FC930188

Overview
NameFC930188
Unique NameFC930188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_PROMP (Chaperone protein dnaJ OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHP--GNQGGY-----TYFTSGGPGQSQ 465
            D Y++LGV R+A    ++ A+ KL+ QYHPD NK+  A++KF EI  AY+ L+D E R +YD +G+     G  AG P  G+ GG+     T+F   G   SQ
Sbjct:    3 DFYQILGVSRDADANTLKSAYRKLARQYHPDVNKDPGAEDKFKEIGKAYEALADPETRARYDQFGE--AGIGGAAGMPDMGDMGGFGDLFETFFNGFGGQSSQ 103          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_MACCJ (Chaperone protein dnaJ OS=Macrococcus caseolyticus (strain JCSC5402) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE--KGSPGFDAGHPGNQGG----YTYFTSGGPGQSQFTSRPG 483
            D Y+VLG+ + AS+ EI++A+ KLS +YHPD NK   A++KF EI  AY++LSD++K+ +YD +G        GF     G  GG    ++ F  GG  +     R G
Sbjct:    5 DYYEVLGLSKGASKEEIKRAYKKLSKKYHPDINKEADAEDKFKEIAEAYEVLSDDQKKAQYDQFGHAGMGQGAGFGGQDFGGFGGFEDIFSSFFGGGARRDPNAPRQG 112          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_HERAR (Chaperone protein dnaJ OS=Herminiimonas arsenicoxydans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKN-KNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGY 429
            D Y++LG+ +NAS  EI+KA+ KL++++HPD+N  +K A++KF E   AY++LSD +KR  YD YG     P    G  G  GG+
Sbjct:    5 DFYEILGLGKNASDEEIKKAYRKLAMKHHPDRNPDSKGAEDKFKEAKEAYEMLSDPQKRDAYDRYGHAGVDPNMGGG--GGGGGF 87          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_BURCM (Chaperone protein dnaJ OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 46/104 (44.23%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKN-KNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQFTSRPGE 486
            D Y+VLGV +NAS  EI+KA+ KL+++YHPD+N  +K A+E F E   AY++LSD +KR  YD YG         AG   N GG     +GG G   F    G+
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYG--------HAGVDPNMGG-----AGGQGFGGFADAFGD 95          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_BURA4 (Chaperone protein dnaJ OS=Burkholderia ambifaria (strain MC40-6) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 46/104 (44.23%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKN-KNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQFTSRPGE 486
            D Y+VLGV +NAS  EI+KA+ KL+++YHPD+N  +K A+E F E   AY++LSD +KR  YD YG         AG   N GG     +GG G   F    G+
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYG--------HAGVDPNMGG-----AGGQGFGGFADAFGD 95          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_BUCAT (Chaperone protein dnaJ OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 35/66 (53.03%), Postives = 52/66 (78.79%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYG 372
            D Y++LG+ ++A +REI+KA+ KL+++YHPD+N+ +K A+ KF EI  AY+IL +EEKR  YD YG
Sbjct:    5 DYYQILGIPKSAEEREIKKAYKKLAMKYHPDRNQGDKTAEGKFKEIKEAYEILINEEKRSAYDQYG 70          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_BUCAI (Chaperone protein dnaJ OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=dnaJ PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 35/66 (53.03%), Postives = 52/66 (78.79%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYG 372
            D Y++LG+ ++A +REI+KA+ KL+++YHPD+N+ +K A+ KF EI  AY+IL +EEKR  YD YG
Sbjct:    5 DYYQILGIPKSAEEREIKKAYKKLAMKYHPDRNQGDKTAEGKFKEIKEAYEILINEEKRSAYDQYG 70          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_BUCA5 (Chaperone protein dnaJ OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 35/66 (53.03%), Postives = 52/66 (78.79%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYG 372
            D Y++LG+ ++A +REI+KA+ KL+++YHPD+N+ +K A+ KF EI  AY+IL +EEKR  YD YG
Sbjct:    5 DYYQILGIPKSAEEREIKKAYKKLAMKYHPDRNQGDKTAEGKFKEIKEAYEILINEEKRSAYDQYG 70          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_BLOPB (Chaperone protein dnaJ OS=Blochmannia pennsylvanicus (strain BPEN) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGG 426
            D Y++LG+ +NA +REI+K++ +L++++HPD+N  N  A+ KF EI  AY++LS+ EKR  YD YG      G   G   N GG
Sbjct:    5 DYYEILGISKNADEREIKKSYKRLAMKFHPDRNPGNTTAETKFKEIKEAYEVLSNSEKRAAYDQYGHAAFESG-SMGATSNSGG 87          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_AERHH (Chaperone protein dnaJ OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA-AQEKFAEINNAYDILSDEEKRKKYDLYG----DEKGSPGFDAGHPGNQGG 426
            D Y+VLGV ++A +REI+KA+ +L+++YHPD+N+  A A+EKF E+  AY+IL+D   R +YD YG    D+    G   GH G  GG
Sbjct:    5 DFYEVLGVSKDADEREIKKAYKRLAMKYHPDRNQGDAGAEEKFKEVKEAYEILTDANLRARYDQYGHAGVDQSQGGG---GHGGFGGG 89          
The following BLAST results are available for this feature:
BLAST of FC930188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_PROMP4.386e-1441.75Chaperone protein dnaJ OS=Prochlorococcus marinus ... [more]
DNAJ_MACCJ4.386e-1439.81Chaperone protein dnaJ OS=Macrococcus caseolyticus... [more]
DNAJ_HERAR4.386e-1444.71Chaperone protein dnaJ OS=Herminiimonas arsenicoxy... [more]
DNAJ_BURCM4.386e-1444.23Chaperone protein dnaJ OS=Burkholderia ambifaria (... [more]
DNAJ_BURA44.386e-1444.23Chaperone protein dnaJ OS=Burkholderia ambifaria (... [more]
DNAJ_BUCAT4.386e-1453.03Chaperone protein dnaJ OS=Buchnera aphidicola subs... [more]
DNAJ_BUCAI4.386e-1453.03Chaperone protein dnaJ OS=Buchnera aphidicola subs... [more]
DNAJ_BUCA54.386e-1453.03Chaperone protein dnaJ OS=Buchnera aphidicola subs... [more]
DNAJ_BLOPB4.386e-1444.05Chaperone protein dnaJ OS=Blochmannia pennsylvanic... [more]
DNAJ_AERHH4.386e-1446.59Chaperone protein dnaJ OS=Aeromonas hydrophila sub... [more]

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Properties
Property NameValue
Genbank descriptionC34004G01EF PostHarvC1 Citrus clementina cDNA clone C34004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930188 ID=FC930188; Name=FC930188; organism=Citrus clementina; type=EST; length=669bp
GACCCCGTCGCTATTGTTATTAATTGTGATCTTTTTCATAACGCACTTCA
CTCCGTTCAATAATAAACCTCTAAAATCTGTAGTGAGATGCAAGGTGCAA
AAATGAAGGTTCGTTTCGCACTATCGATTTTTCTGTTTTCAACGCTTTTG
ATCTTCAACGCGAAAGCCAAAACCGTCGATCCGTACAAGGTTCTTGGTGT
TGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAAGCTTTCCACAAGCTCT
CTCTTCAATATCACCCGGACAAGAACAAAAATAAGGCCGCTCAGGAGAAG
TTCGCTGAGATTAATAATGCATATGATATTTTATCTGATGAAGAGAAGAG
GAAAAAATATGATTTGTATGGGGATGAGAAGGGCAGTCCTGGATTTGATG
CTGGGCATCCTGGGAATCAAGGTGGGTATACATACTTCACAAGTGGTGGA
CCGGGACAAAGCCAGTTTACCTCTAGACCTGGTGAATGGCAGAATATGGG
GGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCCTTTGGCGGTACTGGTG
GTTCAAGTTCATTTGGTTTTGGTCTAGATGATATCTTCTCTGACTTTTTT
GGCAGTAGTTTTGGAGGAGGACGCCAATTTGGTGGTTTTAGTGGTTCAAC
TGGTTCTCAGTCTCAATCT
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