FC930188

Overview
NameFC930188
Unique NameFC930188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOBA (Chaperone protein dnaJ OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPG 456
            D Y+VLG+++ AS  EI+KAF KL+++YHPDKNK N  A+EKF EIN AY +LSD EK+  YD +    GS  F+ G  G+ GG+  F  GG G
Sbjct:    5 DYYEVLGLQKGASDDEIKKAFRKLAIKYHPDKNKGNTEAEEKFKEINEAYQVLSDPEKKSNYDQF----GSADFNGGGFGS-GGFGGFDMGGFG 93          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_BACHD (Chaperone protein dnaJ OS=Bacillus halodurans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 45/107 (42.06%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYT-----YFTSGGPGQSQFTSRPG 483
            D Y+VLGV+RNAS  E++KA+ KL+ +YHPD NK   A++KF E+  A+D LSD +K+  YD +G    + GF  G  G+ GG++     +F  GG  ++    R G
Sbjct:    5 DYYEVLGVDRNASADEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAFDTLSDPQKKAHYDQFGHTDPNQGFGGGGAGDFGGFSDIFDMFFGGGGGRRNPNAPRQG 111          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAA5 (Chaperone protein dnaJ OS=Cyanothece sp. (strain ATCC 51142) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 42/100 (42.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE--KGSPGFDAGHPGNQGGY-----TYFTSGGPG 456
            D Y +LGV+RNAS+ ++++A+ +L+ +YHPD NK   A+E+F EIN AY++LS+ + R +YD +G+    G+ GF+ G  G+ GG+     T F+  G G
Sbjct:    4 DYYDILGVDRNASKEDLKRAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPDTRSRYDQFGEAGVSGAGGFNYGDMGDMGGFADIFETIFSGFGGG 103          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ2_THET8 (Chaperone protein dnaJ 2 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ2 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTY 435
            D Y +LGV RNA+Q EI++A+ +L+ QYHPD NK+  A+EKF EIN AY +LSD EKR+ YD YG  +  P      P   GGY +
Sbjct:    6 DYYAILGVPRNATQEEIKRAYKRLARQYHPDVNKSPEAEEKFKEINEAYAVLSDPEKRRIYDTYGTTEAPP------PPPPGGYDF 85          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_STAS1 (Chaperone protein dnaJ OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 46/91 (50.55%), Postives = 60/91 (65.93%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGG 450
            D Y+VLGV ++AS+ EI+KA+ KLS QYHPD NK + A EKF EI+ AY++LSDE KR  YD +G +    GF     G Q  ++ F  GG
Sbjct:    5 DYYEVLGVSKSASKDEIKKAYRKLSKQYHPDINKEEGADEKFKEISEAYEVLSDENKRANYDQFGHDGPQGGFGGQGFGGQ-DFSGFGGGG 94          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOTN (Chaperone protein dnaJ OS=Geobacillus thermodenitrificans (strain NG80-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPG 456
            D Y+VLGV +NA++ EI+KA+ KLS QYHPD NK   A EKF EI  AY++LSD+EKR +YD +G    +  F  G  G  GG+ +    G G
Sbjct:    5 DYYEVLGVSKNATKDEIKKAYRKLSKQYHPDINKAPDAAEKFKEIKEAYEVLSDDEKRARYDRFGHADPNEAFGGGFQG--GGFDFGGFSGFG 95          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOTH (Chaperone protein dnaJ OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.485e-17
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSP-GFDAGHPGN--QGGYTYFTSGGPG 456
            D Y++LGV+R AS  EI+KA+ KL+ QYHPD N  +KAA+ KF EIN AY++LSD +KR +YD +G     P GF  G  G    GG+  F  GG G
Sbjct:    6 DYYEILGVDRGASDAEIKKAYRKLAKQYHPDMNPGDKAAEAKFKEINEAYEVLSDPQKRARYDQFGHSAFDPNGFGGGGFGGGFTGGFGDFDFGGFG 102          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: SPJ1_SCHPO (DnaJ-related protein spj1 OS=Schizosaccharomyces pombe GN=spj1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  187 KVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE--KGSPGFDAGHPGNQGGYTYFTSGGPGQSQF 468
            ++LGV ++AS+ EI+KA+ +L+ Q+HPDKN  N+ AQEKF EIN A+++LSD E+RK YD YG+E   G PG   G PG       F  GG G   F
Sbjct:   10 QILGVSKDASESEIRKAYRQLTKQWHPDKNPGNEEAQEKFIEINKAHEVLSDPEQRKIYDAYGEEGLNGQPGGPGGGPGEG-----FPGGGFGFDPF 101          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAW (Chaperone protein dnaJ OS=Staphylococcus aureus (strain MW2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDA-GHPGNQ-GGYTYFTSGG 450
            D Y+VLG+ ++AS+ EI+KA+ KLS +YHPD NK + A EKF EI+ AY++LSD+ KR  YD +G + G  GF   G  G+  GG++ F  GG
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHD-GPQGFGGQGFNGSDFGGFSGFGGGG 96          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAT (Chaperone protein dnaJ OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDA-GHPGNQ-GGYTYFTSGG 450
            D Y+VLG+ ++AS+ EI+KA+ KLS +YHPD NK + A EKF EI+ AY++LSD+ KR  YD +G + G  GF   G  G+  GG++ F  GG
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHD-GPQGFGGQGFNGSDFGGFSGFGGGG 96          
The following BLAST results are available for this feature:
BLAST of FC930188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_CLOBA1.115e-1752.13Chaperone protein dnaJ OS=Clostridium botulinum (s... [more]
DNAJ_BACHD1.115e-1742.06Chaperone protein dnaJ OS=Bacillus halodurans GN=d... [more]
DNAJ_CYAA51.457e-1742.00Chaperone protein dnaJ OS=Cyanothece sp. (strain A... [more]
DNAJ2_THET81.457e-1751.16Chaperone protein dnaJ 2 OS=Thermus thermophilus (... [more]
DNAJ_STAS11.903e-1750.55Chaperone protein dnaJ OS=Staphylococcus saprophyt... [more]
DNAJ_GEOTN1.903e-1749.46Chaperone protein dnaJ OS=Geobacillus thermodenitr... [more]
DNAJ_CLOTH2.485e-1750.52Chaperone protein dnaJ OS=Clostridium thermocellum... [more]
SPJ1_SCHPO3.245e-1749.48DnaJ-related protein spj1 OS=Schizosaccharomyces p... [more]
DNAJ_STAAW3.245e-1749.46Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAT3.245e-1749.46Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionC34004G01EF PostHarvC1 Citrus clementina cDNA clone C34004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930188 ID=FC930188; Name=FC930188; organism=Citrus clementina; type=EST; length=669bp
GACCCCGTCGCTATTGTTATTAATTGTGATCTTTTTCATAACGCACTTCA
CTCCGTTCAATAATAAACCTCTAAAATCTGTAGTGAGATGCAAGGTGCAA
AAATGAAGGTTCGTTTCGCACTATCGATTTTTCTGTTTTCAACGCTTTTG
ATCTTCAACGCGAAAGCCAAAACCGTCGATCCGTACAAGGTTCTTGGTGT
TGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAAGCTTTCCACAAGCTCT
CTCTTCAATATCACCCGGACAAGAACAAAAATAAGGCCGCTCAGGAGAAG
TTCGCTGAGATTAATAATGCATATGATATTTTATCTGATGAAGAGAAGAG
GAAAAAATATGATTTGTATGGGGATGAGAAGGGCAGTCCTGGATTTGATG
CTGGGCATCCTGGGAATCAAGGTGGGTATACATACTTCACAAGTGGTGGA
CCGGGACAAAGCCAGTTTACCTCTAGACCTGGTGAATGGCAGAATATGGG
GGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCCTTTGGCGGTACTGGTG
GTTCAAGTTCATTTGGTTTTGGTCTAGATGATATCTTCTCTGACTTTTTT
GGCAGTAGTTTTGGAGGAGGACGCCAATTTGGTGGTTTTAGTGGTTCAAC
TGGTTCTCAGTCTCAATCT
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