FC930188

Overview
NameFC930188
Unique NameFC930188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJM_MYCPN (DnaJ-like protein MG200 homolog OS=Mycoplasma pneumoniae GN=MPN_119 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  160 AKAKTVDPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTY 435
            A+AK  D Y+VLG+ R+A   +I+KAF KL+ +YHPD+NK   A + FAEIN A D+LS+ +KR  YD YG +    G D     N+GG+ +
Sbjct:    2 AEAKR-DYYEVLGLSRDADDNDIKKAFRKLAKKYHPDRNKAPDAAQIFAEINEANDVLSNPKKRANYDKYGHD----GVD-----NEGGFAF 83          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ1_STRCO (Chaperone protein dnaJ 1 OS=Streptomyces coelicolor GN=dnaJ1 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTY 435
            D YKVLGV ++A++ EI+KA+ KL+ + HPD NK N  A+E+F EI+ A DIL D +KRK+YD      G+ GF  G PG  GG T+
Sbjct:   10 DYYKVLGVPKDATEAEIKKAYRKLARENHPDANKGNVKAEERFKEISEANDILGDPKKRKEYDEARALFGNGGFRPG-PGAGGGGTF 95          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ1_CORGL (Chaperone protein dnaJ 1 OS=Corynebacterium glutamicum GN=dnaJ1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE------KGSPGFDAGHPGNQG---GYTYFTSGGPGQSQ 465
            D Y +LGV+RNA++ EI+KA+ KL+ +YHPD N  + A EKF E + A+++L+D +KR+  D+ GD        G+ GF  G  G+ G    +  F  GG G S+
Sbjct:    4 DYYGILGVDRNATESEIKKAYRKLARKYHPDVNPGEEAAEKFREASVAHEVLTDPDKRRIVDMGGDPMEQGGGAGAGGFGGGFGGSGGLGDIFDAFFGGGAGGSR 108          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: TID_DROVI (Protein tumorous imaginal discs, mitochondrial OS=Drosophila virilis GN=l(2)tid PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 40/108 (37.04%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  157 NAKAKTVDPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA-AQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFD-AGHPGNQGGYTYFTSGGPGQSQFTS 474
            +++ +  D Y  LGV +NA+ ++I+KA+++L+ +YHPD NK+   A +KF +++ AY++LSD++KR++YD YG    +     AG  G  GG  +   G     QF S
Sbjct:   73 SSRMQAKDYYATLGVAKNANAKDIKKAYYELAKKYHPDTNKDDPDASKKFQDVSEAYEVLSDDQKRREYDTYGQTTENMNRQGAGGAGGFGGGPFGPDGFSQNWQFRS 180          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNJB7_HUMAN (DnaJ homolog subfamily B member 7 OS=Homo sapiens GN=DNAJB7 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 36/70 (51.43%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  175 VDPYKVLGVERNASQREIQKAFHKLSLQYHPDKN--KNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE 378
            VD Y+VLG++R AS  +I+KA+HK++L++HPDKN    + A+ KF E+  AY++LS++EKR  YD YG E
Sbjct:    2 VDYYEVLGLQRYASPEDIKKAYHKVALKWHPDKNPENKEEAERKFKEVAEAYEVLSNDEKRDIYDKYGTE 71          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNJA1_DICDI (DnaJ homolog subfamily A member 1 homolog OS=Dictyostelium discoideum GN=dnaja1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 42/110 (38.18%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  169 KTVDPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNK---AAQEKFAEINNAYDILSDEEKRKKYDLYGDE-KGSPGFDAGHPGNQGGYTYFTSGGPGQSQFTSRPGE 486
            K  + Y+ LGV+ + ++ E++KA+ K++++YHPDKN+     AA+ KF +I+ AY++LSD EKRK YD YG E     GF A    +   + +   GG G   F    G+
Sbjct:    3 KEKEYYERLGVKPDCTEDELKKAYRKMAVKYHPDKNQGPGKDAAEAKFKDISEAYEVLSDPEKRKMYDSYGSEGMKESGFHASSAEDLFSHFFGAGGGGGGFSFGGGGGD 112          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_THEVO (Chaperone protein dnaJ OS=Thermoplasma volcanium GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKN-KNKA-AQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPG-NQGGYTYFT 441
            D YK+LGV+RNAS+ +I+KAF +L+ ++HPD +  NKA A+EKF EI+ AY++LSD EKR+ Y    D+ GS  F  G    N   +T+F+
Sbjct:    4 DYYKILGVDRNASEEDIKKAFRELAKKWHPDLHPDNKAEAEEKFKEISEAYEVLSDPEKRRIY----DQTGSVDFGGGGSNFNWDNFTHFS 90          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_SALTY (Chaperone protein dnaJ OS=Salmonella typhimurium GN=dnaJ PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGD---EKGSPGFDAGHPGNQG 423
            D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI  AY++L+D +KR  YD YG    E+G  G   G   N G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFGGGFNGG 90          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_SALTI (Chaperone protein dnaJ OS=Salmonella typhi GN=dnaJ PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGD---EKGSPGFDAGHPGNQG 423
            D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI  AY++L+D +KR  YD YG    E+G  G   G   N G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFGGGFNGG 90          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_SALSV (Chaperone protein dnaJ OS=Salmonella schwarzengrund (strain CVM19633) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGD---EKGSPGFDAGHPGNQG 423
            D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI  AY++L+D +KR  YD YG    E+G  G   G   N G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFGGGFNGG 90          
The following BLAST results are available for this feature:
BLAST of FC930188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJM_MYCPN4.386e-1446.74DnaJ-like protein MG200 homolog OS=Mycoplasma pneu... [more]
DNAJ1_STRCO4.386e-1450.57Chaperone protein dnaJ 1 OS=Streptomyces coelicolo... [more]
DNAJ1_CORGL4.386e-1440.95Chaperone protein dnaJ 1 OS=Corynebacterium glutam... [more]
TID_DROVI5.729e-1437.04Protein tumorous imaginal discs, mitochondrial OS=... [more]
DNJB7_HUMAN5.729e-1451.43DnaJ homolog subfamily B member 7 OS=Homo sapiens ... [more]
DNJA1_DICDI5.729e-1438.18DnaJ homolog subfamily A member 1 homolog OS=Dicty... [more]
DNAJ_THEVO5.729e-1448.35Chaperone protein dnaJ OS=Thermoplasma volcanium G... [more]
DNAJ_SALTY5.729e-1445.35Chaperone protein dnaJ OS=Salmonella typhimurium G... [more]
DNAJ_SALTI5.729e-1445.35Chaperone protein dnaJ OS=Salmonella typhi GN=dnaJ... [more]
DNAJ_SALSV5.729e-1445.35Chaperone protein dnaJ OS=Salmonella schwarzengrun... [more]

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Properties
Property NameValue
Genbank descriptionC34004G01EF PostHarvC1 Citrus clementina cDNA clone C34004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930188 ID=FC930188; Name=FC930188; organism=Citrus clementina; type=EST; length=669bp
GACCCCGTCGCTATTGTTATTAATTGTGATCTTTTTCATAACGCACTTCA
CTCCGTTCAATAATAAACCTCTAAAATCTGTAGTGAGATGCAAGGTGCAA
AAATGAAGGTTCGTTTCGCACTATCGATTTTTCTGTTTTCAACGCTTTTG
ATCTTCAACGCGAAAGCCAAAACCGTCGATCCGTACAAGGTTCTTGGTGT
TGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAAGCTTTCCACAAGCTCT
CTCTTCAATATCACCCGGACAAGAACAAAAATAAGGCCGCTCAGGAGAAG
TTCGCTGAGATTAATAATGCATATGATATTTTATCTGATGAAGAGAAGAG
GAAAAAATATGATTTGTATGGGGATGAGAAGGGCAGTCCTGGATTTGATG
CTGGGCATCCTGGGAATCAAGGTGGGTATACATACTTCACAAGTGGTGGA
CCGGGACAAAGCCAGTTTACCTCTAGACCTGGTGAATGGCAGAATATGGG
GGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCCTTTGGCGGTACTGGTG
GTTCAAGTTCATTTGGTTTTGGTCTAGATGATATCTTCTCTGACTTTTTT
GGCAGTAGTTTTGGAGGAGGACGCCAATTTGGTGGTTTTAGTGGTTCAAC
TGGTTCTCAGTCTCAATCT
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