FC930187

Overview
NameFC930187
Unique NameFC930187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_PYRIL (50S ribosomal protein L18P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 50/163 (30.67%), Postives = 72/163 (44.17%), Query Frame = 2
Query:  113 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 601
            RY+V ++RRREG T+YR R +L+   K        R VVR TNK I AQ++ A   GD+ +       L ++G +    N  AAY  GL++             Y+  +    E              A+LD+GL +   G+RVF            IPH E+
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGIDTRALAKFGWKGDENNTPAAYLLGLIVG------------YKARIRGVKE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEE 135          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 49/138 (35.51%), Postives = 71/138 (51.45%), Query Frame = 2
Query:  113 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVK 523
            RY+V  +RRREGKT+Y  R R+I            RF+VR T   I  Q+ +A   GD+++A+A+++EL  R+G + G  N +AAY TGLL A R L+               G +Y+V      RP +  L    +K
Sbjct:    6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAALRALE--------------KGVEYAVPDIGLHRPVKGALVFAAIK 122          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 52/138 (37.68%), Postives = 71/138 (51.45%), Query Frame = 2
Query:  113 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRAL---LDVGL 517
            RY+V  KRRREGKT+Y  R +LI   K        R VVR  ++    QI  A+  GD+V+ASA+++EL +YG +    N  A Y  G L A++ LK        +G  EA  +     P +  R F A+   LD GL
Sbjct:    6 RYRVPLKRRREGKTNYYKRRKLIISGKP-------RLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTEAIVDIGLHRPVKASRVFAAVKGALDAGL 128          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_METVS (50S ribosomal protein L18P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 60/199 (30.15%), Postives = 89/199 (44.72%), Query Frame = 2
Query:  113 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            +++V ++RRREGKTD+R R+ L+   K        R V R +  +I AQ+++    GDIVL SA++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP  E+  A    D ++L+           H+  Y   L ED
Sbjct:    6 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLNGT---------HIKQYAELLKED 158          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 60/199 (30.15%), Postives = 89/199 (44.72%), Query Frame = 2
Query:  113 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            +++V ++RRREGKTD+R R+ L+   K        R V R +  +I AQ+++    GDIVL SA++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP  E+  A    D ++L+           H+  Y   L ED
Sbjct:    8 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLNGT---------HIKQYAELLKED 160          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_METBF (50S ribosomal protein L18P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 50/165 (30.30%), Postives = 79/165 (47.88%), Query Frame = 2
Query:  113 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 607
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR + +++  Q+I+ +  GDI  +SA + EL +YG      N  AAY TGLL   + LK       YEG                      +LD+GL  ++ G+RV+            +P S + F
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLISKQD-------RVVVRKSARNVQIQLIAPTPEGDITYSSAVSSELAKYGYTGVTGNTTAAYLTGLLFGLKSLK-----KGYEG---------------------GILDIGLQASSAGSRVYAALKGIVDSGFEVPCSPEVF 137          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 56/166 (33.73%), Postives = 79/166 (47.59%), Query Frame = 2
Query:  113 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 607
            RY+V ++RRREGKTDY  R++LI        + K R VVR T+  + AQI+     GD VLA+A + EL + +G +    N +AAY TGLL+  +           E  VE                  A+LD+GL +   G+RV+            +P SE  F
Sbjct:    6 RYKVAFRRRREGKTDYHQRLKLI-------VSRKPRLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVF 138          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_METMA (50S ribosomal protein L18P OS=Methanosarcina mazei GN=rpl18p PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 51/165 (30.91%), Postives = 79/165 (47.88%), Query Frame = 2
Query:  113 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 607
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR + +++  Q+++ +  GDI  +SA + EL +YG      N  AAY TGLL     LK L+    YEG                      +LD+GL  ++ G+RV+            IP S   F
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLLSGQD-------RVVVRKSARNVQIQLLAPTPEGDITYSSAVSSELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEG---------------------GILDIGLQASSAGSRVYAALKGIVDSGFEIPCSSDVF 137          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_THESM (50S ribosomal protein L18P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 61/204 (29.90%), Postives = 88/204 (43.14%), Query Frame = 2
Query:  101 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            A+  RY+V ++RRREGKT+Y  R+ L+   K        R VVR T     AQI+  +  GD  + SA+  EL R +G +    N  +AY  GLL+     K LE   E                        A+LD+GL   T G+ +F            +PHSE+ + G        +  ++ K     H+A Y + L ED
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKTLNHHVAQIVLYAPEGDKTVVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIG---YKALEKGIE-----------------------EAILDIGLHPPTKGSSIFAVLKGAVDAGLNVPHSEEIYPG--------EERINGK-----HIAEYAKMLKED 159          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL18_METST (50S ribosomal protein L18P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 44/134 (32.84%), Postives = 66/134 (49.25%), Query Frame = 2
Query:  116 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGL 517
            Y+V++KRRREGKT+Y  R +L++ DK        R VVR T+     Q++     GD  L SA +  L  +G      N +AAY TG L  ++ L     +  Y+  +   G   S++ T+     +  LD GL
Sbjct:    7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTITQLVKIGENGDETLVSATSKNLKEFGWLGNGKNTSAAYLTGYLFGKKAL-----NEGYDETILDIGVQPSIKGTKIYAVLKGALDAGL 128          
The following BLAST results are available for this feature:
BLAST of FC930187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RL18_PYRIL5.996e-1230.6750S ribosomal protein L18P OS=Pyrobaculum islandic... [more]
RL18_DESK15.996e-1235.5150S ribosomal protein L18P OS=Desulfurococcus kamc... [more]
RL18_THEPD7.830e-1237.6850S ribosomal protein L18P OS=Thermofilum pendens ... [more]
RL18_METVS7.830e-1230.1550S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_METVA7.830e-1230.1550S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_METBF7.830e-1230.3050S ribosomal protein L18P OS=Methanosarcina barke... [more]
RL18_UNCMA1.023e-1133.7350S ribosomal protein L18P OS=Uncultured methanoge... [more]
RL18_METMA1.336e-1130.9150S ribosomal protein L18P OS=Methanosarcina mazei... [more]
RL18_THESM2.278e-1129.9050S ribosomal protein L18P OS=Thermococcus sibiric... [more]
RL18_METST8.658e-1132.8450S ribosomal protein L18P OS=Methanosphaera stadt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34004F12EF PostHarvC1 Citrus clementina cDNA clone C34004F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930187 ID=FC930187; Name=FC930187; organism=Citrus clementina; type=EST; length=709bp
GATTGGATTTAGCTCGCGGCTCCTTCACAACTTCTCGAACTCTGCTGCTT
CTACACTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAA
GCTTACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAA
GACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGT
ACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGATATC
ACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATC
TGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTA
ATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTG
AAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAACAGG
AGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCC
TGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGC
GCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAA
GAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAAGTTC
ACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGACTTTG
ATGGAAGAT
back to top