FC930187

Overview
NameFC930187
Unique NameFC930187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14135 contig Ccv1_Contig14135:23..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL5_TOXCI (60S ribosomal protein L5 OS=Toxoptera citricida GN=RpL5 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.521e-66
Identity = 127/210 (60.48%), Postives = 154/210 (73.33%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPT-ENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K  K+K YFKRYQVK+KRRREGKTDY AR RLI QDKNKY+TPKYR +VRF+N+DIT Q+  + I GD ++ +AY+HELP+YG++VGLTNYAAAYCTGLL+ARR+LK L +D  YEG  EA GE+Y VEP  E    FR  LDVGL+KT+TG RVF            IPHS KRF G+  ++K+  AE HRK+I   HVA YMR L E+
Sbjct:    5 KVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYDTPKYRLIVRFSNRDITCQVAHSRIEGDKIVCAAYSHELPKYGVKVGLTNYAAAYCTGLLVARRLLKKLGLDRLYEGLKEANGEEYYVEPADEGPNAFRCNLDVGLMKTSTGARVFGAMKGAVDGGFNIPHSVKRFPGYDAEAKEYSAETHRKHILGLHVAEYMRKLEEE 214          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL5_MOUSE (60S ribosomal protein L5 OS=Mus musculus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 7.211e-66
Identity = 125/210 (59.52%), Postives = 153/210 (72.86%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K  K+KAYFKRYQV+++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE  G +Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME+
Sbjct:    5 KVVKNKAYFKRYQVRFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGGEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEE 214          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.211e-66
Identity = 123/210 (58.57%), Postives = 155/210 (73.81%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K  K+K YFKRYQVK+KRRREGKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+T Q+  + I GD ++ +AY+HELPRYG++VGLTNYAAAY TGLLLARR+L+ L +D  Y G  + TG++Y+VEP +N    FR  LDVGL +TTTG RVF            +PHS KRF G+  +SK+ +AEVHR +I+  HVA YMR+L +D
Sbjct:    5 KVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGLLLARRLLQRLGLDTLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQD 214          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL5_ANOGA (60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 7.211e-66
Identity = 125/210 (59.52%), Postives = 154/210 (73.33%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPT-ENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K  K+K YFKRYQV+++RRREGKTDY AR RLI QDKNKYNTPK+R +VR +N+DIT QI  A I GD ++ +AY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP  E    FR  LDVGL +TTTG RVF            IPHS KRF G+S ++K  +AE+HR +I+  HVA YMRTL E+
Sbjct:    5 KVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTLEEE 214          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL5_DUNSA (60S ribosomal protein L5 OS=Dunaliella salina GN=RPL5 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.098e-65
Identity = 121/210 (57.62%), Postives = 156/210 (74.29%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K  K+  YF RYQVKY+RRR+GKTDYRAR+RL+ QDKNKYNT KYR VVRF+NK++T QI+ ++I GD+V+A+AY+ ELP YGL+VGLTNY+AAYC GLL+ARR+L  L +   Y+G  E  GEDY+VEP E+  +PF  LLD GL +T+TG++VF            IPH+EKRF G++   K+LD EV +KYIY GHVA Y  T+ E+
Sbjct:    5 KVVKTSPYFSRYQVKYRRRRQGKTDYRARLRLVRQDKNKYNTHKYRLVVRFSNKNVTCQIVYSTIQGDVVMAAAYSKELPNYGLKVGLTNYSAAYCVGLLVARRILTKLNLADTYKGQEEPDGEDYNVEPVEDGPKPFYCLLDTGLKRTSTGSKVFAAMKGALDGGLDIPHNEKRFVGYA--DKKLDTEVLQKYIYGGHVAEYQETMQEE 212          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.360e-64
Identity = 120/210 (57.14%), Postives = 153/210 (72.86%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEP-TENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K  K+K YFKR+QVKYKRRREGKTDY AR RL  QDK+KYNTPKYR +VR +NKDIT QI  + I GD ++ +AY+HELP+YG++VGLTNYAAAYCTGLLLARR+LK L++D  Y G  E  G++Y+VE   +    FR  LD GL++TTTG R+F            IPHS KRF G+  +SK  +A+VHR++I+  H+A YM+TL E+
Sbjct:    5 KVVKNKQYFKRFQVKYKRRREGKTDYYARKRLTVQDKSKYNTPKYRLIVRLSNKDITCQIAYSRIEGDRIVCAAYSHELPKYGIKVGLTNYAAAYCTGLLLARRLLKQLKLDTLYTGTTEVDGDEYNVEEHDDGPGAFRCYLDTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEEN 214          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.749e-64
Identity = 127/213 (59.62%), Postives = 149/213 (69.95%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTE----NRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K  K+ AY+ R+Q KYKRRREGKTDY AR RLI Q KNKYN PKYR VVRFTN+DI  QI+S+ I GD V ASAY+HEL  YG+E GLTN+AAAY TGLLLARRVLK L +D  ++G  EA GE    E  E     RRPF+A LDVGL +T+TG RVF            IPHSE RF G+  +S++LDAE  +KYI+ GHVA YM TL +D
Sbjct:    5 KLVKNSAYYSRFQTKYKRRREGKTDYYARKRLITQAKNKYNAPKYRLVVRFTNRDIILQIVSSEITGDKVFASAYSHELKAYGIEHGLTNWAAAYATGLLLARRVLKKLGLDETFKGVEEADGEYKLTEAAETDDGERRPFKAFLDVGLARTSTGARVFGAMKGASDGGIFIPHSENRFPGYDMESEELDAETLKKYIFGGHVAEYMETLADD 217          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL5_THEPA (60S ribosomal protein L5 OS=Theileria parva GN=RPL5 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.407e-61
Identity = 122/210 (58.10%), Postives = 153/210 (72.86%), Query Frame = 2
Query:   92 KSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSK---QLDAEVHRKYIYCGHVAAYMRTLMED 709
            K+KAYF+R+QVK++RRREGKTDY AR RL+ QDKNKY++PKYR VVR TNK +  QI+S+++ GD V ASA + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D+++ G VEA GE Y VE  +N RRPF+ALLDVG+   TTGNRVF            +PHSEKRF G+S D +     DA+ HR  I+  HVA YM  L E+
Sbjct:    8 KNKAYFRRFQVKFRRRREGKTDYYARRRLVAQDKNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEEDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGSYDAQAHRDRIFGTHVANYMEYLKEE 217          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL5_THEAN (60S ribosomal protein L5 OS=Theileria annulata GN=RPL5 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.407e-61
Identity = 122/210 (58.10%), Postives = 153/210 (72.86%), Query Frame = 2
Query:   92 KSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQ---LDAEVHRKYIYCGHVAAYMRTLMED 709
            K+KAYF+R+QVK++RRREGKTDY AR RL+ QDKNKY++PKYR VVR TNK +  QI+S+++ GD V ASA + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D+++ G VEA GE Y VE  +N RRPF+ALLDVG+   TTGNRVF            +PHSEKRF G+S D +     DA+ HR  I+  HVA YM  L E+
Sbjct:    8 KNKAYFRRFQVKFRRRREGKTDYYARRRLVAQDKNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEDDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGTYDAQAHRDRIFGTHVANYMEYLKEE 217          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.191e-60
Identity = 123/214 (57.48%), Postives = 151/214 (70.56%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEP-TENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLD----AEVHRKYIYCGHVAAYMRTLMED 709
            KA K+KAYFKR+QVKY+RRREGKTDY AR RLI QDKNKYN PKYRFVVR TN  +  Q++ A++ GD ++ SA + EL RYG++VGLTNY+AAY TGLLLARR+LK   +  E++G  + +GE+Y +E  +E RRPF+ +LDVG+V TT GNRVF            IPHS KRF GF+K     D     EVHR  IY  HVA YMRTL E+
Sbjct:    5 KAIKNKAYFKRFQVKYRRRREGKTDYAARRRLILQDKNKYNAPKYRFVVRVTNSRVLCQVMYATLQGDRLVCSADSQELTRYGIKVGLTNYSAAYATGLLLARRLLKQKGLADEFKGLEKPSGEEYHIEEVSEERRPFKCVLDVGIVATTVGNRVFGAMKGACDGGLHIPHSNKRFPGFTKGEDGADDSYNPEVHRARIYGLHVAEYMRTLKEE 218          
The following BLAST results are available for this feature:
BLAST of FC930187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RL5_TOXCI5.521e-6660.4860S ribosomal protein L5 OS=Toxoptera citricida GN... [more]
RL5_MOUSE7.211e-6659.5260S ribosomal protein L5 OS=Mus musculus GN=Rpl5 P... [more]
RL5_BOMMO7.211e-6658.5760S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
RL5_ANOGA7.211e-6659.5260S ribosomal protein L5 OS=Anopheles gambiae GN=R... [more]
RL5_DUNSA2.098e-6557.6260S ribosomal protein L5 OS=Dunaliella salina GN=R... [more]
RL5_LYSTE1.360e-6457.1460S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_NEUCR6.749e-6459.6260S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]
RL5_THEPA1.407e-6158.1060S ribosomal protein L5 OS=Theileria parva GN=RPL... [more]
RL5_THEAN1.407e-6158.1060S ribosomal protein L5 OS=Theileria annulata GN=... [more]
RL5_EIMTE1.191e-6057.4860S ribosomal protein L5 OS=Eimeria tenella GN=RPL... [more]

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Properties
Property NameValue
Genbank descriptionC34004F12EF PostHarvC1 Citrus clementina cDNA clone C34004F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930187 ID=FC930187; Name=FC930187; organism=Citrus clementina; type=EST; length=709bp
GATTGGATTTAGCTCGCGGCTCCTTCACAACTTCTCGAACTCTGCTGCTT
CTACACTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAA
GCTTACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAA
GACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGT
ACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGATATC
ACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATC
TGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTA
ATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTG
AAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAACAGG
AGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCC
TGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGC
GCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAA
GAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAAGTTC
ACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGACTTTG
ATGGAAGAT
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