGCACAGAGCACTTGACACAGCTTAAACATCCCCCAAA
AACACAGCCCCCTCTTTGAATGATTTTTTTTTAAAATTAGAATATACAAA
AATTATCTAGTCACCAGCACAAATTCCGACTAAAGATGTTAGATGGGGGC
GAATATTCTCCGGCGGCTGAGCCATACAGCTGCATGAACGAGATCACAAC
AACAACGACAACCAGAAAGAAGAAGTGCAAGAACAAGAAGAGGTTCAGTG
ATGAACAGATCAGATCATTGGAACTCATGTTTGAAAACGAAACTAGACTC
GAGCCTCGAAAGAAGCTGCAGTTGGCTAAAGAACTTGGGTTGCAGCCTCG
TCAGGTTGCAATATGGTTTCAGAATAAGAGAGCTAGATGGAAGTCGAAGC
AGCTTGAACGAGACTACAACATACTTCAAGCCAATTTCAATAACCTTGCT
TCAAGGTTCGAAGCTCTGAAGAAAGAAAAACAAGCCTTGGTTATTCAGTT
GCAAAAGACGAATGAGTTGTTGCAAAATAAGCCACGACGGGAGGATCAGA
GTCCGAGTGAGAGGCAGTGTTGCGGTCAAGTTGAAGGTGTAAACAGCATG
GAGAAGCGATTGGACAATG
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