FC930188

Overview
NameFC930188
Unique NameFC930188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ERYRH (Chaperone protein dnaJ OS=Erysipelothrix rhusiopathiae GN=dnaJ PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 43/114 (37.72%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGD---EKGSPGFDAGHPGNQGGY-----TYFTSGGPGQSQFTSRPGEWQN 495
            D Y++LGV ++A+  EI+KA+ +L+ +YHPD NK   A+ KF E+  AY++LSD +KR  YD +G    ++G+ GF  G  G    +     ++F  GG GQ +  + P + Q+
Sbjct:    6 DFYEILGVSKSATDAEIKKAYRQLAKKYHPDINKEDGAEAKFKEVQEAYEVLSDSQKRANYDQFGHAAFDQGAGGFGGGFSGGFDDFGDIFSSFFGGGGGGQRRNPNGPMKGQD 119          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_BRECH (Chaperone protein dnaJ OS=Brevibacillus choshinensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 46/106 (43.40%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEK-----GSPGFDAGHPGNQGGYTYFTSGGPGQSQFTSRP 480
            D Y+VLGV + A   EI+KA+ KL+ QYHPD NK   A+EKF E+  AYD+LS+ +KR +YD +G +      G  GFDA   G  G       GG G+    + P
Sbjct:    4 DYYEVLGVGKGADADEIKKAYRKLARQYHPDVNKAADAEEKFKEVKEAYDVLSEPQKRAQYDRFGHQDPNQGFGGGGFDASGMGGFGDIFDMFFGGGGRRANPNAP 109          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_BACSH (Chaperone protein dnaJ OS=Bacillus sphaericus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQ-GGY-----TYFTSGGPGQSQFTSRPGE 486
            D Y+VLG+ ++    EI+KA+ KLS QYHPD NK   A EKF EI  AY++LSD++K+ +YD +G E  + GF  G  G   GG+     ++F  GG  Q     R G+
Sbjct:    5 DYYEVLGLTKD----EIKKAYRKLSKQYHPDLNKEPGADEKFKEIAEAYEVLSDDQKKARYDQFGHEDPNAGFGGGFGGGGFGGFEDIFSSFFGGGGRRQDPNAPRKGD 109          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_PROMA (Chaperone protein dnaJ OS=Prochlorococcus marinus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.686e-16
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHP--GNQGGY-----TYFTS-GGPGQS 462
            D Y  LGV RNA    +++A+ +L+ QYHPD NK   A+E+F EI  AY++L D EKR +YD +G+     G  AG P  G+ GG+     T+F+  GGPG S
Sbjct:    3 DFYDTLGVNRNADADSLKRAYRRLARQYHPDINKEAGAEERFKEIGRAYEVLGDPEKRARYDQFGE--AGLGGSAGMPDMGDMGGFADIFETFFSGFGGPGSS 103          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_FUSNN (Chaperone protein dnaJ OS=Fusobacterium nucleatum subsp. nucleatum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.686e-16
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN------KAAQEKFAEINNAYDILSDEEKRKKYDLYGD---EKGSPGFDAGHPGNQGGYTY 435
            D Y+VLG++++AS+ +I+KA+ K +++YHPDK  N      K A+EKF EIN AY ILSD +K+++YD +G    E+G  GF  G   N GG+ +
Sbjct:    5 DYYEVLGIDKSASENDIKKAYRKAAMKYHPDKFANASDAEKKDAEEKFKEINEAYQILSDSQKKQQYDQFGHAAFEQGGAGFGGGF--NAGGFDF 97          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNJ10_CAEEL (DnaJ homolog dnj-10 OS=Caenorhabditis elegans GN=dnj-10 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGY 429
            D YK LGV++ +  + I+KA+ +L+ +YHPD NK K AQ KF EI+ AY++LSD+ KR++YD Y    GS G  AG  G  GG+
Sbjct:   44 DYYKTLGVDKKSDAKAIKKAYFQLAKKYHPDVNKTKEAQTKFQEISEAYEVLSDDTKRQEYDAY----GSGGGPAGGRGGAGGF 123          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNJB (Chaperone protein dnaJ OS=Synechococcus sp. GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 48/113 (42.48%), Postives = 70/113 (61.95%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQ-----GGY-----TYFTS-GGPGQSQFTSRPG 483
            D Y++LGV R++S+ EI++A+ +L+ +YHPD NK   A+E+F EIN AY++LSD E + +YD +G E G  G  A   G Q     GG+     ++FT+  G G S   SR G
Sbjct:    4 DYYEILGVSRDSSKEEIKRAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSDNELKARYDRFG-EAGLSGAAAAASGFQDFAGMGGFADIFESFFTNFAGAGASYARSRQG 115          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_RICAH (Chaperone protein dnaJ OS=Rickettsia akari (strain Hartford) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGY 429
            D YK+LGV + ASQ +++KA+ KL+ QYHPD   +K A++KF EIN AYD+L DE+KR  YD +G +        G  G+  G+
Sbjct:    4 DYYKILGVSKTASQADLKKAYLKLAKQYHPDTTDDKDAEKKFKEINRAYDVLKDEQKRAAYDRFGHDTFQNQQSRGGGGSHAGF 87          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_RALPJ (Chaperone protein dnaJ OS=Ralstonia pickettii (strain 12J) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKN-KNKAAQEKFAEINNAYDILSDEEKRKKYDLYG----DEKGSPGFDAGHPGNQGGY 429
            D Y+VLGV +NAS  EI+KA+ KL+++YHPD+N  +K A++KF E   AY++LSD EK+  YD YG    D   + GF AG  G  GG+
Sbjct:    5 DYYEVLGVGKNASDDEIKKAYRKLAMKYHPDRNPDSKEAEDKFKEAKEAYEMLSDAEKKAAYDQYGHAGVDPNMAGGFGAGGAGFGGGF 93          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEST (Chaperone protein dnaJ OS=Pseudomonas stutzeri GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPG-NQGG----------YTYFTSGGPGQSQFTSRPG 483
            D Y+VLGVER AS+ E++KA+ +L++++HPD+N  +KAA+E F E N AY++LSD  KR  YD YG     P   AG  G   GG          ++ F SGG G S+  ++ G
Sbjct:    5 DFYEVLGVERGASEAELKKAYRRLAMKHHPDRNPGDKAAEEAFKEANEAYEVLSDPSKRAAYDQYGHAGVDPQMGAGAGGAGYGGANFSDIFGDVFSDFFSGGRGGSRGGAQRG 118          
The following BLAST results are available for this feature:
BLAST of FC930188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_ERYRH3.588e-1637.72Chaperone protein dnaJ OS=Erysipelothrix rhusiopat... [more]
DNAJ_BRECH3.588e-1643.40Chaperone protein dnaJ OS=Brevibacillus choshinens... [more]
DNAJ_BACSH3.588e-1643.12Chaperone protein dnaJ OS=Bacillus sphaericus GN=d... [more]
DNAJ_PROMA4.686e-1644.66Chaperone protein dnaJ OS=Prochlorococcus marinus ... [more]
DNAJ_FUSNN4.686e-1645.26Chaperone protein dnaJ OS=Fusobacterium nucleatum ... [more]
DNJ10_CAEEL6.121e-1648.81DnaJ homolog dnj-10 OS=Caenorhabditis elegans GN=d... [more]
DNAJ_SYNJB6.121e-1642.48Chaperone protein dnaJ OS=Synechococcus sp. GN=dna... [more]
DNAJ_RICAH6.121e-1646.43Chaperone protein dnaJ OS=Rickettsia akari (strain... [more]
DNAJ_RALPJ6.121e-1649.44Chaperone protein dnaJ OS=Ralstonia pickettii (str... [more]
DNAJ_PSEST6.121e-1642.98Chaperone protein dnaJ OS=Pseudomonas stutzeri GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34004G01EF PostHarvC1 Citrus clementina cDNA clone C34004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930188 ID=FC930188; Name=FC930188; organism=Citrus clementina; type=EST; length=669bp
GACCCCGTCGCTATTGTTATTAATTGTGATCTTTTTCATAACGCACTTCA
CTCCGTTCAATAATAAACCTCTAAAATCTGTAGTGAGATGCAAGGTGCAA
AAATGAAGGTTCGTTTCGCACTATCGATTTTTCTGTTTTCAACGCTTTTG
ATCTTCAACGCGAAAGCCAAAACCGTCGATCCGTACAAGGTTCTTGGTGT
TGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAAGCTTTCCACAAGCTCT
CTCTTCAATATCACCCGGACAAGAACAAAAATAAGGCCGCTCAGGAGAAG
TTCGCTGAGATTAATAATGCATATGATATTTTATCTGATGAAGAGAAGAG
GAAAAAATATGATTTGTATGGGGATGAGAAGGGCAGTCCTGGATTTGATG
CTGGGCATCCTGGGAATCAAGGTGGGTATACATACTTCACAAGTGGTGGA
CCGGGACAAAGCCAGTTTACCTCTAGACCTGGTGAATGGCAGAATATGGG
GGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCCTTTGGCGGTACTGGTG
GTTCAAGTTCATTTGGTTTTGGTCTAGATGATATCTTCTCTGACTTTTTT
GGCAGTAGTTTTGGAGGAGGACGCCAATTTGGTGGTTTTAGTGGTTCAAC
TGGTTCTCAGTCTCAATCT
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