FC930188

Overview
NameFC930188
Unique NameFC930188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DJC16_MOUSE (DnaJ homolog subfamily C member 16 OS=Mus musculus GN=Dnajc16 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.539e-18
Identity = 40/73 (54.79%), Postives = 57/73 (78.08%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGF 396
            DPY+VLGV R ASQ +I+KA+ KL+ ++HPDKNK+  A+++F +I+ AY+ILS+EEKR  YD YGD   + G+
Sbjct:   29 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGDAGENQGY 101          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: MDJ1_SCHPO (DnaJ homolog 1, mitochondrial OS=Schizosaccharomyces pombe GN=mdj1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQFTS 474
            DPYK LGV ++AS  EI+ A++KL+ QYHPD N +KAAQ+KF EI  AY++L D +K+K +D YG      G   G     G +  F +G  G S F+S
Sbjct:   86 DPYKTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVEIKQAYEVLQDPKKKKAFDTYGAGAFKNGEFTG-----GDFEGFQNGFAGASSFSS 179          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSS1 (Chaperone protein dnaJ OS=Roseiflexus sp. (strain RS-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYG--DEKGSPGFD 399
            D Y+VLGV+RNASQ EI+KAF +L+ QYHPD NK   A+ KF EIN AY++LSD EKR  YD +G      +PGFD
Sbjct:    6 DYYEVLGVQRNASQDEIKKAFRRLARQYHPDVNKAPDAEAKFKEINEAYEVLSDPEKRSMYDRFGHAGPTAAPGFD 81          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSCS (Chaperone protein dnaJ OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYG--DEKGSPGFD 399
            D Y+VLGV+RNASQ EI+KAF +L+ QYHPD NK   A+ KF EIN AY++LSD EKR  YD +G      +PGFD
Sbjct:    6 DYYEVLGVQRNASQDEIKKAFRRLARQYHPDVNKAPDAEAKFKEINEAYEVLSDPEKRSMYDRFGHAGPTAAPGFD 81          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSL (Chaperone protein dnaJ OS=Geobacter sulfurreducens GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKN-KNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE-KGSPGFDAGHPGNQGGYTYF 438
            D Y+VLGV +NAS  EI+KAF KL++QYHPDKN  +K A+EKF EI  AY++LSD +KR +YD +G    G+ GF  G  G  G  T F
Sbjct:    7 DYYEVLGVHKNASDTEIKKAFRKLAIQYHPDKNPDDKEAEEKFKEITEAYEVLSDPQKRAQYDQFGHAGVGAGGFSGGGFGGFGAGTPF 95          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ANATD (Chaperone protein dnaJ OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  166 AKTVDPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDA-GHPGNQGGY 429
            A+  D Y++LGV RNA++ EI++A+ +L+ QYHPD N  NK A+EKF EIN AY++LSD EKRK YD +G     P + A G  G  GG+
Sbjct:    2 AQKKDYYEILGVPRNATEEEIKRAYRRLAKQYHPDANPGNKEAEEKFKEINEAYEVLSDPEKRKLYDQFGHAAFDPKYGAQGSGGFSGGF 91          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DJC16_CHICK (DnaJ homolog subfamily C member 16 OS=Gallus gallus GN=DNAJC16 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 40/73 (54.79%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGF 396
            DPY+VLGV R++SQ +I+KA+ +L+ Q+HPDKNK+  A++KF +I+ AY+ILS+EEKR  +D YGD   S G+
Sbjct:   28 DPYRVLGVGRSSSQADIKKAYKRLARQWHPDKNKDPGAEDKFIQISKAYEILSNEEKRANFDRYGDAGESQGY 100          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_STACT (Chaperone protein dnaJ OS=Staphylococcus carnosus (strain TM300) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQFTS 474
            D Y+VLGV ++AS+ EI+KA+ KLS +YHPD N+ + A+EKF EI+ AY++LSDE KR  YD +G +    GF  G  G  GG  +   GG  +  F+S
Sbjct:    5 DYYEVLGVSKDASKDEIKKAYRKLSKKYHPDINQEEGAEEKFKEISEAYEVLSDENKRANYDQFGHDGPQGGF--GGQGFGGGQDFGGFGGGFEDIFSS 101          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LACF3 (Chaperone protein dnaJ OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQF 468
            D Y VLGV+++AS+ EI++A+ KL+ +YHPD N    A++KF +IN AY+ LSD++KR +YD +    G+ G  AG  G QGG+  F  GG  Q  F
Sbjct:    5 DLYDVLGVKKDASEAEIKRAYRKLAAKYHPDVNHEPGAEKKFKKINEAYETLSDDQKRAQYDQF----GTTGSQAGGFGGQGGFGGFGQGGFSQGGF 97          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOBB (Chaperone protein dnaJ OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPG 456
            D Y+VLG+++ AS  EI+KAF KL+++YHPDKNK N  A+EKF EIN AY +LSD EK+  YD +    GS  F+ G  G+ GG+  F  GG G
Sbjct:    5 DYYEVLGLQKGASDDEIKKAFRKLAIKYHPDKNKGNTEAEEKFKEINEAYQVLSDPEKKSNYDQF----GSADFNGGGFGS-GGFGGFDMGGFG 93          
The following BLAST results are available for this feature:
BLAST of FC930188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DJC16_MOUSE6.539e-1854.79DnaJ homolog subfamily C member 16 OS=Mus musculus... [more]
MDJ1_SCHPO8.541e-1846.46DnaJ homolog 1, mitochondrial OS=Schizosaccharomyc... [more]
DNAJ_ROSS18.541e-1859.21Chaperone protein dnaJ OS=Roseiflexus sp. (strain ... [more]
DNAJ_ROSCS8.541e-1859.21Chaperone protein dnaJ OS=Roseiflexus castenholzii... [more]
DNAJ_GEOSL8.541e-1853.93Chaperone protein dnaJ OS=Geobacter sulfurreducens... [more]
DNAJ_ANATD8.541e-1851.11Chaperone protein dnaJ OS=Anaerocellum thermophilu... [more]
DJC16_CHICK8.541e-1854.79DnaJ homolog subfamily C member 16 OS=Gallus gallu... [more]
DNAJ_STACT1.115e-1747.47Chaperone protein dnaJ OS=Staphylococcus carnosus ... [more]
DNAJ_LACF31.115e-1746.39Chaperone protein dnaJ OS=Lactobacillus fermentum ... [more]
DNAJ_CLOBB1.115e-1752.13Chaperone protein dnaJ OS=Clostridium botulinum (s... [more]

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Properties
Property NameValue
Genbank descriptionC34004G01EF PostHarvC1 Citrus clementina cDNA clone C34004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930188 ID=FC930188; Name=FC930188; organism=Citrus clementina; type=EST; length=669bp
GACCCCGTCGCTATTGTTATTAATTGTGATCTTTTTCATAACGCACTTCA
CTCCGTTCAATAATAAACCTCTAAAATCTGTAGTGAGATGCAAGGTGCAA
AAATGAAGGTTCGTTTCGCACTATCGATTTTTCTGTTTTCAACGCTTTTG
ATCTTCAACGCGAAAGCCAAAACCGTCGATCCGTACAAGGTTCTTGGTGT
TGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAAGCTTTCCACAAGCTCT
CTCTTCAATATCACCCGGACAAGAACAAAAATAAGGCCGCTCAGGAGAAG
TTCGCTGAGATTAATAATGCATATGATATTTTATCTGATGAAGAGAAGAG
GAAAAAATATGATTTGTATGGGGATGAGAAGGGCAGTCCTGGATTTGATG
CTGGGCATCCTGGGAATCAAGGTGGGTATACATACTTCACAAGTGGTGGA
CCGGGACAAAGCCAGTTTACCTCTAGACCTGGTGAATGGCAGAATATGGG
GGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCCTTTGGCGGTACTGGTG
GTTCAAGTTCATTTGGTTTTGGTCTAGATGATATCTTCTCTGACTTTTTT
GGCAGTAGTTTTGGAGGAGGACGCCAATTTGGTGGTTTTAGTGGTTCAAC
TGGTTCTCAGTCTCAATCT
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