FC930181

Overview
NameFC930181
Unique NameFC930181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930181 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.223e-41
Identity = 82/134 (61.19%), Postives = 106/134 (79.10%), Query Frame = 3
Query:  267 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQPVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNA 665
            D + FKF PI+ES VSR MT RY  D+  +A +D    GAGS+GLS AY ++KN P++++ IIE  V+PGGG+WLGGQLFSAMV+RKPAH+FL EL I Y+++ +YVV+KHAALF ST++SK+L  PNVKLFNA
Sbjct:   34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNA 167          
BLAST of FC930181 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 43/125 (34.40%), Postives = 70/125 (56.00%), Query Frame = 3
Query:  294 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQPVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAV 668
            ++E  ++R +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W GG  F+ +VV+  A   LDE GI Y+E +    +  A    +TI SK++ +  VK+FN +
Sbjct:    2 LREVTITRAIVESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQDEAREILDEFGIRYEEFEKGYYVADAIEVATTIASKVV-KSGVKIFNMI 124          
BLAST of FC930181 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 3
Query:  294 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQPVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAV 668
            +K+ ++SR +   Y  D++   + D    GAG +G+   Y L+K    ++AI E+ +S GGG W GG  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN V
Sbjct:    2 LKDVVISRAIVESYFKDLLNNLELDVAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKIVVQEEAKEILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMV 124          
BLAST of FC930181 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 34/99 (34.34%), Postives = 63/99 (63.64%), Query Frame = 3
Query:  294 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQPVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVI 590
            +++ ++SR +  RY   +    + D    GAG +GL+ AYEL+KN   ++A+ E+  +PGGG W GG +F+ +V+ K    FL E+ I+Y+ +++++V+
Sbjct:    3 MRDVLISRLIVERYFEKLRNSLELDVAIVGAGPSGLTAAYELAKN-GFRVAVFEERNTPGGGIWGGGMMFNEIVLEKELENFLKEVEIEYEVKEDHIVV 100          
BLAST of FC930181 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 3
Query:  294 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQPVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAV 668
            ++E  +SR +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W GG  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN +
Sbjct:    2 LREVTISRAIIESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQEEAREILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMI 124          
BLAST of FC930181 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.334e-13
Identity = 41/125 (32.80%), Postives = 67/125 (53.60%), Query Frame = 3
Query:  294 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQPVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAV 668
            ++E  +SR +   Y  D++     D    GAG +G+   Y L+K    ++AI E+ +S GGG W G   F+ +VV++ A   LDE G+DY +  N + +  +    ST+ SK + +   K+FN V
Sbjct:    1 MREIEISRAIVEAYFNDLLQNLQLDIAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSVGGGIWGGAMGFNRVVVQESAREILDEFGVDYSQVGNGLYVLDSIELASTLASKAV-KAGAKIFNMV 123          
BLAST of FC930181 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 42/130 (32.31%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  282 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQPVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVA 671
            K D IK   +SR +   YM D++ Y + D    G G +GL+  Y L++   +++A+ E+ +S GGG W GG +F+ +VV+      LDE GI  +  D    +  +   TST+ S+   +  +K+FN ++
Sbjct:    2 KLDDIK---ISRAIVEGYMEDLLDYMEMDVAIGGGGPSGLTAGYYLAR-AGLKVALFERKLSIGGGMWGGGMMFNKIVVQDEGREILDEFGIRSEPYDEGYHVADSVEATSTLCSR-ACQAGLKIFNLMS 126          
BLAST of FC930181 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 38/107 (35.51%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  285 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQPVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI--DYDEQDNYVVIKHA 599
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE+    GGG WLGG L + + VR PA   LD+LG+  +YDE+++ + +  A
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADA 111          
BLAST of FC930181 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 38/107 (35.51%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  285 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQPVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI--DYDEQDNYVVIKHA 599
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE+    GGG WLGG L + + VR PA   LD+LG+  +YDE+++ + +  A
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADA 111          
The following BLAST results are available for this feature:
BLAST of FC930181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
THI4_YEAST3.223e-4161.19Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRHO9.772e-1434.40Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU2.177e-1334.40Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_THEMA2.843e-1334.34Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_PYRAB3.713e-1334.40Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO6.334e-1332.80Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_METTH8.272e-1332.31Putative thiazole biosynthetic enzyme OS=Methanoba... [more]
THI4_HALSA1.560e-1135.51Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS31.560e-1135.51Putative thiazole biosynthetic enzyme OS=Halobacte... [more]

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Properties
Property NameValue
Genbank descriptionC34004F06EF PostHarvC1 Citrus clementina cDNA clone C34004F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930181 ID=FC930181; Name=FC930181; organism=Citrus clementina; type=EST; length=672bp
GTCACCAGTCATCATCACTGCTGCAAATCAAATTACTTCTCATTATCAAA
CTTCTAAGCAGCAGGGGAAGGAGGGGTTAAAAAAAAAAAAACATGGCAGC
CATGACTTCTACAGCTTTCGCTCCTTCAGTTTCGTCCACCACCAATAAGC
TCTTTGACTCATCCTTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGT
CTTCAACCCATCAAATCTTCTCGTCCCAACAACTTGTCCATTTCTGCTTC
TGCTTCTCCTCCTTATGACTTGAACACTTTCAAGTTTGACCCCATCAAAG
AATCCATTGTTTCTCGTGAAATGACACGCAGGTACATGACGGACATGATC
ACTTATGCTGACACTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCT
CTCTTGTGCTTATGAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTA
TCGAACAGCCTGTTAGCCCCGGCGGTGGCGCGTGGCTCGGTGGACAGCTC
TTCTCTGCCATGGTTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCT
TGGCATCGACTACGATGAGCAAGACAACTATGTTGTGATCAAGCATGCAG
CGCTGTTCACCTCCACTATAATGAGCAAGCTCCTGGCCCGCCCCAACGTC
AAGCTCTTTAATGCAGTGGCAG
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