FC930187

Overview
NameFC930187
Unique NameFC930187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_HALWD (50S ribosomal protein L18P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 57/192 (29.69%), Postives = 81/192 (42.19%), Query Frame = 2
Query:  113 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAY 688
            RY+V  +RRRE +TDY  R+RL+   K        R V R +N+ + AQ+I+    GD    +A +  L  YG E    N  +AY TG L   R ++               G D             A+LD+GL   T GN+VF            IPH+E   A +S++  +             H+AAY
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNRHVRAQLITPGPDGDETHVAASSEHLSEYGWEAPTGNLPSAYLTGYLAGMRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFVVQEGAIDAGVSIPHNESVLADWSRNRGE-------------HIAAY 151          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_METJA (50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 59/192 (30.73%), Postives = 87/192 (45.31%), Query Frame = 2
Query:  116 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPH------SEKRFAG-----FSKDSKQLDAEVHRK 658
            Y+VK++RRRE KTDYR R++L+   K        R V R T     AQI+     GD  + SA++ EL + G +    N  +AY TG LL ++ L         +G+ E                  A+LD+GL + T GN +F            IPH      SE+R  G     +++  K+ D E ++K
Sbjct:    7 YRVKFRRRREAKTDYRKRLKLLLSRKP-------RLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKLGYKGHTGNLPSAYLTGYLLGKKALA--------KGYTE------------------AVLDIGLHRATKGNAIFAILKGALDAGMEIPHGEEILPSEERIRGEHIKAYAEMLKEQDEERYKK 165          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_PYRAE (50S ribosomal protein L18P OS=Pyrobaculum aerophilum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 53/163 (32.52%), Postives = 71/163 (43.56%), Query Frame = 2
Query:  113 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 601
            RY+V ++RRREG T+YR R +L+   K        R VVR TNK I AQI+ A   GD+ +  A    L ++G      N AAAY  GL++  +                             RR   A+LD+GL +   G RVF            IPH E+
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQIVVAKPQGDVTIVGADTRILAKFGWRGDENNVAAAYLLGLVVGYK--------------------------ARARRVEEAILDIGLHRPAPGARVFAVLKGALDAGLKIPHGEE 135          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 53/163 (32.52%), Postives = 72/163 (44.17%), Query Frame = 2
Query:  113 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 601
            RY+V ++RRREG T+YR R RLI   K        R VVR TNK I AQ++ A   GD+ +       L ++G      N +AAY  GL+            A Y+  +    E              A+LD+GL +   G+RVF            IPH E+
Sbjct:    6 RYKVPFRRRREGLTNYRKRRRLILSRKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLV------------AGYKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEE 135          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_METAC (50S ribosomal protein L18P OS=Methanosarcina acetivorans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 56/186 (30.11%), Postives = 89/186 (47.85%), Query Frame = 2
Query:  113 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF-----------AGFSKDSKQL 637
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR +++++  Q+I+ +  GDI  +SA ++EL +YG      N  AAY TGLL     LK L+    YEG                      +LD+GL  ++ G+RV+            IP S + F           AG+ ++S  L
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLLSRQD-------RVVVRKSSRNVQIQLIAPTPDGDITYSSAVSNELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEG---------------------GILDIGLQASSAGSRVYAALKGVVDSGFEIPCSPEVFPPDERIRGEHIAGYREESSDL 158          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_SULTO (50S ribosomal protein L18P OS=Sulfolobus tokodaii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 53/143 (37.06%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  101 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRAL---LDVGL 517
            A+   Y+VKY+RRREGKT+Y  R   +  +         R VVR TNK I AQI   +  GD+++ +A++ EL  ++G +  L N  AAY TG LL  R LK         G  EA  +     P +  R F A+   +D GL
Sbjct:    2 AHGPNYRVKYRRRREGKTNYYKRYTYVINNTT-------RLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALK--------AGIKEAVADIGLFVPVKGSRIFTAIKGAIDAGL 129          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 2
Query:  113 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLK 403
            RY+V  +RRREGKT+Y  R +++            RFVVR T K I  QI++A   GDI +A+A++ EL  +YG   GL N  AAY TGLL A R LK
Sbjct:    6 RYKVPKRRRREGKTNYYKRYKMVLSGHP-------RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK 96          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_HALLT (50S ribosomal protein L18P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 57/198 (28.79%), Postives = 82/198 (41.41%), Query Frame = 2
Query:  113 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLME 706
            RY+V  +RRRE +TDY  R+RL+   K        R V R +N  + AQ+++    GD   A+A + EL  YG +    N  +AY TG L   R      +DA  +                      A+LD+GL   T GN+ F            IPH++   A +S+   +             H+AAY   L E
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNAHVRAQLVTPGSDGDETHAAASSEELGEYGWDAPTGNLPSAYLTGYLAGARA-----VDAGLD---------------------EAVLDIGLNTATPGNKTFAVQEGAIDAGLEIPHNDDVLADWSRTRGE-------------HIAAYAEQLDE 157          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_PYRAR (50S ribosomal protein L18P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 54/163 (33.13%), Postives = 73/163 (44.79%), Query Frame = 2
Query:  113 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 601
            RY+V ++RRREG T+YR R +L+   K        R VVR TNK I AQI+ A   GD  +A A    L ++G      N +AAY  GL++             Y+  +    E              A+LD+GL + T G RVF            IPH E+
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLVISKKP-------RLVVRKTNKHIIAQIVVAKPIGDETVAGADTRILTKFGWRGDENNTSAAYLLGLVVG------------YKARMRGVEE--------------AILDIGLHRPTPGARVFAVLKGALDAGLKIPHGEE 135          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_NANEQ (50S ribosomal protein L18P OS=Nanoarchaeum equitans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 52/166 (31.33%), Postives = 77/166 (46.39%), Query Frame = 2
Query:  101 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSE 598
            A+  RY+V ++RRREGKT YR R++L+   K        R VVR  N +I AQ++     GD V+ + +++ L +YG +    N  +AY  GL+     LK         G+ E                  A+LD+G  K+T GN ++            IPHSE
Sbjct:    2 AHGPRYRVPFRRRREGKTVYRKRLKLLLSGKP-------RLVVRRFNSNILAQLVEYDPKGDRVIFTIHSNVLKKYGWKGHRGNLPSAYLVGLIAGYEALK--------RGYKE------------------AVLDIGRYKSTKGNALYAVLKGALDAGLNIPHSE 134          
The following BLAST results are available for this feature:
BLAST of FC930187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RL18_HALWD5.423e-1329.6950S ribosomal protein L18P OS=Haloquadratum walsby... [more]
RL18_METJA9.250e-1330.7350S ribosomal protein L18P OS=Methanocaldococcus j... [more]
RL18_PYRAE1.578e-1232.5250S ribosomal protein L18P OS=Pyrobaculum aerophil... [more]
RL18_THENV2.061e-1232.5250S ribosomal protein L18P OS=Thermoproteus neutro... [more]
RL18_METAC2.061e-1230.1150S ribosomal protein L18P OS=Methanosarcina aceti... [more]
RL18_SULTO2.691e-1237.0650S ribosomal protein L18P OS=Sulfolobus tokodaii ... [more]
RL18_STAMF2.691e-1246.9450S ribosomal protein L18P OS=Staphylothermus mari... [more]
RL18_HALLT2.691e-1228.7950S ribosomal protein L18P OS=Halorubrum lacusprof... [more]
RL18_PYRAR3.515e-1233.1350S ribosomal protein L18P OS=Pyrobaculum arsenati... [more]
RL18_NANEQ3.515e-1231.3350S ribosomal protein L18P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionC34004F12EF PostHarvC1 Citrus clementina cDNA clone C34004F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930187 ID=FC930187; Name=FC930187; organism=Citrus clementina; type=EST; length=709bp
GATTGGATTTAGCTCGCGGCTCCTTCACAACTTCTCGAACTCTGCTGCTT
CTACACTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAA
GCTTACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAA
GACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGT
ACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGATATC
ACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATC
TGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTA
ATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTG
AAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAACAGG
AGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCC
TGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGC
GCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAA
GAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAAGTTC
ACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGACTTTG
ATGGAAGAT
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