FC930188

Overview
NameFC930188
Unique NameFC930188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNJB5_BOVIN (DnaJ homolog subfamily B member 5 OS=Bos taurus GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQFTS 474
            D YK+LG+   A++ EI+KA+ K++L+YHPDKNK   A+EKF EI  AYD+LSD +KR  YD YG+E    G   G  G   G  ++T  G   + F S
Sbjct:    4 DYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEGLKTG--GGSSGGSSGSFHYTFHGDPHATFAS 100          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMF (Chaperone protein dnaJ OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPG--NQGGYTYFTS------GGPGQSQFTSRPGEWQNM 498
            D Y+VLGV ++AS  EI+KA+ KLS QYHPD NK   A EKF EI+ AY+ LSD +KR +YD YG    + GF  G  G  + GG++ F        GG G+ Q  + P +  ++
Sbjct:    5 DYYEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGAGGGFSGGGFSGFEDIFDTFFGGGGRQQDPNAPRQGSDL 119          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMC (Chaperone protein dnaJ OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPG--NQGGYTYFTS------GGPGQSQFTSRPGEWQNM 498
            D Y+VLGV ++AS  EI+KA+ KLS QYHPD NK   A EKF EI+ AY+ LSD +KR +YD YG    + GF  G  G  + GG++ F        GG G+ Q  + P +  ++
Sbjct:    5 DYYEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGAGGGFSGGGFSGFEDIFDTFFGGGGRQQDPNAPRQGSDL 119          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LACBA (Chaperone protein dnaJ OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 48/92 (52.17%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSP-GFDAGHPGNQGGYTYFTSGG 450
            D Y VLGV ++ASQ EI+KA+ KLS +YHPD NK   A EKF E+ +AYD+L DE+KR  YD  G   G+  GF     G QGG+  F  GG
Sbjct:    5 DLYGVLGVAKDASQDEIKKAYRKLSKKYHPDLNKAPDAAEKFKEVQDAYDVLGDEQKRANYDQSGSADGAQGGFGGFGGGQQGGFGGFGGGG 96          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLP8 (Chaperone protein dnaJ OS=Chlorobaculum parvum (strain NCIB 8327) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKN-KNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE-KGSPGFDAGHPGNQGGYTY---------FTSGG 450
            D Y++LGV R+A + EI+KA+ KL+L+YHPDKN  NK A+EKF E N AY++LS+++KR++YD +G    GS     G PG  GG  Y         FT GG
Sbjct:    4 DYYEILGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEKFKEANEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGGPGGFGGGGYADINDIFEMFTGGG 105          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNJB5_HUMAN (DnaJ homolog subfamily B member 5 OS=Homo sapiens GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQFTS 474
            D YK+LG+   A++ EI+KA+ K++L+YHPDKNK   A+EKF EI  AYD+LSD +KR  YD YG+E    G   G  G   G  ++T  G   + F S
Sbjct:    4 DYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEGLKTG--GGTSGGSSGSFHYTFHGDPHATFAS 100          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_WOLPP (Chaperone protein dnaJ OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 51/103 (49.51%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGG--YTYFTSGGPGQSQFTSR 477
            D Y +L V RNAS  EI+KA+ KL+L+YHPD+N  NK A+EKF E+  AY++LSD EKR  YD YG +  S GFD    G      +  F  GG G S   SR
Sbjct:    5 DYYDLLEVSRNASTDEIKKAYKKLALKYHPDRNPGNKEAEEKFKEVTAAYEVLSDSEKRAGYDRYGHDGASGGFDFSQAGGDFSDIFNDFFGGGFGGSTSRSR 107          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_BACSK (Chaperone protein dnaJ OS=Bacillus clausii (strain KSM-K16) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGF-DAGHPGNQGGYT-----YFTSGGPGQSQFTSRPGE 486
            D Y+VLGV+RNAS  E++KA+ KL+ +YHPD NK + A+ KF E+  AYD LSD +K+ +YD +G    + GF  AG  G+ GG++     +F  GG  ++    R G+
Sbjct:    5 DYYEVLGVDRNASVEEVKKAYRKLARKYHPDVNKEEDAEAKFKEVKEAYDTLSDPQKKARYDQFGHADPNQGFGGAGASGDFGGFSDIFDMFFGGGGGRRNPNAPRQGD 113          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_PELCD (Chaperone protein dnaJ OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.539e-18
Identity = 51/104 (49.04%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQFTSRPGE 486
            D Y+VLGV RNAS+ EI+KA+ KL+++YHPDKN  +KAA++KF EI+ AY ILSD ++R  YD YG         AG  G  GG   ++SGG G + F    G+
Sbjct:    5 DYYEVLGVHRNASETEIKKAYRKLAIKYHPDKNAGDKAAEDKFKEISEAYSILSDTQQRVIYDQYG--------HAGLNGGGGGGGSYSSGGFGGTPFEDLFGD 100          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMO (Chaperone protein dnaJ OS=Listeria monocytogenes GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.539e-18
Identity = 50/116 (43.10%), Postives = 68/116 (58.62%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPG---NQGGYTYFTS------GGPGQSQFTSRPGEWQNM 498
            D Y+VLG+ ++AS  EI+KA+ KLS QYHPD NK   A EKF EI+ AY+ LSD +KR +YD YG    + GF  G  G     GG++ F        GG G+ Q  + P +  ++
Sbjct:    5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGGAGGGFGGGGFSGFEDIFDTFFGGGGRQQDPNAPRQGSDL 120          
The following BLAST results are available for this feature:
BLAST of FC930188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJB5_BOVIN3.834e-1846.46DnaJ homolog subfamily B member 5 OS=Bos taurus GN... [more]
DNAJ_LISMF3.834e-1844.35Chaperone protein dnaJ OS=Listeria monocytogenes s... [more]
DNAJ_LISMC3.834e-1844.35Chaperone protein dnaJ OS=Listeria monocytogenes s... [more]
DNAJ_LACBA3.834e-1852.17Chaperone protein dnaJ OS=Lactobacillus brevis (st... [more]
DNAJ_CHLP83.834e-1848.04Chaperone protein dnaJ OS=Chlorobaculum parvum (st... [more]
DNJB5_HUMAN5.007e-1846.46DnaJ homolog subfamily B member 5 OS=Homo sapiens ... [more]
DNAJ_WOLPP5.007e-1849.51Chaperone protein dnaJ OS=Wolbachia pipientis subs... [more]
DNAJ_BACSK5.007e-1843.12Chaperone protein dnaJ OS=Bacillus clausii (strain... [more]
DNAJ_PELCD6.539e-1849.04Chaperone protein dnaJ OS=Pelobacter carbinolicus ... [more]
DNAJ_LISMO6.539e-1843.10Chaperone protein dnaJ OS=Listeria monocytogenes G... [more]

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Properties
Property NameValue
Genbank descriptionC34004G01EF PostHarvC1 Citrus clementina cDNA clone C34004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930188 ID=FC930188; Name=FC930188; organism=Citrus clementina; type=EST; length=669bp
GACCCCGTCGCTATTGTTATTAATTGTGATCTTTTTCATAACGCACTTCA
CTCCGTTCAATAATAAACCTCTAAAATCTGTAGTGAGATGCAAGGTGCAA
AAATGAAGGTTCGTTTCGCACTATCGATTTTTCTGTTTTCAACGCTTTTG
ATCTTCAACGCGAAAGCCAAAACCGTCGATCCGTACAAGGTTCTTGGTGT
TGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAAGCTTTCCACAAGCTCT
CTCTTCAATATCACCCGGACAAGAACAAAAATAAGGCCGCTCAGGAGAAG
TTCGCTGAGATTAATAATGCATATGATATTTTATCTGATGAAGAGAAGAG
GAAAAAATATGATTTGTATGGGGATGAGAAGGGCAGTCCTGGATTTGATG
CTGGGCATCCTGGGAATCAAGGTGGGTATACATACTTCACAAGTGGTGGA
CCGGGACAAAGCCAGTTTACCTCTAGACCTGGTGAATGGCAGAATATGGG
GGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCCTTTGGCGGTACTGGTG
GTTCAAGTTCATTTGGTTTTGGTCTAGATGATATCTTCTCTGACTTTTTT
GGCAGTAGTTTTGGAGGAGGACGCCAATTTGGTGGTTTTAGTGGTTCAAC
TGGTTCTCAGTCTCAATCT
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