FC930174

Overview
NameFC930174
Unique NameFC930174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_PYRSA (Preprotein translocase subunit secY (Fragment) OS=Pyrenomonas salina GN=secY PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  434 LALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            L LSRLG +IP+ GV+ +AF  ++  N +++ L+ FSGGG   +GI +LGIVP+INA IV QL     P L+ LQK  GEAGR+K
Sbjct:   24 LVLSRLGTFIPVPGVDHDAFYQSISTNPIVTFLNIFSGGGFASIGIFALGIVPYINASIVIQLATTSIPNLEKLQKEEGEAGRQK 108          
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_ANTSP (Preprotein translocase subunit secY OS=Antithamnion sp. GN=secY PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 39/85 (45.88%), Postives = 61/85 (71.76%), Query Frame = 2
Query:  434 LALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            L L+R+GI+IP+ G++ + F   + QN +++ L+ F+GGG   +GI +LGIVP+I A I+ QLL ++ P L++LQK  GE GR+K
Sbjct:   18 LFLARVGIFIPISGIDHQTFNNTIQQNGIINFLNIFAGGGFSTIGIFALGIVPYIYASIIIQLLIKLIPYLENLQKEEGEIGRQK 102          
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_GUITH (Preprotein translocase subunit secY OS=Guillardia theta GN=secY PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 39/85 (45.88%), Postives = 58/85 (68.24%), Query Frame = 2
Query:  434 LALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            + +SRLG ++P+ GV+ +AF  ++  N L++ L+ FSGGG   +G+ +LGIVP+INA I+ QL     P L+ LQK  GE GR+K
Sbjct:   24 IVMSRLGTFLPIPGVDHDAFYQSIISNPLVNFLNVFSGGGFASIGVFALGIVPYINASIIVQLATNSIPSLEKLQKEEGELGRQK 108          
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_CYACA (Preprotein translocase subunit secY OS=Cyanidium caldarium GN=secY PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 31/86 (36.05%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  431 YLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            ++AL RLG+++P+ G++++ F  +   N++ + L+ F      +L + +LGI+P+INA I  Q+L+   P L+ LQ   GE G+KK
Sbjct:   17 FIALERLGLFVPIPGIDQKLFSSDYSNNAISNLLNVFDNNQAPKLSVFALGIIPYINATITIQILSSAFPALKKLQSEEGEIGKKK 102          
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_PSEAE (Preprotein translocase subunit secY OS=Pseudomonas aeruginosa GN=secY PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 35/83 (42.17%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  446 RLGIYIPLGGVNREAFVGNLDQN--SLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            R+G +IP+ G+N +       QN  ++LS  + FSGG + R+ I +LGI+P+I+A I+ QL+  I+P+L+ L K+ GE+GR+K
Sbjct:   33 RIGAHIPVPGINPDRLAALFRQNEGTILSLFNMFSGGALERMSIFALGIMPYISASIIMQLMTAISPQLEQL-KKEGESGRRK 114          
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_AQUAE (Preprotein translocase subunit secY OS=Aquifex aeolicus GN=secY PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 2
Query:  446 RLGIYIPLGGVNREAFVGNLD--QNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            RLG +IP+ G+N EA    L   + S+ +  D FSGG +GRL + +LG++P+I+A I+ QLL    P LQ L K  G+ GR K
Sbjct:   29 RLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYK 111          
The following BLAST results are available for this feature:
BLAST of FC930174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SECY_PYRSA2.756e-1751.76Preprotein translocase subunit secY (Fragment) OS=... [more]
SECY_ANTSP1.047e-1645.88Preprotein translocase subunit secY OS=Antithamnio... [more]
SECY_GUITH6.788e-1645.88Preprotein translocase subunit secY OS=Guillardia ... [more]
SECY_CYACA2.669e-1236.05Preprotein translocase subunit secY OS=Cyanidium c... [more]
SECY_PSEAE7.767e-1242.17Preprotein translocase subunit secY OS=Pseudomonas... [more]
SECY_AQUAE2.951e-1144.58Preprotein translocase subunit secY OS=Aquifex aeo... [more]

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Properties
Property NameValue
Genbank descriptionC34004E11EF PostHarvC1 Citrus clementina cDNA clone C34004E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930174 ID=FC930174; Name=FC930174; organism=Citrus clementina; type=EST; length=706bp
GAGATAAGACTTGAAAGGAAAAATGGTGATAAGTGTCAGAGAAATTTCAT
CCTCTTGGCCTCTCTGCTTCAATCCTTCTACTTCCAGGATAAAGACATCT
CCCAGACTCAGAAACTCAATATGCCGAGCCAGTTTTTCTGTTCAAAGACA
ACCCACCAACGCCATCTCTACCAGCACCTCCAAATTTAGCAGTTGTGAGG
GTTCAGTTTTTGATCCCTTGGGTATCAATCCAGATGTATGTTCTCATTTA
AATAGCACTTGGGAAAGTTTTCTAAGCTTGTTATCACCAACATTTGAGAG
CACATCTGGAACCAAAAGGGAAAAATCTTCTTCAGCTCGAGGAGTGGCAG
CTGCAATGGAGGACAGTTCAATTGATTTTGGGGACTTCTTTAAAGGCCCA
TTACCCGGAAAATTTCTCAAGCTGTTGGGGTACTTGGCCCTATCACGACT
TGGAATATATATACCTCTCGGTGGGGTTAATCGAGAAGCTTTTGTAGGAA
ATTTGGATCAGAACAGTTTATTGAGCACGTTGGATTCATTTTCTGGAGGA
GGCATTGGTAGACTTGGAATATGCTCTCTTGGTATTGTTCCCTTTATAAA
TGCACAGATCGTGTTTCAACTTCTTGCCCAAATTAATCCCAAGTTGCAAG
ATCTTCAGAAAAGAAGAGGTGAAGCGGGAAGAAAGAAGTGCTTCAGTACA
CCGATA
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