FC930188

Overview
NameFC930188
Unique NameFC930188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLS (Chaperone protein dnaJ OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  184 YKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYF--TSGGPG 456
            Y+ LGV++NASQ EI+KA+ K+S +YHPD NK + A++K+ E+  AY+ LSDE+KR  YD YG+   + GF  G  G   G++ F   SGG G
Sbjct:    7 YERLGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEDKYKEVQEAYETLSDEQKRAAYDQYGEAGANGGFGGGGFGGASGFSGFGGASGGFG 99          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLM (Chaperone protein dnaJ OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  184 YKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYF--TSGGPG 456
            Y+ LGV++NASQ EI+KA+ K+S +YHPD NK + A++K+ E+  AY+ LSDE+KR  YD YG+   + GF  G  G   G++ F   SGG G
Sbjct:    7 YERLGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEDKYKEVQEAYETLSDEQKRAAYDQYGEAGANGGFGGGGFGGASGFSGFGGASGGFG 99          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DJC16_HUMAN (DnaJ homolog subfamily C member 16 OS=Homo sapiens GN=DNAJC16 PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYF 438
            DPY+VLGV R ASQ +I+KA+ KL+ ++HPDKNK+  A++KF +I+ AY+ILS+EEKR  YD YGD   + G+       +  + +F
Sbjct:   29 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISKAYEILSNEEKRSNYDQYGDAGENQGYQKQQQQREYRFRHF 115          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LYSSC (Chaperone protein dnaJ OS=Lysinibacillus sphaericus (strain C3-41) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.248e-18
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQ-GGY-----TYFTSGGPGQSQFTSRPGE 486
            D Y+VLG+ ++A++ EI+KA+ KLS QYHPD NK   A EKF EI  AY++LSD++K+ +YD +G E  + GF  G  G   GG+     ++F  GG  Q     R G+
Sbjct:    5 DYYEVLGLTKSATKDEIKKAYRKLSKQYHPDLNKEPGADEKFKEIAEAYEVLSDDQKKARYDQFGHEDPNAGFGGGFGGGGFGGFEDIFSSFFGGGGRRQDPNAPRKGD 113          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNJA3_MOUSE (DnaJ homolog subfamily A member 3, mitochondrial OS=Mus musculus GN=Dnaja3 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 53/119 (44.54%), Postives = 77/119 (64.71%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQ----------SQFTSRP-GEWQNM 498
            D Y++LGV RNASQ++I+KA+++L+ +YHPD NK +  A+EKF+++  AY++LSDE KRK+YD Y    GS GFD G   +  GY     GGP             +F+S P G++QN+
Sbjct:   93 DYYQILGVPRNASQKDIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAY----GSAGFDPGTSSSGQGY---WRGGPSVDPEELFRKIFGEFSSSPFGDFQNV 204          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMH (Chaperone protein dnaJ OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 51/112 (45.54%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGG----------YTYFTSGGPGQSQFTSRPG 483
            D Y+VLG+ ++AS  EI+KA+ KLS QYHPD NK   A EKF EI+ AY+ LSD +KR +YD YG    + GF  G  G  GG           T+F  GG  Q     R G
Sbjct:    5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGAGGGFGGGGFSGFEDIFDTFFGGGGRQQDPNAPRQG 116          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LISIN (Chaperone protein dnaJ OS=Listeria innocua GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 51/112 (45.54%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGG----------YTYFTSGGPGQSQFTSRPG 483
            D Y+VLG+ ++AS  EI+KA+ KLS QYHPD NK   A EKF EI+ AY+ LSD +KR +YD YG    + GF  G  G  GG           T+F  GG  Q     R G
Sbjct:    5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGAGGGFGGGGFSGFEDIFDTFFGGGGRQQDPNAPRQG 116          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LACPL (Chaperone protein dnaJ OS=Lactobacillus plantarum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPG 456
            D YKVLGVE++ASQ EI+KA+ KLS +YHPD N    A+EKF  +N AY+ L D +KR +YD +G   G  GF  G  G  GG  +   GG G
Sbjct:    5 DLYKVLGVEKDASQDEIKKAYRKLSKKYHPDLNHEPGAEEKFKAVNEAYETLGDAQKRAQYDQFGSTGGQQGF--GGAGGFGGQDFGGFGGGG 95          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLC (Chaperone protein dnaJ OS=Lactococcus lactis subsp. cremoris GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  184 YKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYF--TSGGPG 456
            Y+ LGV++NASQ EI+KA+ K+S +YHPD NK + A++K+ E+  AY+ LSDE+KR  YD YG+   + GF  G  G   G++ F   SGG G
Sbjct:    7 YERLGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEDKYKEVQEAYETLSDEQKRAAYDQYGEAGRNGGFGGGGFGGASGFSGFGGRSGGFG 99          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DJC16_RAT (DnaJ homolog subfamily C member 16 OS=Rattus norvegicus GN=Dnajc16 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 41/73 (56.16%), Postives = 57/73 (78.08%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGF 396
            DPY+VLGV R ASQ +I+KA+ KL+ ++HPDKNK+  A++KF +I+ AY+ILS+EEKR  YD YGD   + G+
Sbjct:   29 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISKAYEILSNEEKRTNYDHYGDAGENQGY 101          
The following BLAST results are available for this feature:
BLAST of FC930188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_LACLS1.318e-1848.39Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DNAJ_LACLM1.318e-1848.39Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DJC16_HUMAN1.318e-1848.28DnaJ homolog subfamily C member 16 OS=Homo sapiens... [more]
DNAJ_LYSSC2.248e-1844.04Chaperone protein dnaJ OS=Lysinibacillus sphaericu... [more]
DNJA3_MOUSE2.935e-1844.54DnaJ homolog subfamily A member 3, mitochondrial O... [more]
DNAJ_LISMH2.935e-1845.54Chaperone protein dnaJ OS=Listeria monocytogenes s... [more]
DNAJ_LISIN2.935e-1845.54Chaperone protein dnaJ OS=Listeria innocua GN=dnaJ... [more]
DNAJ_LACPL2.935e-1850.54Chaperone protein dnaJ OS=Lactobacillus plantarum ... [more]
DNAJ_LACLC2.935e-1848.39Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DJC16_RAT2.935e-1856.16DnaJ homolog subfamily C member 16 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionC34004G01EF PostHarvC1 Citrus clementina cDNA clone C34004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930188 ID=FC930188; Name=FC930188; organism=Citrus clementina; type=EST; length=669bp
GACCCCGTCGCTATTGTTATTAATTGTGATCTTTTTCATAACGCACTTCA
CTCCGTTCAATAATAAACCTCTAAAATCTGTAGTGAGATGCAAGGTGCAA
AAATGAAGGTTCGTTTCGCACTATCGATTTTTCTGTTTTCAACGCTTTTG
ATCTTCAACGCGAAAGCCAAAACCGTCGATCCGTACAAGGTTCTTGGTGT
TGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAAGCTTTCCACAAGCTCT
CTCTTCAATATCACCCGGACAAGAACAAAAATAAGGCCGCTCAGGAGAAG
TTCGCTGAGATTAATAATGCATATGATATTTTATCTGATGAAGAGAAGAG
GAAAAAATATGATTTGTATGGGGATGAGAAGGGCAGTCCTGGATTTGATG
CTGGGCATCCTGGGAATCAAGGTGGGTATACATACTTCACAAGTGGTGGA
CCGGGACAAAGCCAGTTTACCTCTAGACCTGGTGAATGGCAGAATATGGG
GGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCCTTTGGCGGTACTGGTG
GTTCAAGTTCATTTGGTTTTGGTCTAGATGATATCTTCTCTGACTTTTTT
GGCAGTAGTTTTGGAGGAGGACGCCAATTTGGTGGTTTTAGTGGTTCAAC
TGGTTCTCAGTCTCAATCT
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